EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000024456 (Gene tree)
Gene ID: 100178294
Gene Symbol: -
Alias: -
Full Name: DNA repair and recombination protein RAD54-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 8668 bases
Position: chrHT001097.1:36935-45602
Accession: 100178294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000036432	ResIII	PF04851.15	1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000036531	-	2619	XM_002130067	ENSCINP00000036432	765 (aa)	XP_002130103	H2Y3E7

Gene Model

Click here to download ENSCING00000024456's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000024456's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000024456	-	99	61.844	ENSG00000085999	RAD54L	100	77.333	Homo_sapiens
ENSCING00000024456	-	99	61.118	ENSAPOG00000011643	rad54l	99	61.248	Acanthochromis_polyacanthus
ENSCING00000024456	-	99	63.192	ENSAMEG00000013902	RAD54L	99	63.192	Ailuropoda_melanoleuca
ENSCING00000024456	-	99	62.532	ENSACIG00000001939	rad54l	99	62.661	Amphilophus_citrinellus
ENSCING00000024456	-	99	63.377	ENSAOCG00000017576	rad54l	100	63.506	Amphiprion_ocellaris
ENSCING00000024456	-	95	64.658	ENSAPEG00000020658	rad54l	97	64.795	Amphiprion_percula
ENSCING00000024456	-	96	65.116	ENSATEG00000006767	rad54l	99	65.116	Anabas_testudineus
ENSCING00000024456	-	95	64.932	ENSAPLG00000006389	RAD54L	99	64.932	Anas_platyrhynchos
ENSCING00000024456	-	99	62.580	ENSACAG00000002312	RAD54L	99	62.982	Anolis_carolinensis
ENSCING00000024456	-	99	62.211	ENSANAG00000035439	RAD54L	99	62.291	Aotus_nancymaae
ENSCING00000024456	-	99	62.387	ENSACLG00000018711	rad54l	99	62.516	Astatotilapia_calliptera
ENSCING00000024456	-	100	63.192	ENSAMXG00000012777	rad54l	100	63.320	Astyanax_mexicanus
ENSCING00000024456	-	99	63.333	ENSBTAG00000019901	RAD54L	99	63.415	Bos_taurus
ENSCING00000024456	-	95	55.256	WBGene00004298	rad-54	89	55.256	Caenorhabditis_elegans
ENSCING00000024456	-	96	62.533	ENSCJAG00000021080	RAD54L	91	62.617	Callithrix_jacchus
ENSCING00000024456	-	99	62.968	ENSCAFG00000004272	RAD54L	99	62.968	Canis_familiaris
ENSCING00000024456	-	99	62.920	ENSCAFG00020015066	RAD54L	99	62.920	Canis_lupus_dingo
ENSCING00000024456	-	99	63.286	ENSCHIG00000020118	RAD54L	99	63.368	Capra_hircus
ENSCING00000024456	-	99	62.162	ENSTSYG00000002032	RAD54L	99	62.242	Carlito_syrichta
ENSCING00000024456	-	99	62.339	ENSCPOG00000006768	RAD54L	99	62.420	Cavia_porcellus
ENSCING00000024456	-	99	62.339	ENSCCAG00000025783	RAD54L	99	62.420	Cebus_capucinus
ENSCING00000024456	-	99	62.113	ENSCATG00000030589	RAD54L	99	62.194	Cercocebus_atys
ENSCING00000024456	-	99	62.853	ENSCLAG00000004645	RAD54L	99	62.934	Chinchilla_lanigera
ENSCING00000024456	-	99	62.242	ENSCSAG00000001229	RAD54L	99	62.323	Chlorocebus_sabaeus
ENSCING00000024456	-	99	63.226	ENSCPBG00000005675	RAD54L	99	63.226	Chrysemys_picta_bellii
ENSCING00000024456	-	100	81.701	ENSCSAVG00000010859	-	100	81.701	Ciona_savignyi
ENSCING00000024456	-	99	62.242	ENSCANG00000034891	RAD54L	99	62.323	Colobus_angolensis_palliatus
ENSCING00000024456	-	99	63.015	ENSCGRG00001014807	Rad54l	99	63.097	Cricetulus_griseus_chok1gshd
ENSCING00000024456	-	99	63.015	ENSCGRG00000016038	Rad54l	99	63.097	Cricetulus_griseus_crigri
ENSCING00000024456	-	99	62.353	ENSCSEG00000001983	rad54l	99	62.484	Cynoglossus_semilaevis
ENSCING00000024456	-	82	69.758	ENSCVAG00000019561	rad54l	99	69.758	Cyprinodon_variegatus
ENSCING00000024456	-	100	64.424	ENSDARG00000018623	rad54l	100	64.554	Danio_rerio
ENSCING00000024456	-	99	62.051	ENSDNOG00000003395	RAD54L	99	62.291	Dasypus_novemcinctus
ENSCING00000024456	-	99	58.140	ENSDORG00000002632	Rad54l	99	58.203	Dipodomys_ordii
ENSCING00000024456	-	99	52.934	FBgn0002989	okr	95	52.934	Drosophila_melanogaster
ENSCING00000024456	-	78	59.596	ENSETEG00000000550	RAD54L	77	60.204	Echinops_telfairi
ENSCING00000024456	-	99	62.420	ENSEASG00005004511	RAD54L	96	66.764	Equus_asinus_asinus
ENSCING00000024456	-	99	62.725	ENSECAG00000008760	RAD54L	95	67.153	Equus_caballus
ENSCING00000024456	-	89	66.472	ENSEEUG00000008113	RAD54L	90	66.569	Erinaceus_europaeus
ENSCING00000024456	-	100	63.566	ENSELUG00000002295	rad54l	100	63.566	Esox_lucius
ENSCING00000024456	-	99	62.452	ENSFCAG00000003444	RAD54L	99	62.452	Felis_catus
ENSCING00000024456	-	99	63.742	ENSFALG00000009480	RAD54L	99	63.907	Ficedula_albicollis
ENSCING00000024456	-	99	62.388	ENSFDAG00000007806	RAD54L	99	62.468	Fukomys_damarensis
ENSCING00000024456	-	67	57.282	ENSFHEG00000009824	rad54l	83	57.282	Fundulus_heteroclitus
ENSCING00000024456	-	99	61.861	ENSGMOG00000014568	rad54l	99	61.861	Gadus_morhua
ENSCING00000024456	-	99	63.777	ENSGALG00000010356	RAD54L	92	63.777	Gallus_gallus
ENSCING00000024456	-	91	63.248	ENSGAFG00000011110	rad54l	99	63.248	Gambusia_affinis
ENSCING00000024456	-	100	62.646	ENSGACG00000003111	rad54l	98	62.646	Gasterosteus_aculeatus
ENSCING00000024456	-	99	62.872	ENSGAGG00000014089	RAD54L	96	62.872	Gopherus_agassizii
ENSCING00000024456	-	99	61.460	ENSGGOG00000010602	RAD54L	99	61.985	Gorilla_gorilla
ENSCING00000024456	-	99	62.257	ENSHBUG00000007793	rad54l	99	62.387	Haplochromis_burtoni
ENSCING00000024456	-	99	62.131	ENSHGLG00000000753	RAD54L	99	62.211	Heterocephalus_glaber_female
ENSCING00000024456	-	99	62.131	ENSHGLG00100016987	RAD54L	99	62.211	Heterocephalus_glaber_male
ENSCING00000024456	-	100	62.452	ENSIPUG00000015999	rad54l	100	65.021	Ictalurus_punctatus
ENSCING00000024456	-	99	62.388	ENSSTOG00000029125	RAD54L	99	62.388	Ictidomys_tridecemlineatus
ENSCING00000024456	-	99	52.191	ENSJJAG00000000235	-	99	52.191	Jaculus_jaculus
ENSCING00000024456	-	100	62.078	ENSKMAG00000009944	rad54l	100	62.208	Kryptolebias_marmoratus
ENSCING00000024456	-	99	62.953	ENSLBEG00000014617	rad54l	98	67.151	Labrus_bergylta
ENSCING00000024456	-	99	63.097	ENSLOCG00000004144	rad54l	100	64.356	Lepisosteus_oculatus
ENSCING00000024456	-	99	62.179	ENSLAFG00000007583	RAD54L	99	62.179	Loxodonta_africana
ENSCING00000024456	-	99	62.113	ENSMFAG00000031241	RAD54L	99	62.194	Macaca_fascicularis
ENSCING00000024456	-	99	62.113	ENSMMUG00000011568	RAD54L	99	62.194	Macaca_mulatta
ENSCING00000024456	-	99	61.985	ENSMNEG00000038562	RAD54L	99	62.065	Macaca_nemestrina
ENSCING00000024456	-	99	62.113	ENSMLEG00000038145	RAD54L	99	62.194	Mandrillus_leucophaeus
ENSCING00000024456	-	99	63.424	ENSMAMG00000022180	rad54l	99	67.686	Mastacembelus_armatus
ENSCING00000024456	-	99	62.387	ENSMZEG00005018081	rad54l	99	62.516	Maylandia_zebra
ENSCING00000024456	-	99	63.097	ENSMGAG00000010634	RAD54L	99	63.097	Meleagris_gallopavo
ENSCING00000024456	-	99	62.853	ENSMAUG00000020076	Rad54l	99	62.853	Mesocricetus_auratus
ENSCING00000024456	-	99	62.276	ENSMICG00000003266	RAD54L	99	62.806	Microcebus_murinus
ENSCING00000024456	-	99	63.484	ENSMOCG00000001778	Rad54l	99	63.566	Microtus_ochrogaster
ENSCING00000024456	-	99	60.283	ENSMALG00000021148	rad54l	99	60.283	Monopterus_albus
ENSCING00000024456	-	99	60.530	MGP_CAROLIEiJ_G0026325	Rad54l	99	60.606	Mus_caroli
ENSCING00000024456	-	99	63.158	ENSMUSG00000028702	Rad54l	99	63.239	Mus_musculus
ENSCING00000024456	-	99	63.320	MGP_PahariEiJ_G0028657	Rad54l	99	63.402	Mus_pahari
ENSCING00000024456	-	99	63.030	MGP_SPRETEiJ_G0027297	Rad54l	99	63.111	Mus_spretus
ENSCING00000024456	-	99	62.388	ENSMPUG00000012883	RAD54L	99	62.388	Mustela_putorius_furo
ENSCING00000024456	-	99	62.968	ENSMLUG00000003763	RAD54L	99	63.049	Myotis_lucifugus
ENSCING00000024456	-	99	62.853	ENSNGAG00000024213	Rad54l	99	62.934	Nannospalax_galili
ENSCING00000024456	-	99	62.033	ENSNLEG00000016548	RAD54L	99	62.113	Nomascus_leucogenys
ENSCING00000024456	-	89	63.227	ENSMEUG00000006793	RAD54L	99	63.690	Notamacropus_eugenii
ENSCING00000024456	-	89	67.596	ENSOPRG00000016016	RAD54L	90	67.596	Ochotona_princeps
ENSCING00000024456	-	99	61.941	ENSODEG00000008519	RAD54L	99	62.339	Octodon_degus
ENSCING00000024456	-	99	62.127	ENSONIG00000007659	rad54l	99	62.257	Oreochromis_niloticus
ENSCING00000024456	-	99	62.596	ENSOCUG00000005229	RAD54L	99	62.677	Oryctolagus_cuniculus
ENSCING00000024456	-	99	62.205	ENSORLG00000002958	rad54l	99	62.533	Oryzias_latipes
ENSCING00000024456	-	99	62.663	ENSORLG00020006554	rad54l	99	66.569	Oryzias_latipes_hni
ENSCING00000024456	-	99	62.205	ENSORLG00015002907	rad54l	99	62.663	Oryzias_latipes_hsok
ENSCING00000024456	-	99	62.581	ENSOMEG00000007770	rad54l	99	62.581	Oryzias_melastigma
ENSCING00000024456	-	99	63.252	ENSOARG00000002264	RAD54L	99	63.333	Ovis_aries
ENSCING00000024456	-	99	61.765	ENSPPAG00000031222	RAD54L	99	62.242	Pan_paniscus
ENSCING00000024456	-	99	62.452	ENSPPRG00000010317	RAD54L	99	62.452	Panthera_pardus
ENSCING00000024456	-	99	62.452	ENSPTIG00000012200	RAD54L	99	62.452	Panthera_tigris_altaica
ENSCING00000024456	-	99	61.727	ENSPTRG00000000689	RAD54L	99	62.242	Pan_troglodytes
ENSCING00000024456	-	99	62.113	ENSPANG00000016295	RAD54L	99	62.194	Papio_anubis
ENSCING00000024456	-	100	61.248	ENSPKIG00000016172	rad54l	100	61.508	Paramormyrops_kingsleyae
ENSCING00000024456	-	96	64.393	ENSPSIG00000003258	RAD54L	96	64.393	Pelodiscus_sinensis
ENSCING00000024456	-	99	61.549	ENSPMGG00000016335	rad54l	99	61.811	Periophthalmus_magnuspinnatus
ENSCING00000024456	-	99	63.097	ENSPEMG00000011422	Rad54l	99	63.178	Peromyscus_maniculatus_bairdii
ENSCING00000024456	-	99	57.328	ENSPMAG00000007719	rad54l	99	57.328	Petromyzon_marinus
ENSCING00000024456	-	99	62.516	ENSPCIG00000029032	RAD54L	99	62.920	Phascolarctos_cinereus
ENSCING00000024456	-	87	65.762	ENSPFOG00000013732	rad54l	99	65.762	Poecilia_formosa
ENSCING00000024456	-	81	66.348	ENSPLAG00000023416	rad54l	99	66.348	Poecilia_latipinna
ENSCING00000024456	-	91	63.960	ENSPMEG00000008299	rad54l	99	63.960	Poecilia_mexicana
ENSCING00000024456	-	100	62.242	ENSPREG00000019955	rad54l	100	62.242	Poecilia_reticulata
ENSCING00000024456	-	94	59.365	ENSPPYG00000001398	RAD54L	99	59.396	Pongo_abelii
ENSCING00000024456	-	69	69.906	ENSPCAG00000005323	RAD54L	70	69.906	Procavia_capensis
ENSCING00000024456	-	99	62.532	ENSPCOG00000015423	RAD54L	99	63.063	Propithecus_coquereli
ENSCING00000024456	-	89	64.869	ENSPNYG00000002942	rad54l	94	65.123	Pundamilia_nyererei
ENSCING00000024456	-	100	63.389	ENSPNAG00000012483	rad54l	100	63.519	Pygocentrus_nattereri
ENSCING00000024456	-	99	63.205	ENSRNOG00000013148	Rad54l	99	63.286	Rattus_norvegicus
ENSCING00000024456	-	99	62.113	ENSRBIG00000043495	RAD54L	99	62.194	Rhinopithecus_bieti
ENSCING00000024456	-	99	62.242	ENSRROG00000020844	RAD54L	99	62.323	Rhinopithecus_roxellana
ENSCING00000024456	-	80	46.718	YGL163C	RAD54	71	47.432	Saccharomyces_cerevisiae
ENSCING00000024456	-	99	62.468	ENSSBOG00000024672	RAD54L	99	62.548	Saimiri_boliviensis_boliviensis
ENSCING00000024456	-	99	62.887	ENSSHAG00000000110	RAD54L	99	62.839	Sarcophilus_harrisii
ENSCING00000024456	-	100	62.806	ENSSDUG00000019147	rad54l	100	62.887	Seriola_dumerili
ENSCING00000024456	-	100	62.887	ENSSLDG00000012330	rad54l	96	67.493	Seriola_lalandi_dorsalis
ENSCING00000024456	-	73	69.217	ENSSARG00000006689	RAD54L	89	69.340	Sorex_araneus
ENSCING00000024456	-	99	62.208	ENSSPAG00000011016	rad54l	100	62.338	Stegastes_partitus
ENSCING00000024456	-	99	62.887	ENSSSCG00000003905	RAD54L	99	62.968	Sus_scrofa
ENSCING00000024456	-	99	63.871	ENSTGUG00000008233	RAD54L	99	64.212	Taeniopygia_guttata
ENSCING00000024456	-	90	66.521	ENSTRUG00000008410	rad54l	95	66.521	Takifugu_rubripes
ENSCING00000024456	-	99	60.471	ENSTNIG00000004716	rad54l	99	60.390	Tetraodon_nigroviridis
ENSCING00000024456	-	89	63.848	ENSTTRG00000006315	RAD54L	90	63.942	Tursiops_truncatus
ENSCING00000024456	-	99	63.260	ENSUAMG00000011824	RAD54L	99	63.260	Ursus_americanus
ENSCING00000024456	-	99	62.145	ENSUMAG00000023603	RAD54L	99	62.145	Ursus_maritimus
ENSCING00000024456	-	99	63.097	ENSVVUG00000007201	RAD54L	99	63.097	Vulpes_vulpes
ENSCING00000024456	-	95	60.734	ENSXETG00000004369	rad54l	97	60.739	Xenopus_tropicalis
ENSCING00000024456	-	55	63.420	ENSXCOG00000016028	rad54l	84	63.420	Xiphophorus_couchianus