EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000023459 (Gene tree)
Gene ID: 100170057
Gene Symbol: -
Alias: -
Full Name: zinc finger (CCHC)-24
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 2138 bases
Position: chr2:418131-420268
Accession: 100170057
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000035904	zf-CCHC	PF00098.23	1e-07	1	1
ENSCINP00000035904	RRM_1	PF00076.22	2.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000035055	-	855	XM_002121770	ENSCINP00000035904	230 (aa)	XP_002121806	A0A1W2WQT6

Gene Model

Click here to download ENSCING00000023459's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000023459's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000023459	-	54	57.258	ENSG00000115875	SRSF7	86	56.250	Homo_sapiens
ENSCING00000023459	-	63	41.379	ENSACIG00000016419	-	88	40.426	Amphilophus_citrinellus
ENSCING00000023459	-	55	55.556	ENSACIG00000004885	srsf7a	72	55.556	Amphilophus_citrinellus
ENSCING00000023459	-	54	57.258	ENSACIG00000009890	srsf7b	88	56.250	Amphilophus_citrinellus
ENSCING00000023459	-	56	41.085	ENSAOCG00000021499	srsf7b	81	40.945	Amphiprion_ocellaris
ENSCING00000023459	-	56	41.085	ENSAPEG00000018802	srsf7b	81	40.945	Amphiprion_percula
ENSCING00000023459	-	54	57.258	ENSAPLG00000012167	-	52	56.250	Anas_platyrhynchos
ENSCING00000023459	-	54	57.258	ENSANAG00000019399	SRSF7	83	56.250	Aotus_nancymaae
ENSCING00000023459	-	55	56.349	ENSAMXG00000007005	srsf7b	55	55.385	Astyanax_mexicanus
ENSCING00000023459	-	54	57.258	ENSBTAG00000014891	SRSF7	83	56.250	Bos_taurus
ENSCING00000023459	-	54	57.258	ENSCJAG00000015185	SRSF7	83	56.250	Callithrix_jacchus
ENSCING00000023459	-	59	44.444	ENSCAFG00020013547	-	73	44.275	Canis_lupus_dingo
ENSCING00000023459	-	54	57.258	ENSCAFG00020022807	SRSF7	83	56.250	Canis_lupus_dingo
ENSCING00000023459	-	54	57.258	ENSCHIG00000019180	SRSF7	83	56.250	Capra_hircus
ENSCING00000023459	-	54	57.258	ENSTSYG00000012273	SRSF7	83	56.250	Carlito_syrichta
ENSCING00000023459	-	54	57.258	ENSCPOG00000033318	SRSF7	83	56.250	Cavia_porcellus
ENSCING00000023459	-	54	57.258	ENSCATG00000031728	SRSF7	83	56.250	Cercocebus_atys
ENSCING00000023459	-	54	57.258	ENSCLAG00000005235	SRSF7	83	56.250	Chinchilla_lanigera
ENSCING00000023459	-	54	57.258	ENSCPBG00000018247	-	83	56.250	Chrysemys_picta_bellii
ENSCING00000023459	-	54	57.258	ENSCPBG00000018252	-	83	56.250	Chrysemys_picta_bellii
ENSCING00000023459	-	54	53.906	ENSCSAVG00000007369	-	66	53.125	Ciona_savignyi
ENSCING00000023459	-	57	83.333	ENSCSAVG00000010868	-	95	64.602	Ciona_savignyi
ENSCING00000023459	-	54	57.258	ENSCANG00000040757	SRSF7	83	56.250	Colobus_angolensis_palliatus
ENSCING00000023459	-	54	57.258	ENSCGRG00000005929	Srsf7	84	56.250	Cricetulus_griseus_crigri
ENSCING00000023459	-	57	54.545	ENSCSEG00000006378	srsf7a	79	56.349	Cynoglossus_semilaevis
ENSCING00000023459	-	55	50.394	ENSCVAG00000006768	srsf7b	85	36.364	Cyprinodon_variegatus
ENSCING00000023459	-	54	56.452	ENSDARG00000035325	srsf7a	84	60.656	Danio_rerio
ENSCING00000023459	-	54	55.645	ENSDARG00000101057	srsf7b	75	54.688	Danio_rerio
ENSCING00000023459	-	54	57.258	ENSDNOG00000007821	SRSF7	83	56.250	Dasypus_novemcinctus
ENSCING00000023459	-	54	57.258	ENSEASG00005005547	SRSF7	83	56.250	Equus_asinus_asinus
ENSCING00000023459	-	58	54.887	ENSELUG00000016922	srsf7a	76	57.025	Esox_lucius
ENSCING00000023459	-	55	52.756	ENSELUG00000018155	srsf7b	83	52.344	Esox_lucius
ENSCING00000023459	-	54	38.400	ENSFCAG00000028644	-	73	38.400	Felis_catus
ENSCING00000023459	-	54	57.258	ENSFCAG00000031143	SRSF7	62	51.678	Felis_catus
ENSCING00000023459	-	54	54.032	ENSFDAG00000017258	-	50	53.125	Fukomys_damarensis
ENSCING00000023459	-	54	57.258	ENSFDAG00000016030	-	83	56.250	Fukomys_damarensis
ENSCING00000023459	-	64	50.968	ENSFHEG00000007159	srsf7a	62	55.385	Fundulus_heteroclitus
ENSCING00000023459	-	55	50.394	ENSFHEG00000023046	srsf7b	50	51.181	Fundulus_heteroclitus
ENSCING00000023459	-	54	57.258	ENSGALG00000033120	SRSF7	84	56.250	Gallus_gallus
ENSCING00000023459	-	57	50.758	ENSGAFG00000008856	srsf7b	83	50.769	Gambusia_affinis
ENSCING00000023459	-	54	57.258	ENSGAGG00000003553	SRSF7	83	56.250	Gopherus_agassizii
ENSCING00000023459	-	53	57.724	ENSGAGG00000016294	-	82	56.693	Gopherus_agassizii
ENSCING00000023459	-	54	57.258	ENSGGOG00000014620	SRSF7	83	56.250	Gorilla_gorilla
ENSCING00000023459	-	54	42.636	ENSHGLG00000005295	-	83	42.857	Heterocephalus_glaber_female
ENSCING00000023459	-	54	57.258	ENSHGLG00100006124	-	83	56.250	Heterocephalus_glaber_male
ENSCING00000023459	-	54	42.636	ENSHGLG00100014570	-	83	42.857	Heterocephalus_glaber_male
ENSCING00000023459	-	54	56.452	ENSIPUG00000011708	srsf7	85	48.598	Ictalurus_punctatus
ENSCING00000023459	-	54	57.258	ENSSTOG00000004389	SRSF7	83	56.250	Ictidomys_tridecemlineatus
ENSCING00000023459	-	57	42.537	ENSJJAG00000020230	-	71	42.748	Jaculus_jaculus
ENSCING00000023459	-	54	57.258	ENSLACG00000018688	srsf7a	55	56.250	Latimeria_chalumnae
ENSCING00000023459	-	54	56.452	ENSLACG00000004052	SRSF7	86	46.606	Latimeria_chalumnae
ENSCING00000023459	-	76	49.425	ENSLOCG00000014314	-	82	46.061	Lepisosteus_oculatus
ENSCING00000023459	-	54	57.258	ENSLAFG00000005666	SRSF7	71	56.250	Loxodonta_africana
ENSCING00000023459	-	54	57.258	ENSMFAG00000001980	SRSF7	83	56.250	Macaca_fascicularis
ENSCING00000023459	-	54	57.258	ENSMMUG00000011025	SRSF7	52	56.250	Macaca_mulatta
ENSCING00000023459	-	54	57.258	ENSMNEG00000036669	SRSF7	50	56.250	Macaca_nemestrina
ENSCING00000023459	-	54	57.258	ENSMLEG00000038852	SRSF7	83	56.250	Mandrillus_leucophaeus
ENSCING00000023459	-	54	57.258	ENSMAMG00000017138	srsf7b	50	56.250	Mastacembelus_armatus
ENSCING00000023459	-	54	57.258	ENSMGAG00000007415	SRSF7	53	56.250	Meleagris_gallopavo
ENSCING00000023459	-	53	48.760	ENSMAUG00000021932	-	57	46.875	Mesocricetus_auratus
ENSCING00000023459	-	54	57.258	ENSMICG00000005046	SRSF7	51	56.250	Microcebus_murinus
ENSCING00000023459	-	55	55.556	ENSMMOG00000005208	srsf7a	73	55.556	Mola_mola
ENSCING00000023459	-	54	57.258	ENSMODG00000008669	-	81	47.032	Monodelphis_domestica
ENSCING00000023459	-	54	57.258	ENSMUSG00000024097	Srsf7	83	56.250	Mus_musculus
ENSCING00000023459	-	54	54.032	ENSMLUG00000015692	-	51	53.125	Myotis_lucifugus
ENSCING00000023459	-	55	55.556	ENSNBRG00000006601	srsf7a	72	55.556	Neolamprologus_brichardi
ENSCING00000023459	-	54	57.258	ENSNLEG00000016349	SRSF7	83	56.250	Nomascus_leucogenys
ENSCING00000023459	-	53	56.098	ENSMEUG00000000773	-	59	55.118	Notamacropus_eugenii
ENSCING00000023459	-	54	57.258	ENSOPRG00000010234	SRSF7	57	52.055	Ochotona_princeps
ENSCING00000023459	-	51	41.525	ENSODEG00000008570	-	55	42.149	Octodon_degus
ENSCING00000023459	-	54	57.258	ENSPPAG00000017907	SRSF7	50	56.250	Pan_paniscus
ENSCING00000023459	-	54	57.258	ENSPPRG00000003682	SRSF7	62	51.678	Panthera_pardus
ENSCING00000023459	-	54	57.258	ENSPTIG00000006350	SRSF7	62	51.678	Panthera_tigris_altaica
ENSCING00000023459	-	54	57.258	ENSPTRG00000011851	SRSF7	56	56.250	Pan_troglodytes
ENSCING00000023459	-	54	57.258	ENSPANG00000018079	SRSF7	50	56.250	Papio_anubis
ENSCING00000023459	-	54	55.645	ENSPKIG00000022669	SRSF7	77	54.688	Paramormyrops_kingsleyae
ENSCING00000023459	-	54	58.065	ENSPKIG00000017425	srsf7b	65	57.031	Paramormyrops_kingsleyae
ENSCING00000023459	-	54	57.258	ENSPSIG00000004636	-	50	56.250	Pelodiscus_sinensis
ENSCING00000023459	-	55	54.762	ENSPMGG00000021890	srsf7a	80	54.762	Periophthalmus_magnuspinnatus
ENSCING00000023459	-	72	37.952	ENSPMGG00000010209	-	52	57.500	Periophthalmus_magnuspinnatus
ENSCING00000023459	-	60	52.174	ENSPMAG00000004472	srsf7a	55	51.639	Petromyzon_marinus
ENSCING00000023459	-	54	57.258	ENSPCIG00000020694	-	83	56.250	Phascolarctos_cinereus
ENSCING00000023459	-	54	55.645	ENSPCIG00000020726	-	84	54.688	Phascolarctos_cinereus
ENSCING00000023459	-	56	50.781	ENSPREG00000006149	srsf7b	52	51.181	Poecilia_reticulata
ENSCING00000023459	-	57	55.303	ENSPREG00000020685	srsf7a	90	55.385	Poecilia_reticulata
ENSCING00000023459	-	55	50.394	ENSPCOG00000023721	-	71	50.000	Propithecus_coquereli
ENSCING00000023459	-	54	56.452	ENSPCOG00000019422	-	53	55.469	Propithecus_coquereli
ENSCING00000023459	-	54	57.258	ENSPVAG00000012076	SRSF7	59	51.678	Pteropus_vampyrus
ENSCING00000023459	-	73	41.420	ENSPNAG00000012262	srsf3a	63	60.000	Pygocentrus_nattereri
ENSCING00000023459	-	74	41.176	ENSRNOG00000008398	AABR07055789.1	69	47.328	Rattus_norvegicus
ENSCING00000023459	-	54	57.258	ENSRBIG00000024695	SRSF7	52	56.693	Rhinopithecus_bieti
ENSCING00000023459	-	54	57.258	ENSRROG00000005080	SRSF7	83	56.250	Rhinopithecus_roxellana
ENSCING00000023459	-	54	57.258	ENSSBOG00000025074	SRSF7	83	56.250	Saimiri_boliviensis_boliviensis
ENSCING00000023459	-	54	55.645	ENSSHAG00000004597	-	57	50.336	Sarcophilus_harrisii
ENSCING00000023459	-	54	57.258	ENSSHAG00000015970	-	82	56.250	Sarcophilus_harrisii
ENSCING00000023459	-	54	55.645	ENSSFOG00015007348	SRSF7	86	48.858	Scleropages_formosus
ENSCING00000023459	-	57	56.489	ENSSDUG00000021338	srsf7b	80	55.469	Seriola_dumerili
ENSCING00000023459	-	55	55.906	ENSSLDG00000021463	srsf7b	64	55.906	Seriola_lalandi_dorsalis
ENSCING00000023459	-	55	55.118	ENSSPAG00000017204	srsf7b	81	54.688	Stegastes_partitus
ENSCING00000023459	-	57	53.788	ENSSPAG00000022192	srsf7a	88	55.556	Stegastes_partitus
ENSCING00000023459	-	54	57.258	ENSSSCG00000008484	SRSF7	83	56.250	Sus_scrofa
ENSCING00000023459	-	63	38.621	ENSTNIG00000014643	srsf3b	71	39.310	Tetraodon_nigroviridis
ENSCING00000023459	-	53	57.724	ENSTBEG00000004604	SRSF7	50	56.693	Tupaia_belangeri
ENSCING00000023459	-	53	55.285	ENSTTRG00000014324	SRSF7	61	48.649	Tursiops_truncatus
ENSCING00000023459	-	54	57.258	ENSUAMG00000025051	-	83	56.250	Ursus_americanus
ENSCING00000023459	-	53	47.107	ENSUMAG00000023107	-	60	63.793	Ursus_maritimus
ENSCING00000023459	-	53	57.724	ENSVPAG00000003316	SRSF7	50	56.693	Vicugna_pacos
ENSCING00000023459	-	54	57.258	ENSVVUG00000018767	-	83	56.250	Vulpes_vulpes
ENSCING00000023459	-	74	41.520	ENSVVUG00000006092	-	70	45.882	Vulpes_vulpes
ENSCING00000023459	-	57	50.769	ENSXCOG00000010843	srsf7b	78	50.781	Xiphophorus_couchianus
ENSCING00000023459	-	57	54.545	ENSXCOG00000009381	srsf7a	90	54.615	Xiphophorus_couchianus