EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000022677 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 1530 bases
Position: chr13:1771346-1772875
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000032775	LSM	PF01423.22	9.5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000031462	-	684	-	ENSCINP00000032775	95 (aa)	-	H2XSZ1

Gene Model

Click here to download ENSCING00000022677's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000022677's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000022677	-	100	95.789	ENSG00000204392	LSM2	100	95.789	Homo_sapiens
ENSCING00000022677	-	100	95.789	ENSAPOG00000017967	si:ch73-14h10.2	100	95.789	Acanthochromis_polyacanthus
ENSCING00000022677	-	99	95.745	ENSAMEG00000006483	LSM2	100	95.745	Ailuropoda_melanoleuca
ENSCING00000022677	-	99	95.745	ENSACIG00000007795	si:ch73-14h10.2	62	95.745	Amphilophus_citrinellus
ENSCING00000022677	-	99	95.745	ENSAOCG00000006949	si:ch73-14h10.2	78	95.745	Amphiprion_ocellaris
ENSCING00000022677	-	99	95.745	ENSAPEG00000020375	si:ch73-14h10.2	87	95.745	Amphiprion_percula
ENSCING00000022677	-	100	95.789	ENSATEG00000011376	si:ch73-14h10.2	100	95.789	Anabas_testudineus
ENSCING00000022677	-	99	95.745	ENSACAG00000017281	LSM2	90	95.745	Anolis_carolinensis
ENSCING00000022677	-	100	95.789	ENSANAG00000028372	LSM2	100	95.789	Aotus_nancymaae
ENSCING00000022677	-	95	77.778	ENSANAG00000028033	-	95	77.778	Aotus_nancymaae
ENSCING00000022677	-	100	95.789	ENSACLG00000024717	smx5	100	95.789	Astatotilapia_calliptera
ENSCING00000022677	-	100	95.789	ENSAMXG00000036868	si:ch73-14h10.2	100	95.789	Astyanax_mexicanus
ENSCING00000022677	-	100	95.789	ENSBTAG00000005634	LSM2	100	95.789	Bos_taurus
ENSCING00000022677	-	99	81.915	WBGene00001808	gut-2	97	81.915	Caenorhabditis_elegans
ENSCING00000022677	-	100	95.789	ENSCJAG00000040899	LSM2	100	95.789	Callithrix_jacchus
ENSCING00000022677	-	75	92.958	ENSCAFG00020016978	-	88	92.958	Canis_lupus_dingo
ENSCING00000022677	-	99	95.745	ENSCHIG00000016153	LSM2	100	95.745	Capra_hircus
ENSCING00000022677	-	100	95.789	ENSTSYG00000034844	LSM2	100	95.789	Carlito_syrichta
ENSCING00000022677	-	95	92.222	ENSTSYG00000030015	-	96	92.222	Carlito_syrichta
ENSCING00000022677	-	76	94.444	ENSCAPG00000009970	LSM2	92	94.444	Cavia_aperea
ENSCING00000022677	-	100	95.789	ENSCPOG00000021053	LSM2	100	95.789	Cavia_porcellus
ENSCING00000022677	-	100	95.789	ENSCCAG00000024276	LSM2	100	95.789	Cebus_capucinus
ENSCING00000022677	-	100	95.789	ENSCATG00000013737	LSM2	100	95.789	Cercocebus_atys
ENSCING00000022677	-	100	95.789	ENSCLAG00000008081	LSM2	100	95.789	Chinchilla_lanigera
ENSCING00000022677	-	100	95.789	ENSCSAG00000008800	LSM2	100	95.789	Chlorocebus_sabaeus
ENSCING00000022677	-	100	95.789	ENSCHOG00000007702	LSM2	100	95.789	Choloepus_hoffmanni
ENSCING00000022677	-	100	95.789	ENSCANG00000039576	LSM2	100	95.789	Colobus_angolensis_palliatus
ENSCING00000022677	-	100	95.789	ENSCGRG00001013932	Lsm2	100	95.789	Cricetulus_griseus_chok1gshd
ENSCING00000022677	-	76	94.444	ENSCGRG00000013311	Lsm2	62	94.444	Cricetulus_griseus_crigri
ENSCING00000022677	-	100	95.789	ENSCSEG00000002911	si:ch73-14h10.2	100	95.789	Cynoglossus_semilaevis
ENSCING00000022677	-	99	95.745	ENSCVAG00000015394	si:ch73-14h10.2	89	95.745	Cyprinodon_variegatus
ENSCING00000022677	-	100	95.789	ENSDARG00000070867	smx5	100	95.789	Danio_rerio
ENSCING00000022677	-	99	95.745	ENSDNOG00000002633	LSM2	100	95.745	Dasypus_novemcinctus
ENSCING00000022677	-	100	95.789	ENSDORG00000026571	Lsm2	100	95.789	Dipodomys_ordii
ENSCING00000022677	-	100	91.579	FBgn0036277	CG10418	100	91.579	Drosophila_melanogaster
ENSCING00000022677	-	99	95.745	ENSEASG00005015670	LSM2	79	95.745	Equus_asinus_asinus
ENSCING00000022677	-	99	95.745	ENSECAG00000018791	LSM2	79	95.745	Equus_caballus
ENSCING00000022677	-	100	95.789	ENSELUG00000008241	smx5	100	95.789	Esox_lucius
ENSCING00000022677	-	100	95.789	ENSFCAG00000045887	LSM2	100	95.789	Felis_catus
ENSCING00000022677	-	100	95.789	ENSFDAG00000000390	LSM2	100	95.789	Fukomys_damarensis
ENSCING00000022677	-	99	92.708	ENSFHEG00000009619	si:ch73-14h10.2	100	92.708	Fundulus_heteroclitus
ENSCING00000022677	-	99	95.745	ENSGMOG00000019208	si:ch73-14h10.2	100	95.745	Gadus_morhua
ENSCING00000022677	-	100	95.789	ENSGAFG00000017286	si:ch73-14h10.2	100	95.789	Gambusia_affinis
ENSCING00000022677	-	100	95.789	ENSGACG00000003827	si:ch73-14h10.2	100	95.789	Gasterosteus_aculeatus
ENSCING00000022677	-	100	95.789	ENSGAGG00000012458	LSM2	100	95.789	Gopherus_agassizii
ENSCING00000022677	-	100	95.789	ENSGGOG00000011383	LSM2	100	95.789	Gorilla_gorilla
ENSCING00000022677	-	100	95.789	ENSHGLG00000011299	LSM2	100	95.789	Heterocephalus_glaber_female
ENSCING00000022677	-	100	95.789	ENSHGLG00100017194	LSM2	100	95.789	Heterocephalus_glaber_male
ENSCING00000022677	-	100	95.789	ENSHCOG00000014057	si:ch73-14h10.2	100	95.789	Hippocampus_comes
ENSCING00000022677	-	100	95.789	ENSIPUG00000010539	lsm2	100	95.789	Ictalurus_punctatus
ENSCING00000022677	-	100	95.789	ENSSTOG00000013144	LSM2	100	95.789	Ictidomys_tridecemlineatus
ENSCING00000022677	-	94	73.034	ENSJJAG00000019477	-	100	73.034	Jaculus_jaculus
ENSCING00000022677	-	100	95.789	ENSKMAG00000014909	si:ch73-14h10.2	100	95.789	Kryptolebias_marmoratus
ENSCING00000022677	-	99	94.681	ENSLBEG00000025781	si:ch73-14h10.2	98	94.681	Labrus_bergylta
ENSCING00000022677	-	100	95.789	ENSLACG00000015064	LSM2	100	95.789	Latimeria_chalumnae
ENSCING00000022677	-	100	95.789	ENSLOCG00000005228	si:ch73-14h10.2	100	95.789	Lepisosteus_oculatus
ENSCING00000022677	-	99	95.745	ENSLAFG00000016139	LSM2	100	95.745	Loxodonta_africana
ENSCING00000022677	-	100	95.789	ENSMFAG00000001016	LSM2	100	95.789	Macaca_fascicularis
ENSCING00000022677	-	99	77.660	ENSMMUG00000045473	-	97	77.660	Macaca_mulatta
ENSCING00000022677	-	100	95.789	ENSMMUG00000006832	LSM2	100	95.789	Macaca_mulatta
ENSCING00000022677	-	79	80.000	ENSMNEG00000040973	-	91	80.000	Macaca_nemestrina
ENSCING00000022677	-	100	95.789	ENSMNEG00000045355	LSM2	100	95.789	Macaca_nemestrina
ENSCING00000022677	-	99	76.596	ENSMLEG00000031181	-	97	76.596	Mandrillus_leucophaeus
ENSCING00000022677	-	100	95.789	ENSMLEG00000037369	-	100	95.789	Mandrillus_leucophaeus
ENSCING00000022677	-	100	95.789	ENSMAMG00000010053	si:ch73-14h10.2	73	95.789	Mastacembelus_armatus
ENSCING00000022677	-	99	93.750	ENSMZEG00005008688	si:ch73-14h10.2	100	93.750	Maylandia_zebra
ENSCING00000022677	-	100	95.789	ENSMAUG00000021966	Lsm2	100	95.789	Mesocricetus_auratus
ENSCING00000022677	-	76	73.611	ENSMICG00000046764	-	92	73.611	Microcebus_murinus
ENSCING00000022677	-	100	95.789	ENSMOCG00000015306	Lsm2	100	95.789	Microtus_ochrogaster
ENSCING00000022677	-	99	94.681	ENSMMOG00000005603	si:ch73-14h10.2	100	94.681	Mola_mola
ENSCING00000022677	-	99	95.745	ENSMODG00000015177	LSM2	99	95.745	Monodelphis_domestica
ENSCING00000022677	-	100	95.789	ENSMALG00000016490	si:ch73-14h10.2	100	95.789	Monopterus_albus
ENSCING00000022677	-	100	95.789	MGP_CAROLIEiJ_G0021490	Lsm2	100	95.789	Mus_caroli
ENSCING00000022677	-	100	95.789	ENSMUSG00000007050	Lsm2	100	95.789	Mus_musculus
ENSCING00000022677	-	100	95.789	MGP_PahariEiJ_G0020485	Lsm2	100	95.789	Mus_pahari
ENSCING00000022677	-	100	95.789	MGP_SPRETEiJ_G0022395	Lsm2	100	95.789	Mus_spretus
ENSCING00000022677	-	100	95.789	ENSNGAG00000003997	Lsm2	100	95.789	Nannospalax_galili
ENSCING00000022677	-	99	93.750	ENSNBRG00000012904	si:ch73-14h10.2	100	93.750	Neolamprologus_brichardi
ENSCING00000022677	-	100	95.789	ENSNLEG00000035542	LSM2	100	95.789	Nomascus_leucogenys
ENSCING00000022677	-	75	94.366	ENSMEUG00000003419	LSM2	100	94.366	Notamacropus_eugenii
ENSCING00000022677	-	100	95.789	ENSOPRG00000003668	LSM2	100	95.789	Ochotona_princeps
ENSCING00000022677	-	100	95.789	ENSODEG00000017583	LSM2	100	95.789	Octodon_degus
ENSCING00000022677	-	100	95.789	ENSONIG00000019321	si:ch73-14h10.2	100	95.789	Oreochromis_niloticus
ENSCING00000022677	-	99	95.745	ENSOANG00000005398	LSM2	100	95.745	Ornithorhynchus_anatinus
ENSCING00000022677	-	100	95.789	ENSOCUG00000002583	LSM2	100	95.789	Oryctolagus_cuniculus
ENSCING00000022677	-	100	95.789	ENSORLG00000029858	si:ch73-14h10.2	100	95.789	Oryzias_latipes
ENSCING00000022677	-	100	73.387	ENSORLG00015000465	si:ch73-14h10.2	100	73.387	Oryzias_latipes_hsok
ENSCING00000022677	-	100	95.789	ENSOMEG00000002892	si:ch73-14h10.2	100	95.789	Oryzias_melastigma
ENSCING00000022677	-	99	95.745	ENSOARG00000004575	LSM2	100	95.745	Ovis_aries
ENSCING00000022677	-	100	95.789	ENSPPAG00000032431	LSM2	100	95.789	Pan_paniscus
ENSCING00000022677	-	79	81.333	ENSPPAG00000043941	-	93	81.333	Pan_paniscus
ENSCING00000022677	-	100	95.789	ENSPPRG00000015353	LSM2	100	95.789	Panthera_pardus
ENSCING00000022677	-	99	95.745	ENSPTIG00000010303	LSM2	99	95.745	Panthera_tigris_altaica
ENSCING00000022677	-	100	95.789	ENSPTRG00000017986	LSM2	100	95.789	Pan_troglodytes
ENSCING00000022677	-	100	95.789	ENSPANG00000024577	LSM2	100	95.789	Papio_anubis
ENSCING00000022677	-	100	95.789	ENSPKIG00000007028	si:ch73-14h10.2	100	95.789	Paramormyrops_kingsleyae
ENSCING00000022677	-	99	95.745	ENSPSIG00000004458	LSM2	78	95.745	Pelodiscus_sinensis
ENSCING00000022677	-	99	93.617	ENSPMGG00000018511	si:ch73-14h10.2	100	93.617	Periophthalmus_magnuspinnatus
ENSCING00000022677	-	99	95.745	ENSPCIG00000018560	-	95	95.745	Phascolarctos_cinereus
ENSCING00000022677	-	100	95.789	ENSPFOG00000001621	si:ch73-14h10.2	100	95.789	Poecilia_formosa
ENSCING00000022677	-	100	95.789	ENSPLAG00000017165	si:ch73-14h10.2	100	95.789	Poecilia_latipinna
ENSCING00000022677	-	100	95.789	ENSPMEG00000019574	si:ch73-14h10.2	100	95.789	Poecilia_mexicana
ENSCING00000022677	-	99	94.681	ENSPREG00000016534	si:ch73-14h10.2	100	94.681	Poecilia_reticulata
ENSCING00000022677	-	100	95.789	ENSPPYG00000016461	-	54	95.789	Pongo_abelii
ENSCING00000022677	-	100	95.789	ENSPCAG00000013737	LSM2	100	95.789	Procavia_capensis
ENSCING00000022677	-	100	95.789	ENSPCOG00000020134	LSM2	100	95.789	Propithecus_coquereli
ENSCING00000022677	-	100	95.789	ENSPVAG00000012405	LSM2	100	95.789	Pteropus_vampyrus
ENSCING00000022677	-	100	95.789	ENSPNYG00000019298	smx5	100	95.789	Pundamilia_nyererei
ENSCING00000022677	-	100	95.789	ENSPNAG00000027769	si:ch73-14h10.2	100	95.789	Pygocentrus_nattereri
ENSCING00000022677	-	56	92.453	ENSRNOG00000011065	AC126899.1	76	92.453	Rattus_norvegicus
ENSCING00000022677	-	100	95.789	ENSRNOG00000048725	Lsm2	100	95.789	Rattus_norvegicus
ENSCING00000022677	-	79	81.333	ENSRBIG00000011356	-	91	81.333	Rhinopithecus_bieti
ENSCING00000022677	-	100	95.789	ENSRBIG00000010172	LSM2	100	95.789	Rhinopithecus_bieti
ENSCING00000022677	-	79	81.333	ENSRROG00000030708	-	91	81.333	Rhinopithecus_roxellana
ENSCING00000022677	-	100	95.789	ENSRROG00000030345	LSM2	100	95.789	Rhinopithecus_roxellana
ENSCING00000022677	-	100	62.105	YBL026W	LSM2	100	62.105	Saccharomyces_cerevisiae
ENSCING00000022677	-	100	95.789	ENSSBOG00000018943	LSM2	100	95.789	Saimiri_boliviensis_boliviensis
ENSCING00000022677	-	100	95.789	ENSSFOG00015006734	lsm2	100	95.789	Scleropages_formosus
ENSCING00000022677	-	100	95.789	ENSSMAG00000001122	si:ch73-14h10.2	100	95.789	Scophthalmus_maximus
ENSCING00000022677	-	100	95.789	ENSSDUG00000021605	smx5	100	95.789	Seriola_dumerili
ENSCING00000022677	-	100	95.789	ENSSLDG00000002765	si:ch73-14h10.2	100	95.789	Seriola_lalandi_dorsalis
ENSCING00000022677	-	100	95.789	ENSSPUG00000009631	LSM2	100	95.789	Sphenodon_punctatus
ENSCING00000022677	-	100	95.789	ENSSPAG00000016904	si:ch73-14h10.2	100	95.789	Stegastes_partitus
ENSCING00000022677	-	100	95.789	ENSSSCG00000039021	LSM2	100	95.789	Sus_scrofa
ENSCING00000022677	-	99	94.681	ENSTRUG00000002093	si:ch73-14h10.2	100	94.681	Takifugu_rubripes
ENSCING00000022677	-	69	93.939	ENSTNIG00000013770	si:ch73-14h10.2	99	93.939	Tetraodon_nigroviridis
ENSCING00000022677	-	100	95.789	ENSTTRG00000014131	LSM2	100	95.789	Tursiops_truncatus
ENSCING00000022677	-	99	95.745	ENSUMAG00000013425	LSM2	65	95.745	Ursus_maritimus
ENSCING00000022677	-	99	95.745	ENSVPAG00000001761	LSM2	100	95.745	Vicugna_pacos
ENSCING00000022677	-	79	93.333	ENSVVUG00000016264	-	93	93.333	Vulpes_vulpes
ENSCING00000022677	-	100	96.842	ENSXETG00000024077	lsm2	100	96.842	Xenopus_tropicalis
ENSCING00000022677	-	99	94.681	ENSXCOG00000006078	si:ch73-14h10.2	100	94.681	Xiphophorus_couchianus
ENSCING00000022677	-	99	94.681	ENSXMAG00000028018	si:ch73-14h10.2	100	94.681	Xiphophorus_maculatus