EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000022336 (Gene tree)
Gene ID: 100177034
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 8434 bases
Position: chr11:3915685-3924118
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000032654	XRN_N	PF03159.18	5.2e-99	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000033909	-	2628	-	ENSCINP00000032654	832 (aa)	-	H2XSM0

Gene Model

Click here to download ENSCING00000022336's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03008	Ribosome biogenesis in eukaryotes	KEGG
cin03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000022336's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000022336	-	100	60.501	ENSG00000088930	XRN2	86	60.143	Homo_sapiens
ENSCING00000022336	-	100	60.664	ENSAPOG00000009818	xrn2	85	60.071	Acanthochromis_polyacanthus
ENSCING00000022336	-	100	60.859	ENSAMEG00000012581	XRN2	86	60.501	Ailuropoda_melanoleuca
ENSCING00000022336	-	100	59.053	ENSACIG00000015047	xrn2	91	63.673	Amphilophus_citrinellus
ENSCING00000022336	-	100	60.545	ENSAOCG00000023632	xrn2	85	59.953	Amphiprion_ocellaris
ENSCING00000022336	-	100	60.427	ENSAPEG00000014871	xrn2	84	59.834	Amphiprion_percula
ENSCING00000022336	-	100	60.259	ENSATEG00000001273	xrn2	86	59.693	Anabas_testudineus
ENSCING00000022336	-	97	59.926	ENSAPLG00000013869	XRN2	86	59.433	Anas_platyrhynchos
ENSCING00000022336	-	100	58.950	ENSACAG00000005565	XRN2	85	58.353	Anolis_carolinensis
ENSCING00000022336	-	100	60.573	ENSANAG00000020126	XRN2	86	60.215	Aotus_nancymaae
ENSCING00000022336	-	100	59.408	ENSACLG00000010522	xrn2	96	68.333	Astatotilapia_calliptera
ENSCING00000022336	-	100	60.520	ENSAMXG00000018301	xrn2	86	60.213	Astyanax_mexicanus
ENSCING00000022336	-	100	60.859	ENSBTAG00000011304	XRN2	86	60.621	Bos_taurus
ENSCING00000022336	-	100	51.628	WBGene00006964	xrn-2	86	51.512	Caenorhabditis_elegans
ENSCING00000022336	-	100	60.573	ENSCJAG00000005611	XRN2	86	60.215	Callithrix_jacchus
ENSCING00000022336	-	100	60.859	ENSCAFG00000005185	XRN2	86	60.501	Canis_familiaris
ENSCING00000022336	-	100	60.859	ENSCAFG00020027479	XRN2	86	60.501	Canis_lupus_dingo
ENSCING00000022336	-	100	60.979	ENSCHIG00000006921	XRN2	86	60.621	Capra_hircus
ENSCING00000022336	-	100	59.905	ENSTSYG00000008315	XRN2	86	59.259	Carlito_syrichta
ENSCING00000022336	-	97	49.144	ENSCAPG00000010773	XRN2	84	49.630	Cavia_aperea
ENSCING00000022336	-	100	60.501	ENSCPOG00000009407	XRN2	86	60.143	Cavia_porcellus
ENSCING00000022336	-	100	60.621	ENSCATG00000040350	XRN2	87	60.263	Cercocebus_atys
ENSCING00000022336	-	100	60.263	ENSCLAG00000013419	XRN2	86	59.905	Chinchilla_lanigera
ENSCING00000022336	-	100	60.621	ENSCSAG00000011094	XRN2	86	60.263	Chlorocebus_sabaeus
ENSCING00000022336	-	71	75.936	ENSCHOG00000013404	XRN2	63	75.936	Choloepus_hoffmanni
ENSCING00000022336	-	100	61.290	ENSCPBG00000023533	XRN2	85	60.812	Chrysemys_picta_bellii
ENSCING00000022336	-	100	83.035	ENSCSAVG00000011217	-	100	82.252	Ciona_savignyi
ENSCING00000022336	-	100	60.621	ENSCANG00000040240	XRN2	86	60.263	Colobus_angolensis_palliatus
ENSCING00000022336	-	100	60.263	ENSCGRG00001010676	Xrn2	88	59.905	Cricetulus_griseus_chok1gshd
ENSCING00000022336	-	97	59.337	ENSCGRG00000006378	Xrn2	85	58.968	Cricetulus_griseus_crigri
ENSCING00000022336	-	61	59.064	ENSCSEG00000005628	xrn2	97	60.241	Cynoglossus_semilaevis
ENSCING00000022336	-	100	58.726	ENSCVAG00000018999	xrn2	94	65.294	Cyprinodon_variegatus
ENSCING00000022336	-	100	60.854	ENSDARG00000101900	xrn2	92	66.800	Danio_rerio
ENSCING00000022336	-	100	60.382	ENSDNOG00000001895	XRN2	86	60.024	Dasypus_novemcinctus
ENSCING00000022336	-	100	59.785	ENSDORG00000005434	Xrn2	86	59.427	Dipodomys_ordii
ENSCING00000022336	-	100	54.197	FBgn0031868	Rat1	87	54.197	Drosophila_melanogaster
ENSCING00000022336	-	100	52.392	ENSETEG00000001740	XRN2	86	52.033	Echinops_telfairi
ENSCING00000022336	-	98	59.259	ENSEBUG00000016136	xrn2	100	59.140	Eptatretus_burgeri
ENSCING00000022336	-	100	60.621	ENSEASG00005002484	XRN2	86	60.263	Equus_asinus_asinus
ENSCING00000022336	-	92	80.769	ENSECAG00000018988	XRN2	82	80.769	Equus_caballus
ENSCING00000022336	-	69	80.000	ENSEEUG00000009265	XRN2	61	80.000	Erinaceus_europaeus
ENSCING00000022336	-	100	61.893	ENSELUG00000000552	xrn2	84	61.183	Esox_lucius
ENSCING00000022336	-	100	60.859	ENSFCAG00000007970	XRN2	86	60.501	Felis_catus
ENSCING00000022336	-	100	60.791	ENSFALG00000004508	XRN2	86	60.312	Ficedula_albicollis
ENSCING00000022336	-	100	60.740	ENSFDAG00000016311	XRN2	86	60.382	Fukomys_damarensis
ENSCING00000022336	-	61	58.745	ENSFHEG00000013039	xrn2	93	61.983	Fundulus_heteroclitus
ENSCING00000022336	-	100	58.273	ENSGMOG00000013436	xrn2	99	57.674	Gadus_morhua
ENSCING00000022336	-	100	60.479	ENSGALG00000008372	XRN2	86	60.000	Gallus_gallus
ENSCING00000022336	-	100	60.592	ENSGAFG00000014284	xrn2	94	67.857	Gambusia_affinis
ENSCING00000022336	-	100	59.737	ENSGACG00000011870	xrn2	91	66.398	Gasterosteus_aculeatus
ENSCING00000022336	-	100	61.649	ENSGAGG00000004884	XRN2	85	60.932	Gopherus_agassizii
ENSCING00000022336	-	100	60.621	ENSGGOG00000013738	XRN2	86	60.263	Gorilla_gorilla
ENSCING00000022336	-	61	63.289	ENSHBUG00000005077	xrn2	96	68.333	Haplochromis_burtoni
ENSCING00000022336	-	100	59.666	ENSHGLG00000014831	XRN2	86	59.308	Heterocephalus_glaber_female
ENSCING00000022336	-	100	59.666	ENSHGLG00100013130	XRN2	86	59.308	Heterocephalus_glaber_male
ENSCING00000022336	-	100	60.190	ENSHCOG00000011994	xrn2	90	58.373	Hippocampus_comes
ENSCING00000022336	-	100	59.811	ENSIPUG00000006639	xrn2	86	59.622	Ictalurus_punctatus
ENSCING00000022336	-	100	60.740	ENSSTOG00000000589	XRN2	86	60.382	Ictidomys_tridecemlineatus
ENSCING00000022336	-	100	60.335	ENSJJAG00000022128	Xrn2	86	59.976	Jaculus_jaculus
ENSCING00000022336	-	61	64.844	ENSLBEG00000010041	xrn2	97	65.191	Labrus_bergylta
ENSCING00000022336	-	97	60.197	ENSLACG00000008307	XRN2	97	59.780	Latimeria_chalumnae
ENSCING00000022336	-	100	59.928	ENSLOCG00000016874	xrn2	91	59.166	Lepisosteus_oculatus
ENSCING00000022336	-	100	60.263	ENSLAFG00000014624	XRN2	86	59.905	Loxodonta_africana
ENSCING00000022336	-	100	60.621	ENSMFAG00000038122	XRN2	86	60.263	Macaca_fascicularis
ENSCING00000022336	-	100	60.621	ENSMMUG00000011405	XRN2	86	60.263	Macaca_mulatta
ENSCING00000022336	-	100	60.621	ENSMNEG00000040626	XRN2	86	60.263	Macaca_nemestrina
ENSCING00000022336	-	100	60.621	ENSMLEG00000041897	XRN2	86	60.263	Mandrillus_leucophaeus
ENSCING00000022336	-	100	60.812	ENSMAMG00000008633	xrn2	86	59.929	Mastacembelus_armatus
ENSCING00000022336	-	100	61.065	ENSMZEG00005022362	xrn2	91	63.905	Maylandia_zebra
ENSCING00000022336	-	100	60.072	ENSMGAG00000003196	XRN2	86	59.595	Meleagris_gallopavo
ENSCING00000022336	-	100	60.382	ENSMAUG00000021842	Xrn2	86	60.024	Mesocricetus_auratus
ENSCING00000022336	-	100	60.263	ENSMICG00000008126	XRN2	86	59.905	Microcebus_murinus
ENSCING00000022336	-	100	59.905	ENSMOCG00000012588	Xrn2	86	59.547	Microtus_ochrogaster
ENSCING00000022336	-	100	59.693	ENSMMOG00000017576	xrn2	92	63.116	Mola_mola
ENSCING00000022336	-	100	59.880	ENSMODG00000006163	XRN2	86	59.521	Monodelphis_domestica
ENSCING00000022336	-	100	60.165	ENSMALG00000011355	xrn2	92	66.142	Monopterus_albus
ENSCING00000022336	-	100	60.024	MGP_CAROLIEiJ_G0024400	Xrn2	86	59.666	Mus_caroli
ENSCING00000022336	-	100	60.024	ENSMUSG00000027433	Xrn2	86	59.666	Mus_musculus
ENSCING00000022336	-	100	60.024	MGP_PahariEiJ_G0025843	Xrn2	86	59.666	Mus_pahari
ENSCING00000022336	-	100	60.024	MGP_SPRETEiJ_G0025318	Xrn2	74	72.269	Mus_spretus
ENSCING00000022336	-	100	59.649	ENSMPUG00000001198	XRN2	80	59.298	Mustela_putorius_furo
ENSCING00000022336	-	100	60.526	ENSMLUG00000001536	XRN2	86	60.287	Myotis_lucifugus
ENSCING00000022336	-	100	59.618	ENSNGAG00000018138	Xrn2	86	59.379	Nannospalax_galili
ENSCING00000022336	-	100	61.493	ENSNBRG00000008062	xrn2	96	68.333	Neolamprologus_brichardi
ENSCING00000022336	-	100	60.501	ENSNLEG00000009991	XRN2	86	60.143	Nomascus_leucogenys
ENSCING00000022336	-	60	64.444	ENSMEUG00000008622	-	53	64.444	Notamacropus_eugenii
ENSCING00000022336	-	100	60.501	ENSODEG00000010745	-	86	60.143	Octodon_degus
ENSCING00000022336	-	98	56.000	ENSODEG00000000860	-	87	55.636	Octodon_degus
ENSCING00000022336	-	100	61.256	ENSONIG00000018720	xrn2	85	60.263	Oreochromis_niloticus
ENSCING00000022336	-	100	60.479	ENSOANG00000015673	XRN2	86	60.120	Ornithorhynchus_anatinus
ENSCING00000022336	-	100	60.740	ENSOCUG00000013468	XRN2	86	60.382	Oryctolagus_cuniculus
ENSCING00000022336	-	100	60.731	ENSORLG00000017213	xrn2	93	59.670	Oryzias_latipes
ENSCING00000022336	-	100	60.731	ENSORLG00020001824	xrn2	86	59.670	Oryzias_latipes_hni
ENSCING00000022336	-	100	60.495	ENSORLG00015019747	xrn2	86	59.434	Oryzias_latipes_hsok
ENSCING00000022336	-	100	60.495	ENSOMEG00000019820	xrn2	85	59.338	Oryzias_melastigma
ENSCING00000022336	-	100	60.310	ENSOGAG00000001068	XRN2	86	59.952	Otolemur_garnettii
ENSCING00000022336	-	97	60.468	ENSOARG00000004443	XRN2	85	60.099	Ovis_aries
ENSCING00000022336	-	100	60.621	ENSPPAG00000033549	XRN2	86	60.263	Pan_paniscus
ENSCING00000022336	-	100	60.859	ENSPPRG00000008732	XRN2	86	60.501	Panthera_pardus
ENSCING00000022336	-	97	60.345	ENSPTIG00000015683	XRN2	83	59.975	Panthera_tigris_altaica
ENSCING00000022336	-	100	60.621	ENSPTRG00000013308	XRN2	86	60.263	Pan_troglodytes
ENSCING00000022336	-	100	60.621	ENSPANG00000018088	XRN2	86	60.263	Papio_anubis
ENSCING00000022336	-	100	60.947	ENSPKIG00000016889	xrn2	85	60.592	Paramormyrops_kingsleyae
ENSCING00000022336	-	94	60.281	ENSPSIG00000014666	XRN2	99	59.642	Pelodiscus_sinensis
ENSCING00000022336	-	100	59.905	ENSPEMG00000000111	Xrn2	86	59.666	Peromyscus_maniculatus_bairdii
ENSCING00000022336	-	100	60.355	ENSPFOG00000004182	xrn2	86	59.450	Poecilia_formosa
ENSCING00000022336	-	100	60.355	ENSPLAG00000007351	xrn2	92	59.172	Poecilia_latipinna
ENSCING00000022336	-	94	59.292	ENSPMEG00000011798	xrn2	84	58.028	Poecilia_mexicana
ENSCING00000022336	-	100	60.592	ENSPREG00000012452	xrn2	92	59.408	Poecilia_reticulata
ENSCING00000022336	-	100	60.501	ENSPPYG00000010755	XRN2	86	60.143	Pongo_abelii
ENSCING00000022336	-	100	56.392	ENSPCAG00000011191	XRN2	86	56.033	Procavia_capensis
ENSCING00000022336	-	100	55.131	ENSPCOG00000016468	XRN2	85	54.773	Propithecus_coquereli
ENSCING00000022336	-	91	54.595	ENSPVAG00000004596	XRN2	78	54.595	Pteropus_vampyrus
ENSCING00000022336	-	100	59.408	ENSPNYG00000001765	xrn2	91	61.144	Pundamilia_nyererei
ENSCING00000022336	-	100	59.929	ENSPNAG00000010956	xrn2	85	59.150	Pygocentrus_nattereri
ENSCING00000022336	-	100	60.382	ENSRNOG00000011785	Xrn2	86	60.024	Rattus_norvegicus
ENSCING00000022336	-	100	60.621	ENSRBIG00000036193	XRN2	99	60.263	Rhinopithecus_bieti
ENSCING00000022336	-	100	60.621	ENSRROG00000044400	XRN2	78	60.263	Rhinopithecus_roxellana
ENSCING00000022336	-	82	52.432	YOR048C	RAT1	59	53.333	Saccharomyces_cerevisiae
ENSCING00000022336	-	100	60.693	ENSSBOG00000021014	XRN2	86	60.335	Saimiri_boliviensis_boliviensis
ENSCING00000022336	-	100	61.065	ENSSFOG00015001091	xrn2	86	60.710	Scleropages_formosus
ENSCING00000022336	-	100	60.000	ENSSMAG00000007834	xrn2	84	59.431	Scophthalmus_maximus
ENSCING00000022336	-	100	60.047	ENSSDUG00000012802	xrn2	94	59.529	Seriola_dumerili
ENSCING00000022336	-	100	61.383	ENSSLDG00000021273	xrn2	93	60.787	Seriola_lalandi_dorsalis
ENSCING00000022336	-	67	80.000	ENSSARG00000005859	-	58	80.000	Sorex_araneus
ENSCING00000022336	-	100	58.901	ENSSPUG00000005485	XRN2	84	58.542	Sphenodon_punctatus
ENSCING00000022336	-	100	60.308	ENSSPAG00000016027	xrn2	85	59.716	Stegastes_partitus
ENSCING00000022336	-	100	59.666	ENSSSCG00000007109	XRN2	86	59.308	Sus_scrofa
ENSCING00000022336	-	100	59.547	ENSTGUG00000007535	XRN2	86	59.069	Taeniopygia_guttata
ENSCING00000022336	-	100	60.000	ENSTRUG00000015489	xrn2	84	59.102	Takifugu_rubripes
ENSCING00000022336	-	100	61.098	ENSTNIG00000010712	xrn2	86	60.024	Tetraodon_nigroviridis
ENSCING00000022336	-	100	60.476	ENSTBEG00000004119	XRN2	86	60.238	Tupaia_belangeri
ENSCING00000022336	-	92	64.464	ENSTTRG00000009087	XRN2	79	63.929	Tursiops_truncatus
ENSCING00000022336	-	100	60.859	ENSUAMG00000024634	XRN2	93	57.706	Ursus_americanus
ENSCING00000022336	-	97	60.222	ENSUMAG00000004012	XRN2	81	59.852	Ursus_maritimus
ENSCING00000022336	-	87	55.130	ENSVPAG00000010694	XRN2	77	54.121	Vicugna_pacos
ENSCING00000022336	-	100	60.859	ENSVVUG00000012178	XRN2	86	60.501	Vulpes_vulpes
ENSCING00000022336	-	100	59.330	ENSXETG00000023501	xrn2	87	59.162	Xenopus_tropicalis
ENSCING00000022336	-	100	60.237	ENSXMAG00000000242	xrn2	94	68.095	Xiphophorus_maculatus