EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000023076 (Gene tree)
Gene ID: 100184410
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 2220 bases
Position: chr12:404952-407171
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000035044	RRM_1	PF00076.22	2e-78	1	5
ENSCINP00000035044	RRM_1	PF00076.22	2e-78	2	5
ENSCINP00000035044	RRM_1	PF00076.22	2e-78	3	5
ENSCINP00000035044	RRM_1	PF00076.22	2e-78	4	5
ENSCINP00000035044	RRM_1	PF00076.22	2e-78	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000030636	-	2220	-	ENSCINP00000035044	740 (aa)	-	H2XZG0

Gene Model

Click here to download ENSCING00000023076's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000023076's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000023076	-	97	49.464	ENSG00000122965	RBM19	65	68.421	Homo_sapiens
ENSCING00000023076	-	93	54.575	ENSAPOG00000010507	rbm19	76	54.902	Acanthochromis_polyacanthus
ENSCING00000023076	-	93	47.352	ENSAMEG00000008544	RBM19	75	48.287	Ailuropoda_melanoleuca
ENSCING00000023076	-	100	54.317	ENSACIG00000017780	rbm19	84	54.617	Amphilophus_citrinellus
ENSCING00000023076	-	98	54.019	ENSAOCG00000008554	rbm19	80	54.502	Amphiprion_ocellaris
ENSCING00000023076	-	99	53.333	ENSAPEG00000022381	rbm19	82	54.414	Amphiprion_percula
ENSCING00000023076	-	93	53.618	ENSATEG00000007000	rbm19	77	53.618	Anabas_testudineus
ENSCING00000023076	-	95	46.688	ENSAPLG00000015319	RBM19	78	47.240	Anas_platyrhynchos
ENSCING00000023076	-	100	52.126	ENSACAG00000005065	RBM19	74	52.598	Anolis_carolinensis
ENSCING00000023076	-	95	49.616	ENSANAG00000024136	RBM19	81	49.616	Aotus_nancymaae
ENSCING00000023076	-	96	49.758	ENSACLG00000001399	rbm19	83	47.522	Astatotilapia_calliptera
ENSCING00000023076	-	88	53.873	ENSAMXG00000017073	rbm19	78	53.873	Astyanax_mexicanus
ENSCING00000023076	-	93	49.083	ENSBTAG00000031824	RBM19	76	50.080	Bos_taurus
ENSCING00000023076	-	99	35.948	WBGene00004315	rbd-1	99	40.166	Caenorhabditis_elegans
ENSCING00000023076	-	94	49.383	ENSCJAG00000009798	RBM19	76	49.618	Callithrix_jacchus
ENSCING00000023076	-	97	49.074	ENSCAFG00000009146	RBM19	79	49.690	Canis_familiaris
ENSCING00000023076	-	97	49.228	ENSCAFG00020017862	RBM19	79	49.845	Canis_lupus_dingo
ENSCING00000023076	-	93	49.618	ENSCHIG00000014917	RBM19	82	50.718	Capra_hircus
ENSCING00000023076	-	86	46.914	ENSTSYG00000007207	RBM19	79	48.168	Carlito_syrichta
ENSCING00000023076	-	97	49.527	ENSCAPG00000006869	RBM19	81	50.315	Cavia_aperea
ENSCING00000023076	-	98	48.666	ENSCPOG00000026629	RBM19	82	49.608	Cavia_porcellus
ENSCING00000023076	-	96	49.466	ENSCCAG00000021665	-	81	49.618	Cebus_capucinus
ENSCING00000023076	-	78	43.233	ENSCCAG00000026637	-	77	43.609	Cebus_capucinus
ENSCING00000023076	-	92	49.617	ENSCATG00000035841	RBM19	81	49.770	Cercocebus_atys
ENSCING00000023076	-	100	48.567	ENSCLAG00000009965	RBM19	79	49.922	Chinchilla_lanigera
ENSCING00000023076	-	97	44.253	ENSCSAG00000002352	RBM19	79	44.397	Chlorocebus_sabaeus
ENSCING00000023076	-	99	49.852	ENSCPBG00000011990	RBM19	75	52.443	Chrysemys_picta_bellii
ENSCING00000023076	-	93	49.383	ENSCANG00000035927	RBM19	81	49.770	Colobus_angolensis_palliatus
ENSCING00000023076	-	92	50.235	ENSCGRG00001000323	Rbm19	80	50.706	Cricetulus_griseus_chok1gshd
ENSCING00000023076	-	92	50.235	ENSCGRG00000010371	Rbm19	80	50.706	Cricetulus_griseus_crigri
ENSCING00000023076	-	93	52.396	ENSCSEG00000017436	rbm19	80	53.226	Cynoglossus_semilaevis
ENSCING00000023076	-	99	53.821	ENSCVAG00000000300	rbm19	79	54.976	Cyprinodon_variegatus
ENSCING00000023076	-	94	51.181	ENSDARG00000042590	rbm19	76	52.077	Danio_rerio
ENSCING00000023076	-	94	49.309	ENSDNOG00000024534	RBM19	78	49.923	Dasypus_novemcinctus
ENSCING00000023076	-	93	50.786	ENSDORG00000008549	Rbm19	78	50.863	Dipodomys_ordii
ENSCING00000023076	-	94	43.079	FBgn0036018	CG3335	85	41.545	Drosophila_melanogaster
ENSCING00000023076	-	79	47.475	ENSEBUG00000008521	-	75	47.475	Eptatretus_burgeri
ENSCING00000023076	-	99	48.480	ENSEASG00005009452	RBM19	80	50.077	Equus_asinus_asinus
ENSCING00000023076	-	100	48.265	ENSECAG00000023716	RBM19	81	49.617	Equus_caballus
ENSCING00000023076	-	96	53.485	ENSELUG00000012561	rbm19	80	53.647	Esox_lucius
ENSCING00000023076	-	97	48.471	ENSFCAG00000002962	RBM19	76	49.922	Felis_catus
ENSCING00000023076	-	95	51.520	ENSFALG00000007768	RBM19	76	52.160	Ficedula_albicollis
ENSCING00000023076	-	99	47.401	ENSFDAG00000004629	RBM19	80	48.913	Fukomys_damarensis
ENSCING00000023076	-	94	54.412	ENSFHEG00000012578	rbm19	78	55.065	Fundulus_heteroclitus
ENSCING00000023076	-	93	52.202	ENSGMOG00000013120	rbm19	78	52.365	Gadus_morhua
ENSCING00000023076	-	99	48.463	ENSGALG00000008289	RBM19	74	52.160	Gallus_gallus
ENSCING00000023076	-	96	54.323	ENSGAFG00000012337	rbm19	80	54.870	Gambusia_affinis
ENSCING00000023076	-	100	51.403	ENSGACG00000009462	rbm19	83	52.214	Gasterosteus_aculeatus
ENSCING00000023076	-	72	53.846	ENSGAGG00000019457	RBM19	94	54.545	Gopherus_agassizii
ENSCING00000023076	-	97	49.464	ENSGGOG00000007371	RBM19	81	49.770	Gorilla_gorilla
ENSCING00000023076	-	96	52.665	ENSHBUG00000009047	rbm19	85	50.815	Haplochromis_burtoni
ENSCING00000023076	-	94	48.926	ENSHGLG00000010899	RBM19	81	49.922	Heterocephalus_glaber_female
ENSCING00000023076	-	94	48.187	ENSHGLG00100017936	RBM19	81	49.160	Heterocephalus_glaber_male
ENSCING00000023076	-	100	52.276	ENSHCOG00000016446	rbm19	78	53.268	Hippocampus_comes
ENSCING00000023076	-	98	51.603	ENSIPUG00000023849	rbm19	76	52.640	Ictalurus_punctatus
ENSCING00000023076	-	96	54.501	ENSKMAG00000014807	rbm19	82	55.212	Kryptolebias_marmoratus
ENSCING00000023076	-	97	52.153	ENSLBEG00000012897	rbm19	81	53.094	Labrus_bergylta
ENSCING00000023076	-	72	49.733	ENSLACG00000012030	RBM19	87	51.159	Latimeria_chalumnae
ENSCING00000023076	-	96	51.033	ENSLOCG00000008341	rbm19	78	51.923	Lepisosteus_oculatus
ENSCING00000023076	-	88	47.100	ENSLAFG00000004187	RBM19	82	46.749	Loxodonta_africana
ENSCING00000023076	-	94	49.600	ENSMFAG00000046091	RBM19	80	49.760	Macaca_fascicularis
ENSCING00000023076	-	97	49.617	ENSMMUG00000010496	RBM19	81	49.770	Macaca_mulatta
ENSCING00000023076	-	94	45.440	ENSMNEG00000028452	RBM19	83	47.140	Macaca_nemestrina
ENSCING00000023076	-	94	49.600	ENSMLEG00000034550	RBM19	78	49.920	Mandrillus_leucophaeus
ENSCING00000023076	-	97	54.267	ENSMAMG00000014397	rbm19	80	55.610	Mastacembelus_armatus
ENSCING00000023076	-	96	53.251	ENSMZEG00005016607	rbm19	86	51.391	Maylandia_zebra
ENSCING00000023076	-	94	42.453	ENSMGAG00000010087	RBM19	77	43.087	Meleagris_gallopavo
ENSCING00000023076	-	93	50.863	ENSMAUG00000019290	Rbm19	80	51.020	Mesocricetus_auratus
ENSCING00000023076	-	93	49.847	ENSMICG00000014423	RBM19	76	50.000	Microcebus_murinus
ENSCING00000023076	-	97	50.722	ENSMMOG00000017839	rbm19	80	51.852	Mola_mola
ENSCING00000023076	-	95	51.166	ENSMODG00000003597	RBM19	78	51.411	Monodelphis_domestica
ENSCING00000023076	-	97	54.590	ENSMALG00000012647	rbm19	80	55.574	Monopterus_albus
ENSCING00000023076	-	96	49.311	MGP_CAROLIEiJ_G0027656	Rbm19	80	50.549	Mus_caroli
ENSCING00000023076	-	96	49.160	ENSMUSG00000029594	Rbm19	80	50.391	Mus_musculus
ENSCING00000023076	-	93	49.765	MGP_PahariEiJ_G0024238	Rbm19	75	50.235	Mus_pahari
ENSCING00000023076	-	95	49.085	MGP_SPRETEiJ_G0028656	Rbm19	80	50.313	Mus_spretus
ENSCING00000023076	-	93	49.383	ENSMPUG00000002694	RBM19	74	49.383	Mustela_putorius_furo
ENSCING00000023076	-	100	47.536	ENSMLUG00000015075	RBM19	80	50.000	Myotis_lucifugus
ENSCING00000023076	-	93	50.470	ENSNGAG00000009076	Rbm19	80	51.411	Nannospalax_galili
ENSCING00000023076	-	99	54.693	ENSNBRG00000005913	rbm19	85	51.613	Neolamprologus_brichardi
ENSCING00000023076	-	93	49.923	ENSNLEG00000000190	RBM19	81	49.923	Nomascus_leucogenys
ENSCING00000023076	-	89	52.000	ENSMEUG00000004045	RBM19	79	42.523	Notamacropus_eugenii
ENSCING00000023076	-	93	49.544	ENSOPRG00000012064	RBM19	75	49.848	Ochotona_princeps
ENSCING00000023076	-	99	49.209	ENSODEG00000012977	RBM19	80	50.161	Octodon_degus
ENSCING00000023076	-	84	53.178	ENSONIG00000013576	rbm19	88	54.109	Oreochromis_niloticus
ENSCING00000023076	-	94	49.300	ENSOCUG00000009398	RBM19	76	49.456	Oryctolagus_cuniculus
ENSCING00000023076	-	94	53.710	ENSORLG00000008077	rbm19	77	54.677	Oryzias_latipes
ENSCING00000023076	-	96	52.582	ENSORLG00020013187	rbm19	79	52.960	Oryzias_latipes_hni
ENSCING00000023076	-	96	53.208	ENSORLG00015001774	rbm19	77	53.271	Oryzias_latipes_hsok
ENSCING00000023076	-	94	53.481	ENSOMEG00000003334	rbm19	77	53.481	Oryzias_melastigma
ENSCING00000023076	-	83	48.148	ENSOGAG00000000602	RBM19	77	48.148	Otolemur_garnettii
ENSCING00000023076	-	93	50.000	ENSOARG00000006827	RBM19	76	50.796	Ovis_aries
ENSCING00000023076	-	97	48.318	ENSPPAG00000043712	RBM19	81	50.000	Pan_paniscus
ENSCING00000023076	-	98	48.318	ENSPPRG00000023027	RBM19	78	49.383	Panthera_pardus
ENSCING00000023076	-	98	44.954	ENSPTIG00000011096	RBM19	81	46.142	Panthera_tigris_altaica
ENSCING00000023076	-	97	48.318	ENSPTRG00000005494	RBM19	81	50.000	Pan_troglodytes
ENSCING00000023076	-	97	49.464	ENSPANG00000004795	RBM19	78	49.617	Papio_anubis
ENSCING00000023076	-	93	50.977	ENSPKIG00000017095	rbm19	79	50.974	Paramormyrops_kingsleyae
ENSCING00000023076	-	97	51.456	ENSPSIG00000008191	RBM19	73	50.685	Pelodiscus_sinensis
ENSCING00000023076	-	100	46.735	ENSPMGG00000019087	rbm19	99	46.903	Periophthalmus_magnuspinnatus
ENSCING00000023076	-	100	49.313	ENSPEMG00000018058	Rbm19	80	51.406	Peromyscus_maniculatus_bairdii
ENSCING00000023076	-	94	51.174	ENSPCIG00000028861	RBM19	76	51.719	Phascolarctos_cinereus
ENSCING00000023076	-	92	53.659	ENSPFOG00000015300	rbm19	75	54.959	Poecilia_formosa
ENSCING00000023076	-	99	52.632	ENSPLAG00000000059	rbm19	76	54.723	Poecilia_latipinna
ENSCING00000023076	-	97	53.422	ENSPMEG00000018585	rbm19	83	54.758	Poecilia_mexicana
ENSCING00000023076	-	96	54.397	ENSPREG00000000978	rbm19	79	55.537	Poecilia_reticulata
ENSCING00000023076	-	93	49.383	ENSPPYG00000004993	RBM19	75	49.383	Pongo_abelii
ENSCING00000023076	-	92	49.531	ENSPCOG00000016190	RBM19	80	50.156	Propithecus_coquereli
ENSCING00000023076	-	99	47.112	ENSPVAG00000011618	RBM19	81	47.619	Pteropus_vampyrus
ENSCING00000023076	-	96	53.858	ENSPNYG00000017434	rbm19	81	52.861	Pundamilia_nyererei
ENSCING00000023076	-	96	50.962	ENSPNAG00000012069	rbm19	78	52.146	Pygocentrus_nattereri
ENSCING00000023076	-	95	48.858	ENSRNOG00000001397	Rbm19	80	49.766	Rattus_norvegicus
ENSCING00000023076	-	93	49.770	ENSRBIG00000041419	RBM19	75	49.383	Rhinopithecus_bieti
ENSCING00000023076	-	93	49.770	ENSRROG00000031938	RBM19	76	49.770	Rhinopithecus_roxellana
ENSCING00000023076	-	98	34.297	YPR112C	-	73	34.594	Saccharomyces_cerevisiae
ENSCING00000023076	-	93	49.383	ENSSBOG00000021434	-	75	49.383	Saimiri_boliviensis_boliviensis
ENSCING00000023076	-	83	45.977	ENSSBOG00000022679	-	74	45.977	Saimiri_boliviensis_boliviensis
ENSCING00000023076	-	100	51.981	ENSSHAG00000012256	RBM19	80	52.532	Sarcophilus_harrisii
ENSCING00000023076	-	100	49.474	ENSSFOG00015005124	rbm19	77	51.685	Scleropages_formosus
ENSCING00000023076	-	100	52.395	ENSSMAG00000011828	rbm19	81	54.245	Scophthalmus_maximus
ENSCING00000023076	-	99	52.239	ENSSDUG00000013544	rbm19	86	52.537	Seriola_dumerili
ENSCING00000023076	-	93	53.035	ENSSLDG00000025413	rbm19	85	53.920	Seriola_lalandi_dorsalis
ENSCING00000023076	-	74	53.065	ENSSPUG00000011064	RBM19	97	53.217	Sphenodon_punctatus
ENSCING00000023076	-	97	52.077	ENSSPAG00000018685	rbm19	82	53.871	Stegastes_partitus
ENSCING00000023076	-	93	49.233	ENSSSCG00000009868	RBM19	83	48.148	Sus_scrofa
ENSCING00000023076	-	96	50.548	ENSTGUG00000009017	RBM19	78	50.861	Taeniopygia_guttata
ENSCING00000023076	-	94	52.026	ENSTRUG00000016032	rbm19	81	48.338	Takifugu_rubripes
ENSCING00000023076	-	70	52.258	ENSTNIG00000015903	rbm19	94	52.903	Tetraodon_nigroviridis
ENSCING00000023076	-	72	51.439	ENSTTRG00000003987	RBM19	60	52.518	Tursiops_truncatus
ENSCING00000023076	-	92	48.233	ENSUAMG00000002076	RBM19	74	49.302	Ursus_americanus
ENSCING00000023076	-	94	48.387	ENSUMAG00000010816	RBM19	75	49.457	Ursus_maritimus
ENSCING00000023076	-	97	49.383	ENSVVUG00000007886	RBM19	79	50.000	Vulpes_vulpes
ENSCING00000023076	-	96	49.353	ENSXETG00000017668	rbm19	79	50.727	Xenopus_tropicalis
ENSCING00000023076	-	96	53.647	ENSXCOG00000016995	rbm19	78	54.619	Xiphophorus_couchianus
ENSCING00000023076	-	96	54.194	ENSXMAG00000007641	rbm19	78	54.516	Xiphophorus_maculatus