EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000024199 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: pumilio homolog 3
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 5953 bases
Position: chr11:3520428-3526380
Accession: 100179066
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000030649	CPL	PF08144.11	1.2e-43	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000035158	-	1846	XM_018814072	ENSCINP00000030649	562 (aa)	XP_018669617	H2XLW7

Gene Model

Click here to download ENSCING00000024199's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000024199's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000024199	-	87	40.733	ENSG00000080608	PUM3	81	40.037	Homo_sapiens
ENSCING00000024199	-	99	37.024	ENSAPOG00000020252	pum3	87	37.024	Acanthochromis_polyacanthus
ENSCING00000024199	-	87	40.937	ENSAMEG00000012187	PUM3	81	40.402	Ailuropoda_melanoleuca
ENSCING00000024199	-	95	36.735	ENSACIG00000009786	pum3	88	36.735	Amphilophus_citrinellus
ENSCING00000024199	-	99	37.435	ENSAOCG00000004439	pum3	87	37.435	Amphiprion_ocellaris
ENSCING00000024199	-	99	37.435	ENSAPEG00000020523	pum3	87	37.435	Amphiprion_percula
ENSCING00000024199	-	91	39.458	ENSATEG00000005799	pum3	81	39.187	Anabas_testudineus
ENSCING00000024199	-	99	39.680	ENSAPLG00000002920	PUM3	86	40.036	Anas_platyrhynchos
ENSCING00000024199	-	86	41.201	ENSACAG00000003174	PUM3	95	39.336	Anolis_carolinensis
ENSCING00000024199	-	87	40.937	ENSANAG00000024520	PUM3	81	40.402	Aotus_nancymaae
ENSCING00000024199	-	99	37.153	ENSACLG00000001017	pum3	87	37.153	Astatotilapia_calliptera
ENSCING00000024199	-	97	38.241	ENSAMXG00000020911	pum3	86	39.318	Astyanax_mexicanus
ENSCING00000024199	-	96	39.488	ENSBTAG00000013357	PUM3	81	39.854	Bos_taurus
ENSCING00000024199	-	89	34.170	WBGene00014165	puf-12	65	34.170	Caenorhabditis_elegans
ENSCING00000024199	-	87	41.141	ENSCJAG00000010917	PUM3	81	40.585	Callithrix_jacchus
ENSCING00000024199	-	85	40.208	ENSCAFG00000002035	PUM3	81	39.488	Canis_familiaris
ENSCING00000024199	-	85	40.208	ENSCAFG00020026867	PUM3	81	39.488	Canis_lupus_dingo
ENSCING00000024199	-	96	39.854	ENSCHIG00000021559	PUM3	81	40.219	Capra_hircus
ENSCING00000024199	-	96	39.234	ENSTSYG00000007481	PUM3	81	40.037	Carlito_syrichta
ENSCING00000024199	-	82	41.469	ENSCAPG00000010592	-	77	40.848	Cavia_aperea
ENSCING00000024199	-	96	40.585	ENSCPOG00000008552	-	81	40.585	Cavia_porcellus
ENSCING00000024199	-	87	40.937	ENSCCAG00000032650	PUM3	81	40.402	Cebus_capucinus
ENSCING00000024199	-	96	39.854	ENSCATG00000024880	PUM3	81	40.219	Cercocebus_atys
ENSCING00000024199	-	87	40.733	ENSCLAG00000011892	PUM3	81	40.219	Chinchilla_lanigera
ENSCING00000024199	-	87	40.733	ENSCSAG00000008691	PUM3	81	40.219	Chlorocebus_sabaeus
ENSCING00000024199	-	68	38.381	ENSCHOG00000002535	PUM3	56	38.381	Choloepus_hoffmanni
ENSCING00000024199	-	87	41.548	ENSCPBG00000025470	PUM3	82	40.000	Chrysemys_picta_bellii
ENSCING00000024199	-	98	72.101	ENSCSAVG00000006072	-	93	73.387	Ciona_savignyi
ENSCING00000024199	-	87	40.733	ENSCANG00000006142	PUM3	81	40.037	Colobus_angolensis_palliatus
ENSCING00000024199	-	87	40.530	ENSCGRG00001016402	Pum3	81	40.037	Cricetulus_griseus_chok1gshd
ENSCING00000024199	-	87	40.530	ENSCGRG00000010207	Pum3	81	40.037	Cricetulus_griseus_crigri
ENSCING00000024199	-	93	37.570	ENSCSEG00000001565	pum3	91	37.570	Cynoglossus_semilaevis
ENSCING00000024199	-	51	31.597	ENSCVAG00000006550	pum3	63	31.597	Cyprinodon_variegatus
ENSCING00000024199	-	98	39.964	ENSDARG00000087779	pum3	92	38.188	Danio_rerio
ENSCING00000024199	-	87	36.382	ENSDNOG00000008157	PUM3	55	36.264	Dasypus_novemcinctus
ENSCING00000024199	-	87	38.493	ENSETEG00000015331	PUM3	78	38.302	Echinops_telfairi
ENSCING00000024199	-	88	36.759	ENSEBUG00000011586	pum3	75	36.452	Eptatretus_burgeri
ENSCING00000024199	-	87	41.141	ENSEASG00005010350	PUM3	81	40.659	Equus_asinus_asinus
ENSCING00000024199	-	87	40.937	ENSECAG00000017193	PUM3	81	40.476	Equus_caballus
ENSCING00000024199	-	94	35.337	ENSEEUG00000010314	PUM3	86	36.158	Erinaceus_europaeus
ENSCING00000024199	-	97	39.241	ENSELUG00000002215	pum3	84	39.241	Esox_lucius
ENSCING00000024199	-	98	41.472	ENSFALG00000010509	PUM3	82	41.472	Ficedula_albicollis
ENSCING00000024199	-	87	41.141	ENSFDAG00000021027	PUM3	81	40.402	Fukomys_damarensis
ENSCING00000024199	-	57	41.796	ENSFHEG00000015576	pum3	60	41.796	Fundulus_heteroclitus
ENSCING00000024199	-	86	40.329	ENSGMOG00000014217	pum3	89	40.329	Gadus_morhua
ENSCING00000024199	-	87	41.548	ENSGALG00000010178	PUM3	82	40.596	Gallus_gallus
ENSCING00000024199	-	57	41.875	ENSGAFG00000001930	pum3	67	37.437	Gambusia_affinis
ENSCING00000024199	-	91	37.911	ENSGACG00000017878	pum3	93	37.911	Gasterosteus_aculeatus
ENSCING00000024199	-	99	39.324	ENSGAGG00000018983	PUM3	88	40.280	Gopherus_agassizii
ENSCING00000024199	-	87	40.937	ENSGGOG00000006143	PUM3	81	40.402	Gorilla_gorilla
ENSCING00000024199	-	84	34.737	ENSHBUG00000012903	pum3	74	34.737	Haplochromis_burtoni
ENSCING00000024199	-	87	41.752	ENSHGLG00000015868	-	81	41.133	Heterocephalus_glaber_female
ENSCING00000024199	-	87	41.752	ENSHGLG00100018825	PUM3	81	41.133	Heterocephalus_glaber_male
ENSCING00000024199	-	94	39.326	ENSHCOG00000010306	pum3	80	39.091	Hippocampus_comes
ENSCING00000024199	-	96	40.221	ENSIPUG00000024801	pum3	84	39.636	Ictalurus_punctatus
ENSCING00000024199	-	87	41.752	ENSSTOG00000009586	PUM3	81	41.133	Ictidomys_tridecemlineatus
ENSCING00000024199	-	96	40.219	ENSJJAG00000012563	Pum3	81	40.219	Jaculus_jaculus
ENSCING00000024199	-	98	38.768	ENSKMAG00000010277	pum3	86	38.768	Kryptolebias_marmoratus
ENSCING00000024199	-	99	37.973	ENSLBEG00000012213	pum3	87	37.973	Labrus_bergylta
ENSCING00000024199	-	87	39.308	ENSLACG00000008312	PUM3	78	38.943	Latimeria_chalumnae
ENSCING00000024199	-	97	40.364	ENSLOCG00000012529	pum3	86	40.364	Lepisosteus_oculatus
ENSCING00000024199	-	87	40.326	ENSLAFG00000017341	PUM3	81	39.854	Loxodonta_africana
ENSCING00000024199	-	87	40.733	ENSMFAG00000001430	PUM3	81	40.219	Macaca_fascicularis
ENSCING00000024199	-	87	40.733	ENSMMUG00000002362	PUM3	80	40.219	Macaca_mulatta
ENSCING00000024199	-	87	40.733	ENSMNEG00000035288	PUM3	81	40.219	Macaca_nemestrina
ENSCING00000024199	-	87	40.733	ENSMLEG00000034820	PUM3	81	40.219	Mandrillus_leucophaeus
ENSCING00000024199	-	96	38.165	ENSMAMG00000022861	pum3	83	38.198	Mastacembelus_armatus
ENSCING00000024199	-	99	37.282	ENSMZEG00005014205	pum3	85	37.282	Maylandia_zebra
ENSCING00000024199	-	98	35.624	ENSMGAG00000002255	PUM3	95	35.624	Meleagris_gallopavo
ENSCING00000024199	-	87	40.733	ENSMAUG00000009733	Pum3	81	40.219	Mesocricetus_auratus
ENSCING00000024199	-	87	41.141	ENSMICG00000045916	PUM3	70	40.585	Microcebus_murinus
ENSCING00000024199	-	87	41.752	ENSMOCG00000019519	-	81	41.133	Microtus_ochrogaster
ENSCING00000024199	-	95	39.411	ENSMOCG00000014830	-	82	39.411	Microtus_ochrogaster
ENSCING00000024199	-	98	36.842	ENSMMOG00000012184	pum3	95	36.842	Mola_mola
ENSCING00000024199	-	90	41.071	ENSMODG00000015417	PUM3	72	40.734	Monodelphis_domestica
ENSCING00000024199	-	91	39.458	ENSMALG00000022164	pum3	78	40.076	Monopterus_albus
ENSCING00000024199	-	87	41.548	MGP_CAROLIEiJ_G0022845	Pum3	83	40.360	Mus_caroli
ENSCING00000024199	-	87	41.344	ENSMUSG00000041360	Pum3	83	40.180	Mus_musculus
ENSCING00000024199	-	87	41.141	MGP_PahariEiJ_G0014338	Pum3	78	40.755	Mus_pahari
ENSCING00000024199	-	87	41.548	MGP_SPRETEiJ_G0023763	Pum3	83	40.360	Mus_spretus
ENSCING00000024199	-	96	39.488	ENSMPUG00000005125	PUM3	81	39.488	Mustela_putorius_furo
ENSCING00000024199	-	87	39.919	ENSMLUG00000002309	PUM3	81	39.305	Myotis_lucifugus
ENSCING00000024199	-	87	39.715	ENSNGAG00000019468	Pum3	81	39.083	Nannospalax_galili
ENSCING00000024199	-	84	36.842	ENSNBRG00000021370	pum3	73	36.842	Neolamprologus_brichardi
ENSCING00000024199	-	87	40.733	ENSNLEG00000008712	PUM3	81	40.219	Nomascus_leucogenys
ENSCING00000024199	-	65	38.393	ENSMEUG00000013606	-	75	38.800	Notamacropus_eugenii
ENSCING00000024199	-	61	34.203	ENSOPRG00000004225	-	60	33.500	Ochotona_princeps
ENSCING00000024199	-	96	37.387	ENSODEG00000016477	-	80	37.273	Octodon_degus
ENSCING00000024199	-	87	41.344	ENSODEG00000003625	-	81	40.768	Octodon_degus
ENSCING00000024199	-	99	37.993	ENSONIG00000012733	pum3	84	37.993	Oreochromis_niloticus
ENSCING00000024199	-	86	39.959	ENSOANG00000014995	PUM3	91	39.272	Ornithorhynchus_anatinus
ENSCING00000024199	-	87	40.326	ENSOCUG00000004189	-	81	39.854	Oryctolagus_cuniculus
ENSCING00000024199	-	87	39.919	ENSOCUG00000026104	-	81	39.488	Oryctolagus_cuniculus
ENSCING00000024199	-	99	38.819	ENSORLG00000014935	pum3	85	38.819	Oryzias_latipes
ENSCING00000024199	-	99	38.640	ENSORLG00020002841	pum3	85	38.640	Oryzias_latipes_hni
ENSCING00000024199	-	99	38.640	ENSORLG00015015906	pum3	85	38.640	Oryzias_latipes_hsok
ENSCING00000024199	-	97	38.949	ENSOMEG00000009427	pum3	84	38.949	Oryzias_melastigma
ENSCING00000024199	-	87	30.426	ENSOGAG00000033481	-	82	30.182	Otolemur_garnettii
ENSCING00000024199	-	87	40.733	ENSOGAG00000008125	-	81	40.219	Otolemur_garnettii
ENSCING00000024199	-	96	39.372	ENSOARG00000013337	PUM3	80	40.037	Ovis_aries
ENSCING00000024199	-	87	40.937	ENSPPAG00000041337	PUM3	81	40.402	Pan_paniscus
ENSCING00000024199	-	87	40.326	ENSPPRG00000000809	PUM3	81	39.671	Panthera_pardus
ENSCING00000024199	-	87	40.530	ENSPTIG00000021934	PUM3	81	39.854	Panthera_tigris_altaica
ENSCING00000024199	-	87	40.937	ENSPTRG00000020735	PUM3	81	40.402	Pan_troglodytes
ENSCING00000024199	-	87	40.733	ENSPANG00000025118	PUM3	81	40.219	Papio_anubis
ENSCING00000024199	-	99	38.136	ENSPKIG00000022249	pum3	83	38.136	Paramormyrops_kingsleyae
ENSCING00000024199	-	99	39.572	ENSPSIG00000016272	PUM3	87	39.821	Pelodiscus_sinensis
ENSCING00000024199	-	83	38.925	ENSPMGG00000021261	pum3	91	38.925	Periophthalmus_magnuspinnatus
ENSCING00000024199	-	96	31.934	ENSPEMG00000019340	-	77	41.429	Peromyscus_maniculatus_bairdii
ENSCING00000024199	-	94	40.566	ENSPCIG00000030598	PUM3	68	40.566	Phascolarctos_cinereus
ENSCING00000024199	-	98	39.130	ENSPFOG00000001719	pum3	89	39.130	Poecilia_formosa
ENSCING00000024199	-	99	38.600	ENSPLAG00000020010	pum3	84	39.138	Poecilia_latipinna
ENSCING00000024199	-	98	37.801	ENSPMEG00000017451	pum3	87	37.852	Poecilia_mexicana
ENSCING00000024199	-	87	41.344	ENSPPYG00000019255	PUM3	81	40.768	Pongo_abelii
ENSCING00000024199	-	68	40.731	ENSPCAG00000005797	PUM3	56	40.731	Procavia_capensis
ENSCING00000024199	-	87	41.752	ENSPCOG00000027325	PUM3	82	40.884	Propithecus_coquereli
ENSCING00000024199	-	87	40.122	ENSPVAG00000016135	PUM3	73	39.842	Pteropus_vampyrus
ENSCING00000024199	-	99	37.153	ENSPNYG00000016124	pum3	88	37.153	Pundamilia_nyererei
ENSCING00000024199	-	87	41.141	ENSPNAG00000026524	pum3	81	40.189	Pygocentrus_nattereri
ENSCING00000024199	-	87	42.159	ENSRNOG00000048356	RGD1308750	81	41.499	Rattus_norvegicus
ENSCING00000024199	-	87	42.159	ENSRNOG00000012574	Pum3	81	41.499	Rattus_norvegicus
ENSCING00000024199	-	87	40.733	ENSRBIG00000036924	PUM3	81	40.037	Rhinopithecus_bieti
ENSCING00000024199	-	87	40.733	ENSRROG00000041089	PUM3	81	40.037	Rhinopithecus_roxellana
ENSCING00000024199	-	70	30.424	YDR496C	-	59	30.424	Saccharomyces_cerevisiae
ENSCING00000024199	-	87	41.141	ENSSBOG00000028066	PUM3	81	40.585	Saimiri_boliviensis_boliviensis
ENSCING00000024199	-	90	40.278	ENSSHAG00000003730	PUM3	82	39.677	Sarcophilus_harrisii
ENSCING00000024199	-	96	40.775	ENSSFOG00015018778	pum3	81	40.775	Scleropages_formosus
ENSCING00000024199	-	94	38.679	ENSSMAG00000013236	pum3	79	38.679	Scophthalmus_maximus
ENSCING00000024199	-	99	37.997	ENSSDUG00000001887	pum3	86	37.997	Seriola_dumerili
ENSCING00000024199	-	93	39.509	ENSSLDG00000015766	pum3	79	39.509	Seriola_lalandi_dorsalis
ENSCING00000024199	-	87	37.882	ENSSARG00000000579	PUM3	85	37.294	Sorex_araneus
ENSCING00000024199	-	99	38.819	ENSSPUG00000001707	PUM3	87	38.819	Sphenodon_punctatus
ENSCING00000024199	-	99	37.651	ENSSPAG00000003976	pum3	87	37.651	Stegastes_partitus
ENSCING00000024199	-	96	39.963	ENSSSCG00000005227	PUM3	81	40.129	Sus_scrofa
ENSCING00000024199	-	87	41.870	ENSTGUG00000005339	PUM3	82	40.575	Taeniopygia_guttata
ENSCING00000024199	-	99	38.710	ENSTRUG00000004074	pum3	82	38.710	Takifugu_rubripes
ENSCING00000024199	-	98	39.493	ENSTNIG00000010325	pum3	84	39.493	Tetraodon_nigroviridis
ENSCING00000024199	-	68	42.037	ENSTTRG00000001062	PUM3	56	42.037	Tursiops_truncatus
ENSCING00000024199	-	90	37.302	ENSUMAG00000018443	PUM3	92	37.302	Ursus_maritimus
ENSCING00000024199	-	96	39.927	ENSVPAG00000010766	PUM3	80	40.842	Vicugna_pacos
ENSCING00000024199	-	85	40.208	ENSVVUG00000006527	PUM3	81	39.488	Vulpes_vulpes
ENSCING00000024199	-	74	42.823	ENSXETG00000011707	pum3	68	41.794	Xenopus_tropicalis
ENSCING00000024199	-	99	36.508	ENSXCOG00000006725	pum3	92	36.508	Xiphophorus_couchianus
ENSCING00000024199	-	99	38.420	ENSXMAG00000002926	pum3	84	38.420	Xiphophorus_maculatus