EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000022242 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: serine/arginine repetitive matrix protein 1-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 830 bases
Position: chrHT000096.1:69311-70140
Accession: 100186689
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000033132	PWI	PF01480.17	2.4e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000034457	-	771	XM_002124574	ENSCINP00000033132	159 (aa)	XP_002124610	H2XTZ8

Gene Model

Click here to download ENSCING00000022242's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03013	RNA transport	KEGG
cin03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000022242's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000022242	-	94	66.443	ENSG00000133226	SRRM1	96	72.368	Homo_sapiens
ENSCING00000022242	-	100	63.522	ENSACIG00000023398	-	66	63.522	Amphilophus_citrinellus
ENSCING00000022242	-	91	66.667	ENSACLG00000019786	-	67	63.522	Astatotilapia_calliptera
ENSCING00000022242	-	100	64.151	ENSAMXG00000040320	-	73	69.231	Astyanax_mexicanus
ENSCING00000022242	-	79	87.200	ENSCSAVG00000003919	-	81	77.108	Ciona_savignyi
ENSCING00000022242	-	100	62.874	ENSCVAG00000000504	-	67	69.231	Cyprinodon_variegatus
ENSCING00000022242	-	100	62.893	ENSDORG00000028601	-	84	62.893	Dipodomys_ordii
ENSCING00000022242	-	69	63.303	ENSEBUG00000002653	-	81	61.789	Eptatretus_burgeri
ENSCING00000022242	-	61	51.546	ENSFCAG00000044640	-	86	51.546	Felis_catus
ENSCING00000022242	-	100	62.264	ENSFCAG00000034671	-	51	68.382	Felis_catus
ENSCING00000022242	-	91	63.889	ENSFALG00000000476	SRRM1	97	69.565	Ficedula_albicollis
ENSCING00000022242	-	86	68.382	ENSFHEG00000007359	-	87	65.882	Fundulus_heteroclitus
ENSCING00000022242	-	94	66.443	ENSGALG00000001283	SRRM1	96	72.368	Gallus_gallus
ENSCING00000022242	-	100	62.874	ENSGAFG00000019431	-	69	62.874	Gambusia_affinis
ENSCING00000022242	-	50	58.750	ENSHGLG00100010430	-	99	58.750	Heterocephalus_glaber_male
ENSCING00000022242	-	84	61.940	ENSHGLG00100017918	-	100	61.940	Heterocephalus_glaber_male
ENSCING00000022242	-	58	63.441	ENSKMAG00000013810	-	98	63.441	Kryptolebias_marmoratus
ENSCING00000022242	-	91	66.667	ENSMZEG00005006344	-	67	63.522	Maylandia_zebra
ENSCING00000022242	-	100	62.893	ENSMMOG00000002390	-	77	70.513	Mola_mola
ENSCING00000022242	-	100	55.215	ENSMALG00000010813	-	67	55.215	Monopterus_albus
ENSCING00000022242	-	100	63.522	MGP_CAROLIEiJ_G0026636	Srrm1	69	69.853	Mus_caroli
ENSCING00000022242	-	100	63.522	ENSMUSG00000028809	Srrm1	69	69.853	Mus_musculus
ENSCING00000022242	-	100	63.522	MGP_PahariEiJ_G0028969	Srrm1	69	69.853	Mus_pahari
ENSCING00000022242	-	100	63.522	MGP_SPRETEiJ_G0027616	Srrm1	69	69.853	Mus_spretus
ENSCING00000022242	-	100	62.893	ENSMPUG00000015831	-	64	69.853	Mustela_putorius_furo
ENSCING00000022242	-	91	66.667	ENSNBRG00000010911	-	65	63.522	Neolamprologus_brichardi
ENSCING00000022242	-	100	63.522	ENSORLG00000017510	-	67	63.522	Oryzias_latipes
ENSCING00000022242	-	96	54.605	ENSPTIG00000022093	-	72	58.904	Panthera_tigris_altaica
ENSCING00000022242	-	92	62.585	ENSPMGG00000009036	-	73	67.949	Periophthalmus_magnuspinnatus
ENSCING00000022242	-	91	66.667	ENSPNYG00000005058	-	67	63.522	Pundamilia_nyererei
ENSCING00000022242	-	94	66.443	ENSSBOG00000019884	SRRM1	96	72.368	Saimiri_boliviensis_boliviensis
ENSCING00000022242	-	88	65.000	ENSSMAG00000009318	-	58	66.912	Scophthalmus_maximus