EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000022734 (Gene tree)
Gene ID: 100185360
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 624 bases
Position: chr2:420399-421022
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000033317	EXOSC1	PF10447.9	5.9e-17	1	1
ENSCINP00000033317	ECR1_N	PF14382.6	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000034451	-	624	-	ENSCINP00000033317	208 (aa)	-	H2XUI3

Gene Model

Click here to download ENSCING00000022734's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000022734's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000022734	-	89	56.150	ENSG00000171311	EXOSC1	95	56.150	Homo_sapiens
ENSCING00000022734	-	92	50.777	ENSAPOG00000007822	exosc1	99	50.777	Acanthochromis_polyacanthus
ENSCING00000022734	-	89	56.684	ENSAMEG00000000129	EXOSC1	95	56.684	Ailuropoda_melanoleuca
ENSCING00000022734	-	88	52.174	ENSACIG00000018956	exosc1	90	52.174	Amphilophus_citrinellus
ENSCING00000022734	-	92	50.777	ENSAOCG00000010699	exosc1	99	50.777	Amphiprion_ocellaris
ENSCING00000022734	-	86	42.458	ENSAPEG00000012690	exosc1	96	42.458	Amphiprion_percula
ENSCING00000022734	-	92	50.777	ENSATEG00000018683	exosc1	99	50.777	Anabas_testudineus
ENSCING00000022734	-	89	54.545	ENSACAG00000002101	EXOSC1	95	54.545	Anolis_carolinensis
ENSCING00000022734	-	89	56.150	ENSANAG00000034669	EXOSC1	95	56.150	Aotus_nancymaae
ENSCING00000022734	-	92	50.777	ENSACLG00000021243	exosc1	99	50.777	Astatotilapia_calliptera
ENSCING00000022734	-	92	53.368	ENSAMXG00000011116	exosc1	99	53.368	Astyanax_mexicanus
ENSCING00000022734	-	89	56.684	ENSBTAG00000012699	EXOSC1	95	56.684	Bos_taurus
ENSCING00000022734	-	78	32.584	WBGene00012966	exos-1	83	32.584	Caenorhabditis_elegans
ENSCING00000022734	-	89	55.615	ENSCJAG00000016586	EXOSC1	95	55.615	Callithrix_jacchus
ENSCING00000022734	-	89	56.684	ENSCAFG00000009068	EXOSC1	90	56.684	Canis_familiaris
ENSCING00000022734	-	89	56.684	ENSCAFG00020006002	EXOSC1	90	56.684	Canis_lupus_dingo
ENSCING00000022734	-	89	56.684	ENSCHIG00000015253	EXOSC1	95	56.684	Capra_hircus
ENSCING00000022734	-	89	55.615	ENSTSYG00000000760	EXOSC1	95	55.615	Carlito_syrichta
ENSCING00000022734	-	89	56.150	ENSCPOG00000001173	EXOSC1	95	56.150	Cavia_porcellus
ENSCING00000022734	-	89	32.828	ENSCCAG00000023986	EXOSC1	95	32.828	Cebus_capucinus
ENSCING00000022734	-	89	56.150	ENSCATG00000034114	EXOSC1	95	56.150	Cercocebus_atys
ENSCING00000022734	-	89	56.150	ENSCLAG00000002463	EXOSC1	95	56.150	Chinchilla_lanigera
ENSCING00000022734	-	89	55.615	ENSCSAG00000005870	EXOSC1	95	55.615	Chlorocebus_sabaeus
ENSCING00000022734	-	87	50.276	ENSCHOG00000006477	EXOSC1	96	50.276	Choloepus_hoffmanni
ENSCING00000022734	-	51	45.794	ENSCPBG00000011949	EXOSC1	88	45.794	Chrysemys_picta_bellii
ENSCING00000022734	-	93	71.134	ENSCSAVG00000010865	-	99	71.134	Ciona_savignyi
ENSCING00000022734	-	89	56.150	ENSCANG00000034159	EXOSC1	95	56.150	Colobus_angolensis_palliatus
ENSCING00000022734	-	89	55.615	ENSCGRG00001000335	Exosc1	95	55.615	Cricetulus_griseus_chok1gshd
ENSCING00000022734	-	89	55.615	ENSCGRG00000011602	Exosc1	95	55.615	Cricetulus_griseus_crigri
ENSCING00000022734	-	92	45.596	ENSCSEG00000007895	exosc1	95	45.596	Cynoglossus_semilaevis
ENSCING00000022734	-	90	51.064	ENSCVAG00000016748	exosc1	96	51.064	Cyprinodon_variegatus
ENSCING00000022734	-	92	52.850	ENSDARG00000059841	exosc1	99	52.850	Danio_rerio
ENSCING00000022734	-	67	54.930	ENSDNOG00000007983	EXOSC1	95	54.930	Dasypus_novemcinctus
ENSCING00000022734	-	89	55.615	ENSDORG00000016528	Exosc1	95	55.615	Dipodomys_ordii
ENSCING00000022734	-	97	39.320	FBgn0032346	Csl4	97	39.320	Drosophila_melanogaster
ENSCING00000022734	-	89	54.545	ENSETEG00000002469	-	95	54.545	Echinops_telfairi
ENSCING00000022734	-	90	50.794	ENSEBUG00000008164	exosc1	95	50.794	Eptatretus_burgeri
ENSCING00000022734	-	89	51.337	ENSEASG00005008684	EXOSC1	95	51.337	Equus_asinus_asinus
ENSCING00000022734	-	54	38.938	ENSECAG00000010621	EXOSC1	67	38.938	Equus_caballus
ENSCING00000022734	-	89	56.150	ENSEEUG00000005647	EXOSC1	95	56.150	Erinaceus_europaeus
ENSCING00000022734	-	88	52.432	ENSELUG00000017369	exosc1	98	42.051	Esox_lucius
ENSCING00000022734	-	89	56.684	ENSFCAG00000040563	EXOSC1	90	56.684	Felis_catus
ENSCING00000022734	-	89	52.406	ENSFALG00000008450	EXOSC1	95	52.406	Ficedula_albicollis
ENSCING00000022734	-	89	55.615	ENSFDAG00000000846	EXOSC1	95	55.615	Fukomys_damarensis
ENSCING00000022734	-	92	50.259	ENSFHEG00000009154	exosc1	99	50.259	Fundulus_heteroclitus
ENSCING00000022734	-	92	51.295	ENSGMOG00000008993	exosc1	99	51.295	Gadus_morhua
ENSCING00000022734	-	89	49.198	ENSGALG00000039917	EXOSC1	99	54.861	Gallus_gallus
ENSCING00000022734	-	92	50.259	ENSGAFG00000010265	exosc1	94	50.259	Gambusia_affinis
ENSCING00000022734	-	92	50.777	ENSGACG00000018936	exosc1	99	50.777	Gasterosteus_aculeatus
ENSCING00000022734	-	89	53.476	ENSGAGG00000019192	EXOSC1	95	53.476	Gopherus_agassizii
ENSCING00000022734	-	89	50.267	ENSGGOG00000003099	EXOSC1	95	50.267	Gorilla_gorilla
ENSCING00000022734	-	92	50.777	ENSHBUG00000017857	exosc1	99	50.777	Haplochromis_burtoni
ENSCING00000022734	-	89	55.615	ENSHGLG00000016927	EXOSC1	95	55.615	Heterocephalus_glaber_female
ENSCING00000022734	-	89	55.615	ENSHGLG00100012208	EXOSC1	95	55.615	Heterocephalus_glaber_male
ENSCING00000022734	-	92	50.777	ENSHCOG00000019882	exosc1	99	50.777	Hippocampus_comes
ENSCING00000022734	-	92	53.886	ENSIPUG00000007685	exosc1	99	53.886	Ictalurus_punctatus
ENSCING00000022734	-	89	56.150	ENSSTOG00000006615	EXOSC1	95	56.150	Ictidomys_tridecemlineatus
ENSCING00000022734	-	56	41.379	ENSSTOG00000029860	-	88	41.379	Ictidomys_tridecemlineatus
ENSCING00000022734	-	89	56.150	ENSJJAG00000013311	Exosc1	95	56.150	Jaculus_jaculus
ENSCING00000022734	-	92	51.295	ENSKMAG00000001202	exosc1	81	51.295	Kryptolebias_marmoratus
ENSCING00000022734	-	92	51.295	ENSLBEG00000011448	exosc1	99	51.295	Labrus_bergylta
ENSCING00000022734	-	92	40.704	ENSLOCG00000003776	exosc1	99	40.704	Lepisosteus_oculatus
ENSCING00000022734	-	89	55.080	ENSLAFG00000015983	EXOSC1	95	55.080	Loxodonta_africana
ENSCING00000022734	-	89	56.150	ENSMFAG00000001493	EXOSC1	95	56.150	Macaca_fascicularis
ENSCING00000022734	-	89	56.150	ENSMMUG00000020028	EXOSC1	95	50.267	Macaca_mulatta
ENSCING00000022734	-	89	56.150	ENSMNEG00000029816	EXOSC1	95	56.150	Macaca_nemestrina
ENSCING00000022734	-	89	51.337	ENSMLEG00000027643	EXOSC1	95	51.337	Mandrillus_leucophaeus
ENSCING00000022734	-	92	51.295	ENSMAMG00000012200	exosc1	99	51.295	Mastacembelus_armatus
ENSCING00000022734	-	92	50.777	ENSMZEG00005007042	exosc1	99	50.777	Maylandia_zebra
ENSCING00000022734	-	89	50.267	ENSMAUG00000020462	-	95	50.267	Mesocricetus_auratus
ENSCING00000022734	-	89	56.150	ENSMICG00000007664	EXOSC1	95	50.267	Microcebus_murinus
ENSCING00000022734	-	90	50.794	ENSMOCG00000017124	-	96	50.794	Microtus_ochrogaster
ENSCING00000022734	-	89	55.615	ENSMOCG00000006004	-	95	55.615	Microtus_ochrogaster
ENSCING00000022734	-	87	41.209	ENSMMOG00000021403	exosc1	93	41.209	Mola_mola
ENSCING00000022734	-	89	55.319	ENSMODG00000004213	EXOSC1	95	55.319	Monodelphis_domestica
ENSCING00000022734	-	88	51.630	ENSMALG00000007061	exosc1	92	51.630	Monopterus_albus
ENSCING00000022734	-	89	55.080	MGP_CAROLIEiJ_G0022959	Exosc1	95	55.080	Mus_caroli
ENSCING00000022734	-	89	55.080	ENSMUSG00000034321	Exosc1	95	55.080	Mus_musculus
ENSCING00000022734	-	89	55.615	MGP_PahariEiJ_G0014449	Exosc1	95	55.615	Mus_pahari
ENSCING00000022734	-	89	55.080	MGP_SPRETEiJ_G0023880	Exosc1	95	55.080	Mus_spretus
ENSCING00000022734	-	89	56.684	ENSMPUG00000017044	EXOSC1	95	56.684	Mustela_putorius_furo
ENSCING00000022734	-	89	56.150	ENSMLUG00000009228	EXOSC1	95	56.150	Myotis_lucifugus
ENSCING00000022734	-	89	54.545	ENSNGAG00000022033	Exosc1	95	54.545	Nannospalax_galili
ENSCING00000022734	-	92	40.415	ENSNBRG00000024007	exosc1	98	40.415	Neolamprologus_brichardi
ENSCING00000022734	-	89	55.615	ENSNLEG00000013872	EXOSC1	95	55.615	Nomascus_leucogenys
ENSCING00000022734	-	52	47.706	ENSMEUG00000002246	EXOSC1	94	47.706	Notamacropus_eugenii
ENSCING00000022734	-	89	55.615	ENSOPRG00000005065	EXOSC1	95	55.615	Ochotona_princeps
ENSCING00000022734	-	89	55.615	ENSODEG00000016709	EXOSC1	95	55.615	Octodon_degus
ENSCING00000022734	-	92	51.295	ENSONIG00000017683	exosc1	98	51.295	Oreochromis_niloticus
ENSCING00000022734	-	53	60.714	ENSOANG00000006563	EXOSC1	95	57.500	Ornithorhynchus_anatinus
ENSCING00000022734	-	89	51.872	ENSOCUG00000026461	-	95	51.872	Oryctolagus_cuniculus
ENSCING00000022734	-	89	55.851	ENSOCUG00000011898	-	95	55.851	Oryctolagus_cuniculus
ENSCING00000022734	-	92	49.485	ENSORLG00000011595	exosc1	99	49.485	Oryzias_latipes
ENSCING00000022734	-	92	49.485	ENSORLG00020005831	exosc1	99	49.485	Oryzias_latipes_hni
ENSCING00000022734	-	92	49.485	ENSORLG00015004317	exosc1	99	49.485	Oryzias_latipes_hsok
ENSCING00000022734	-	92	40.415	ENSOMEG00000013907	exosc1	98	40.415	Oryzias_melastigma
ENSCING00000022734	-	89	55.615	ENSOGAG00000016259	EXOSC1	95	55.615	Otolemur_garnettii
ENSCING00000022734	-	89	56.684	ENSOARG00000010136	EXOSC1	95	56.684	Ovis_aries
ENSCING00000022734	-	89	51.053	ENSPPAG00000039842	EXOSC1	95	51.053	Pan_paniscus
ENSCING00000022734	-	89	56.684	ENSPPRG00000023366	EXOSC1	95	56.684	Panthera_pardus
ENSCING00000022734	-	89	56.684	ENSPTIG00000017701	EXOSC1	95	56.684	Panthera_tigris_altaica
ENSCING00000022734	-	89	56.150	ENSPTRG00000002808	EXOSC1	95	56.150	Pan_troglodytes
ENSCING00000022734	-	89	56.150	ENSPANG00000021324	EXOSC1	95	56.150	Papio_anubis
ENSCING00000022734	-	92	53.368	ENSPKIG00000016037	exosc1	99	53.368	Paramormyrops_kingsleyae
ENSCING00000022734	-	70	48.630	ENSPSIG00000013571	EXOSC1	97	51.667	Pelodiscus_sinensis
ENSCING00000022734	-	92	45.078	ENSPMGG00000014002	exosc1	99	45.078	Periophthalmus_magnuspinnatus
ENSCING00000022734	-	89	55.615	ENSPEMG00000010710	-	95	55.615	Peromyscus_maniculatus_bairdii
ENSCING00000022734	-	88	52.174	ENSPMAG00000000195	exosc1	94	52.174	Petromyzon_marinus
ENSCING00000022734	-	89	55.615	ENSPCIG00000002210	EXOSC1	94	55.615	Phascolarctos_cinereus
ENSCING00000022734	-	90	50.532	ENSPFOG00000006755	exosc1	92	50.532	Poecilia_formosa
ENSCING00000022734	-	90	50.532	ENSPLAG00000005880	exosc1	96	50.532	Poecilia_latipinna
ENSCING00000022734	-	90	50.532	ENSPMEG00000015598	exosc1	92	50.532	Poecilia_mexicana
ENSCING00000022734	-	90	45.745	ENSPREG00000000405	exosc1	91	45.745	Poecilia_reticulata
ENSCING00000022734	-	89	55.615	ENSPPYG00000002531	EXOSC1	95	55.615	Pongo_abelii
ENSCING00000022734	-	89	55.615	ENSPCAG00000009135	EXOSC1	95	55.615	Procavia_capensis
ENSCING00000022734	-	89	50.802	ENSPCOG00000027539	EXOSC1	95	50.802	Propithecus_coquereli
ENSCING00000022734	-	89	56.150	ENSPVAG00000003372	EXOSC1	95	56.150	Pteropus_vampyrus
ENSCING00000022734	-	92	50.777	ENSPNYG00000021745	exosc1	99	50.777	Pundamilia_nyererei
ENSCING00000022734	-	92	53.886	ENSPNAG00000001944	exosc1	99	53.886	Pygocentrus_nattereri
ENSCING00000022734	-	89	55.615	ENSRNOG00000048708	Exosc1	95	55.615	Rattus_norvegicus
ENSCING00000022734	-	89	56.150	ENSRBIG00000035618	EXOSC1	95	56.150	Rhinopithecus_bieti
ENSCING00000022734	-	89	56.150	ENSRROG00000032589	EXOSC1	95	50.267	Rhinopithecus_roxellana
ENSCING00000022734	-	61	36.420	YNL232W	CSL4	55	36.420	Saccharomyces_cerevisiae
ENSCING00000022734	-	89	56.150	ENSSBOG00000000359	EXOSC1	95	56.150	Saimiri_boliviensis_boliviensis
ENSCING00000022734	-	69	56.552	ENSSHAG00000018219	EXOSC1	99	56.552	Sarcophilus_harrisii
ENSCING00000022734	-	92	54.404	ENSSFOG00015009069	exosc1	99	54.404	Scleropages_formosus
ENSCING00000022734	-	90	53.191	ENSSFOG00015016289	-	96	53.191	Scleropages_formosus
ENSCING00000022734	-	92	51.295	ENSSMAG00000003721	exosc1	99	51.295	Scophthalmus_maximus
ENSCING00000022734	-	92	50.777	ENSSDUG00000002993	exosc1	99	50.777	Seriola_dumerili
ENSCING00000022734	-	92	50.777	ENSSLDG00000025181	exosc1	99	50.777	Seriola_lalandi_dorsalis
ENSCING00000022734	-	89	50.267	ENSSARG00000000162	EXOSC1	95	50.267	Sorex_araneus
ENSCING00000022734	-	90	52.660	ENSSPUG00000012263	EXOSC1	96	52.660	Sphenodon_punctatus
ENSCING00000022734	-	92	43.523	ENSSPAG00000016792	exosc1	82	43.523	Stegastes_partitus
ENSCING00000022734	-	89	56.684	ENSSSCG00000010518	EXOSC1	87	56.684	Sus_scrofa
ENSCING00000022734	-	90	52.381	ENSTGUG00000009692	EXOSC1	97	52.381	Taeniopygia_guttata
ENSCING00000022734	-	90	52.660	ENSTRUG00000007706	exosc1	97	52.660	Takifugu_rubripes
ENSCING00000022734	-	90	52.880	ENSTNIG00000014079	exosc1	96	52.880	Tetraodon_nigroviridis
ENSCING00000022734	-	89	53.476	ENSTBEG00000006011	EXOSC1	95	53.476	Tupaia_belangeri
ENSCING00000022734	-	88	55.738	ENSTTRG00000009887	EXOSC1	99	55.738	Tursiops_truncatus
ENSCING00000022734	-	89	47.340	ENSUAMG00000010266	EXOSC1	95	47.340	Ursus_americanus
ENSCING00000022734	-	89	47.059	ENSUMAG00000022002	EXOSC1	95	47.059	Ursus_maritimus
ENSCING00000022734	-	89	56.684	ENSVVUG00000023192	EXOSC1	60	56.684	Vulpes_vulpes
ENSCING00000022734	-	89	54.011	ENSXETG00000003434	exosc1	96	54.011	Xenopus_tropicalis
ENSCING00000022734	-	58	58.197	ENSXCOG00000014499	exosc1	94	58.197	Xiphophorus_couchianus
ENSCING00000022734	-	90	45.745	ENSXMAG00000023382	exosc1	91	45.745	Xiphophorus_maculatus