EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000023482 (Gene tree)
Gene ID: 100182514
Gene Symbol: -
Alias: -
Full Name: replication protein A 70 kDa DNA-binding subunit-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 1824 bases
Position: chr14:1890202-1892025
Accession: 100182514
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000034174	tRNA_anti-codon	PF01336.25	1.9e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000037267	-	1824	-	ENSCINP00000034174	607 (aa)	XP_002127939	H2XWZ0

Gene Model

Click here to download ENSCING00000023482's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03030	DNA replication	KEGG
cin03420	Nucleotide excision repair	KEGG
cin03430	Mismatch repair	KEGG
cin03440	Homologous recombination	KEGG
cin03460	Fanconi anemia pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000023482's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000023482	-	99	43.421	ENSAPOG00000011658	rpa1	99	43.357	Acanthochromis_polyacanthus
ENSCING00000023482	-	95	46.996	ENSAPOG00000019409	RPA1	83	46.996	Acanthochromis_polyacanthus
ENSCING00000023482	-	97	41.128	ENSAMEG00000007706	RPA1	97	41.265	Ailuropoda_melanoleuca
ENSCING00000023482	-	95	40.893	ENSACIG00000007277	rpa1	99	40.893	Amphilophus_citrinellus
ENSCING00000023482	-	94	43.568	ENSACIG00000012881	RPA1	98	43.568	Amphilophus_citrinellus
ENSCING00000023482	-	99	42.573	ENSAOCG00000009003	RPA1	99	42.573	Amphiprion_ocellaris
ENSCING00000023482	-	99	43.657	ENSAOCG00000023376	rpa1	99	43.706	Amphiprion_ocellaris
ENSCING00000023482	-	99	43.328	ENSAPEG00000008634	rpa1	99	43.333	Amphiprion_percula
ENSCING00000023482	-	99	41.467	ENSAPEG00000019132	RPA1	99	41.467	Amphiprion_percula
ENSCING00000023482	-	94	44.503	ENSATEG00000022024	rpa1	99	44.503	Anabas_testudineus
ENSCING00000023482	-	99	41.604	ENSATEG00000006443	RPA1	99	41.604	Anabas_testudineus
ENSCING00000023482	-	97	37.977	ENSAPLG00000012442	RPA1	99	38.201	Anas_platyrhynchos
ENSCING00000023482	-	99	39.604	ENSACAG00000014490	RPA1	99	40.196	Anolis_carolinensis
ENSCING00000023482	-	96	42.857	ENSANAG00000023456	RPA1	98	42.857	Aotus_nancymaae
ENSCING00000023482	-	93	44.444	ENSACLG00000006640	rpa1	99	44.444	Astatotilapia_calliptera
ENSCING00000023482	-	99	41.589	ENSACLG00000005223	RPA1	99	41.589	Astatotilapia_calliptera
ENSCING00000023482	-	99	42.928	ENSAMXG00000008418	rpa1	99	43.160	Astyanax_mexicanus
ENSCING00000023482	-	98	41.571	ENSBTAG00000009711	RPA1	99	41.571	Bos_taurus
ENSCING00000023482	-	98	41.914	ENSCJAG00000001848	RPA1	99	41.883	Callithrix_jacchus
ENSCING00000023482	-	98	40.686	ENSCAFG00000019249	RPA1	99	40.879	Canis_familiaris
ENSCING00000023482	-	98	40.686	ENSCAFG00020009847	RPA1	99	40.879	Canis_lupus_dingo
ENSCING00000023482	-	98	41.396	ENSCHIG00000026308	RPA1	99	41.408	Capra_hircus
ENSCING00000023482	-	98	41.005	ENSTSYG00000003482	-	99	41.005	Carlito_syrichta
ENSCING00000023482	-	98	42.717	ENSCPOG00000000035	RPA1	99	42.717	Cavia_porcellus
ENSCING00000023482	-	98	34.534	ENSCCAG00000010981	RPA1	99	34.578	Cebus_capucinus
ENSCING00000023482	-	98	42.062	ENSCLAG00000005185	-	99	42.062	Chinchilla_lanigera
ENSCING00000023482	-	98	39.508	ENSCLAG00000015045	-	99	39.508	Chinchilla_lanigera
ENSCING00000023482	-	98	34.697	ENSCSAG00000013833	RPA1	99	34.697	Chlorocebus_sabaeus
ENSCING00000023482	-	93	42.440	ENSCHOG00000013540	-	97	42.440	Choloepus_hoffmanni
ENSCING00000023482	-	72	47.153	ENSCHOG00000009454	-	99	47.153	Choloepus_hoffmanni
ENSCING00000023482	-	99	42.532	ENSCPBG00000020377	RPA1	99	43.608	Chrysemys_picta_bellii
ENSCING00000023482	-	97	43.098	ENSCANG00000030911	RPA1	99	43.098	Colobus_angolensis_palliatus
ENSCING00000023482	-	99	41.479	ENSCGRG00001008197	Rpa1	99	41.479	Cricetulus_griseus_chok1gshd
ENSCING00000023482	-	76	46.237	ENSCGRG00000000582	Rpa1	90	46.237	Cricetulus_griseus_crigri
ENSCING00000023482	-	99	42.409	ENSCSEG00000013066	rpa1	99	42.409	Cynoglossus_semilaevis
ENSCING00000023482	-	99	42.105	ENSCSEG00000012726	RPA1	98	42.222	Cynoglossus_semilaevis
ENSCING00000023482	-	99	42.857	ENSCVAG00000019431	rpa1	99	43.257	Cyprinodon_variegatus
ENSCING00000023482	-	95	48.780	ENSCVAG00000013446	-	87	48.780	Cyprinodon_variegatus
ENSCING00000023482	-	99	43.067	ENSDARG00000003938	rpa1	99	43.067	Danio_rerio
ENSCING00000023482	-	98	41.680	ENSDNOG00000017218	RPA1	98	41.680	Dasypus_novemcinctus
ENSCING00000023482	-	98	41.899	ENSDORG00000006199	Rpa1	99	42.062	Dipodomys_ordii
ENSCING00000023482	-	99	38.259	FBgn0010173	RpA-70	99	39.245	Drosophila_melanogaster
ENSCING00000023482	-	81	40.831	ENSETEG00000017608	RPA1	81	40.786	Echinops_telfairi
ENSCING00000023482	-	97	42.244	ENSEASG00005009372	RPA1	99	42.399	Equus_asinus_asinus
ENSCING00000023482	-	98	41.883	ENSECAG00000023886	RPA1	99	42.045	Equus_caballus
ENSCING00000023482	-	69	44.737	ENSEEUG00000002186	-	68	44.737	Erinaceus_europaeus
ENSCING00000023482	-	99	42.810	ENSELUG00000021071	rpa1	99	42.810	Esox_lucius
ENSCING00000023482	-	69	46.539	ENSELUG00000006136	RPA1	95	41.440	Esox_lucius
ENSCING00000023482	-	98	41.491	ENSFCAG00000006306	RPA1	99	41.491	Felis_catus
ENSCING00000023482	-	98	41.708	ENSFALG00000006575	RPA1	99	41.708	Ficedula_albicollis
ENSCING00000023482	-	98	42.717	ENSFDAG00000007720	RPA1	99	42.717	Fukomys_damarensis
ENSCING00000023482	-	99	43.234	ENSFHEG00000003580	rpa1	99	43.234	Fundulus_heteroclitus
ENSCING00000023482	-	99	41.791	ENSGMOG00000010382	rpa1	99	41.791	Gadus_morhua
ENSCING00000023482	-	99	41.408	ENSGALG00000003072	RPA1	99	41.408	Gallus_gallus
ENSCING00000023482	-	98	42.739	ENSGAFG00000012916	rpa1	99	42.739	Gambusia_affinis
ENSCING00000023482	-	99	39.297	ENSGAFG00000020953	RPA1	99	39.297	Gambusia_affinis
ENSCING00000023482	-	99	43.449	ENSGACG00000010856	rpa1	99	43.449	Gasterosteus_aculeatus
ENSCING00000023482	-	99	42.020	ENSGAGG00000013611	RPA1	99	42.020	Gopherus_agassizii
ENSCING00000023482	-	98	42.715	ENSGGOG00000014186	RPA1	99	42.715	Gorilla_gorilla
ENSCING00000023482	-	99	44.279	ENSHBUG00000017773	rpa1	99	44.279	Haplochromis_burtoni
ENSCING00000023482	-	93	38.593	ENSHBUG00000009348	RPA1	96	38.593	Haplochromis_burtoni
ENSCING00000023482	-	98	41.899	ENSHGLG00000008846	RPA1	99	42.226	Heterocephalus_glaber_female
ENSCING00000023482	-	98	39.935	ENSHGLG00100000799	-	99	39.935	Heterocephalus_glaber_male
ENSCING00000023482	-	98	41.899	ENSHGLG00100017755	-	99	42.226	Heterocephalus_glaber_male
ENSCING00000023482	-	92	38.860	ENSHGLG00100002005	-	95	39.267	Heterocephalus_glaber_male
ENSCING00000023482	-	99	34.375	ENSHCOG00000000351	RPA1	98	34.323	Hippocampus_comes
ENSCING00000023482	-	99	41.100	ENSHCOG00000001401	rpa1	99	41.667	Hippocampus_comes
ENSCING00000023482	-	99	43.842	ENSIPUG00000004400	rpa1	99	43.842	Ictalurus_punctatus
ENSCING00000023482	-	95	41.107	ENSSTOG00000022475	RPA1	99	41.107	Ictidomys_tridecemlineatus
ENSCING00000023482	-	93	43.151	ENSJJAG00000000876	Rpa1	95	43.151	Jaculus_jaculus
ENSCING00000023482	-	99	40.753	ENSKMAG00000005605	rpa1	99	41.734	Kryptolebias_marmoratus
ENSCING00000023482	-	99	43.186	ENSKMAG00000000234	RPA1	99	43.186	Kryptolebias_marmoratus
ENSCING00000023482	-	98	42.140	ENSLBEG00000021604	rpa1	99	41.983	Labrus_bergylta
ENSCING00000023482	-	99	46.545	ENSLBEG00000002281	RPA1	86	46.545	Labrus_bergylta
ENSCING00000023482	-	77	43.568	ENSLACG00000007210	RPA1	95	43.568	Latimeria_chalumnae
ENSCING00000023482	-	99	44.007	ENSLOCG00000006397	rpa1	99	44.007	Lepisosteus_oculatus
ENSCING00000023482	-	99	41.308	ENSLAFG00000015354	RPA1	99	41.308	Loxodonta_africana
ENSCING00000023482	-	81	43.222	ENSMFAG00000036138	-	99	43.222	Macaca_fascicularis
ENSCING00000023482	-	98	42.787	ENSMMUG00000011604	-	99	42.881	Macaca_mulatta
ENSCING00000023482	-	98	41.021	ENSMMUG00000002442	-	99	41.021	Macaca_mulatta
ENSCING00000023482	-	81	42.656	ENSMNEG00000029837	-	90	42.656	Macaca_nemestrina
ENSCING00000023482	-	93	43.328	ENSMNEG00000031632	-	95	43.328	Macaca_nemestrina
ENSCING00000023482	-	97	39.803	ENSMLEG00000038768	-	99	39.607	Mandrillus_leucophaeus
ENSCING00000023482	-	91	46.991	ENSMAMG00000020097	RPA1	87	45.806	Mastacembelus_armatus
ENSCING00000023482	-	99	42.810	ENSMAMG00000017993	rpa1	99	42.810	Mastacembelus_armatus
ENSCING00000023482	-	99	41.589	ENSMZEG00005024731	RPA1	99	41.589	Maylandia_zebra
ENSCING00000023482	-	99	44.776	ENSMZEG00005007551	rpa1	99	44.776	Maylandia_zebra
ENSCING00000023482	-	98	41.157	ENSMGAG00000005315	RPA1	98	41.157	Meleagris_gallopavo
ENSCING00000023482	-	97	41.899	ENSMAUG00000010474	Rpa1	99	41.776	Mesocricetus_auratus
ENSCING00000023482	-	98	40.843	ENSMICG00000012867	RPA1	99	41.167	Microcebus_murinus
ENSCING00000023482	-	98	41.452	ENSMOCG00000013019	Rpa1	99	41.452	Microtus_ochrogaster
ENSCING00000023482	-	98	44.518	ENSMMOG00000010868	RPA1	98	44.518	Mola_mola
ENSCING00000023482	-	96	43.515	ENSMMOG00000014292	rpa1	99	43.515	Mola_mola
ENSCING00000023482	-	98	42.351	ENSMODG00000010549	RPA1	98	42.351	Monodelphis_domestica
ENSCING00000023482	-	97	46.537	ENSMALG00000001208	RPA1	82	46.537	Monopterus_albus
ENSCING00000023482	-	98	43.760	ENSMALG00000011453	rpa1	99	43.760	Monopterus_albus
ENSCING00000023482	-	99	41.452	MGP_CAROLIEiJ_G0016734	Rpa1	99	41.452	Mus_caroli
ENSCING00000023482	-	99	40.735	ENSMUSG00000000751	Rpa1	99	41.148	Mus_musculus
ENSCING00000023482	-	99	41.987	MGP_PahariEiJ_G0017871	Rpa1	99	41.987	Mus_pahari
ENSCING00000023482	-	99	40.829	MGP_SPRETEiJ_G0017577	Rpa1	99	41.242	Mus_spretus
ENSCING00000023482	-	98	40.747	ENSMPUG00000013119	RPA1	99	40.747	Mustela_putorius_furo
ENSCING00000023482	-	98	39.936	ENSMLUG00000006113	RPA1	99	39.936	Myotis_lucifugus
ENSCING00000023482	-	93	41.724	ENSNGAG00000004522	Rpa1	91	41.724	Nannospalax_galili
ENSCING00000023482	-	94	44.056	ENSNBRG00000020595	rpa1	99	44.056	Neolamprologus_brichardi
ENSCING00000023482	-	98	42.000	ENSNBRG00000009672	RPA1	97	42.000	Neolamprologus_brichardi
ENSCING00000023482	-	98	41.951	ENSNLEG00000017149	RPA1	99	42.062	Nomascus_leucogenys
ENSCING00000023482	-	97	37.667	ENSMEUG00000006714	RPA1	99	37.667	Notamacropus_eugenii
ENSCING00000023482	-	93	42.470	ENSODEG00000009038	RPA1	94	42.470	Octodon_degus
ENSCING00000023482	-	99	44.118	ENSONIG00000013135	rpa1	99	44.118	Oreochromis_niloticus
ENSCING00000023482	-	97	42.131	ENSOANG00000010880	RPA1	99	42.390	Ornithorhynchus_anatinus
ENSCING00000023482	-	98	40.094	ENSOCUG00000001504	RPA1	99	40.094	Oryctolagus_cuniculus
ENSCING00000023482	-	99	43.021	ENSORLG00000004856	rpa1	99	43.021	Oryzias_latipes
ENSCING00000023482	-	99	39.482	ENSORLG00000003368	RPA1	99	39.482	Oryzias_latipes
ENSCING00000023482	-	99	48.380	ENSORLG00020015284	RPA1	90	48.380	Oryzias_latipes_hni
ENSCING00000023482	-	99	43.186	ENSORLG00020008980	rpa1	99	43.186	Oryzias_latipes_hni
ENSCING00000023482	-	71	46.882	ENSORLG00015005867	-	98	46.882	Oryzias_latipes_hsok
ENSCING00000023482	-	99	43.186	ENSORLG00015013982	rpa1	99	43.186	Oryzias_latipes_hsok
ENSCING00000023482	-	99	40.217	ENSORLG00015020383	RPA1	99	40.217	Oryzias_latipes_hsok
ENSCING00000023482	-	99	43.636	ENSOMEG00000004704	rpa1	99	43.636	Oryzias_melastigma
ENSCING00000023482	-	93	43.409	ENSOMEG00000011040	RPA1	99	43.409	Oryzias_melastigma
ENSCING00000023482	-	89	40.074	ENSOGAG00000029379	-	98	40.074	Otolemur_garnettii
ENSCING00000023482	-	98	41.977	ENSOGAG00000005581	-	99	41.977	Otolemur_garnettii
ENSCING00000023482	-	98	41.396	ENSOARG00000014479	RPA1	99	41.408	Ovis_aries
ENSCING00000023482	-	98	42.553	ENSPPAG00000039680	RPA1	99	42.557	Pan_paniscus
ENSCING00000023482	-	98	41.503	ENSPPRG00000011807	RPA1	99	41.503	Panthera_pardus
ENSCING00000023482	-	98	41.503	ENSPTIG00000007898	RPA1	99	41.503	Panthera_tigris_altaica
ENSCING00000023482	-	98	42.553	ENSPTRG00000008539	RPA1	99	42.557	Pan_troglodytes
ENSCING00000023482	-	98	42.741	ENSPANG00000024592	RPA1	99	42.741	Papio_anubis
ENSCING00000023482	-	94	44.330	ENSPKIG00000008053	rpa1	94	44.674	Paramormyrops_kingsleyae
ENSCING00000023482	-	97	42.504	ENSPSIG00000015617	RPA1	99	42.504	Pelodiscus_sinensis
ENSCING00000023482	-	99	41.625	ENSPMGG00000011589	rpa1	99	41.625	Periophthalmus_magnuspinnatus
ENSCING00000023482	-	99	41.899	ENSPMGG00000000543	RPA1	99	43.416	Periophthalmus_magnuspinnatus
ENSCING00000023482	-	99	40.939	ENSPEMG00000021061	Rpa1	99	40.939	Peromyscus_maniculatus_bairdii
ENSCING00000023482	-	98	42.717	ENSPCIG00000019049	RPA1	98	43.372	Phascolarctos_cinereus
ENSCING00000023482	-	99	43.234	ENSPFOG00000003987	rpa1	99	43.234	Poecilia_formosa
ENSCING00000023482	-	99	43.212	ENSPLAG00000004984	rpa1	99	43.212	Poecilia_latipinna
ENSCING00000023482	-	93	40.843	ENSPLAG00000008844	-	96	40.843	Poecilia_latipinna
ENSCING00000023482	-	93	40.419	ENSPMEG00000003627	-	96	40.939	Poecilia_mexicana
ENSCING00000023482	-	99	43.234	ENSPMEG00000020602	rpa1	99	44.248	Poecilia_mexicana
ENSCING00000023482	-	99	47.527	ENSPREG00000010119	RPA1	93	48.046	Poecilia_reticulata
ENSCING00000023482	-	92	40.141	ENSPREG00000010174	rpa1	95	40.141	Poecilia_reticulata
ENSCING00000023482	-	98	41.491	ENSPCOG00000001799	RPA1	99	41.491	Propithecus_coquereli
ENSCING00000023482	-	99	40.705	ENSPVAG00000002149	RPA1	99	40.705	Pteropus_vampyrus
ENSCING00000023482	-	99	44.610	ENSPNYG00000016316	rpa1	99	44.610	Pundamilia_nyererei
ENSCING00000023482	-	99	41.433	ENSPNYG00000024165	RPA1	99	41.433	Pundamilia_nyererei
ENSCING00000023482	-	99	37.194	ENSPNAG00000008599	rpa1	99	37.357	Pygocentrus_nattereri
ENSCING00000023482	-	95	47.619	ENSRNOG00000003123	Rpa1	99	42.326	Rattus_norvegicus
ENSCING00000023482	-	98	42.390	ENSRBIG00000036587	RPA1	99	42.390	Rhinopithecus_bieti
ENSCING00000023482	-	98	39.607	ENSRROG00000043278	RPA1	99	39.607	Rhinopithecus_roxellana
ENSCING00000023482	-	98	33.387	YAR007C	RFA1	98	33.387	Saccharomyces_cerevisiae
ENSCING00000023482	-	90	44.365	ENSSBOG00000030233	RPA1	96	44.326	Saimiri_boliviensis_boliviensis
ENSCING00000023482	-	98	42.787	ENSSHAG00000007969	RPA1	98	42.464	Sarcophilus_harrisii
ENSCING00000023482	-	99	44.518	ENSSFOG00015005362	rpa1	91	44.518	Scleropages_formosus
ENSCING00000023482	-	96	48.602	ENSSMAG00000019746	RPA1	88	48.602	Scophthalmus_maximus
ENSCING00000023482	-	99	43.636	ENSSDUG00000011949	rpa1	99	43.636	Seriola_dumerili
ENSCING00000023482	-	90	49.885	ENSSDUG00000016358	RPA1	88	49.213	Seriola_dumerili
ENSCING00000023482	-	90	50.000	ENSSLDG00000020784	RPA1	81	49.213	Seriola_lalandi_dorsalis
ENSCING00000023482	-	99	43.802	ENSSLDG00000011806	rpa1	99	43.802	Seriola_lalandi_dorsalis
ENSCING00000023482	-	81	38.402	ENSSARG00000007506	RPA1	83	38.552	Sorex_araneus
ENSCING00000023482	-	97	41.528	ENSSPUG00000007223	RPA1	99	41.528	Sphenodon_punctatus
ENSCING00000023482	-	98	44.776	ENSSPAG00000011165	RPA1	98	44.776	Stegastes_partitus
ENSCING00000023482	-	99	42.504	ENSSPAG00000009903	rpa1	99	42.504	Stegastes_partitus
ENSCING00000023482	-	98	42.429	ENSSSCG00000017822	RPA1	99	42.429	Sus_scrofa
ENSCING00000023482	-	98	42.434	ENSTGUG00000005775	RPA1	99	42.434	Taeniopygia_guttata
ENSCING00000023482	-	91	49.306	ENSTRUG00000000405	RPA1	99	48.533	Takifugu_rubripes
ENSCING00000023482	-	99	43.586	ENSTRUG00000003616	rpa1	99	43.586	Takifugu_rubripes
ENSCING00000023482	-	99	45.172	ENSTNIG00000016199	rpa1	99	45.840	Tetraodon_nigroviridis
ENSCING00000023482	-	72	47.608	ENSTBEG00000002709	RPA1	73	47.608	Tupaia_belangeri
ENSCING00000023482	-	98	41.883	ENSTTRG00000001169	RPA1	99	42.283	Tursiops_truncatus
ENSCING00000023482	-	87	48.077	ENSUAMG00000015676	RPA1	97	48.077	Ursus_americanus
ENSCING00000023482	-	98	40.765	ENSUMAG00000009328	RPA1	99	40.909	Ursus_maritimus
ENSCING00000023482	-	98	41.205	ENSVPAG00000009443	RPA1	98	41.205	Vicugna_pacos
ENSCING00000023482	-	98	40.589	ENSVVUG00000021715	RPA1	99	40.783	Vulpes_vulpes
ENSCING00000023482	-	99	43.615	ENSXETG00000013538	rpa1	98	43.811	Xenopus_tropicalis
ENSCING00000023482	-	94	41.783	ENSXCOG00000010068	rpa1	95	42.707	Xiphophorus_couchianus
ENSCING00000023482	-	94	41.391	ENSXCOG00000009899	-	99	41.391	Xiphophorus_couchianus
ENSCING00000023482	-	99	47.312	ENSXMAG00000010333	RPA1	89	47.312	Xiphophorus_maculatus
ENSCING00000023482	-	98	42.928	ENSXMAG00000004102	rpa1	99	43.571	Xiphophorus_maculatus