EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000024933 (Gene tree)
Gene ID: 100182874
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 636 bases
Position: chr4:1746326-1746961
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000029798	RNA_pol_Rpb5_N	PF03871.14	7.7e-37	1	1
ENSCINP00000029798	RNA_pol_Rpb5_C	PF01191.19	4e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000033537	-	636	-	ENSCINP00000029798	211 (aa)	-	H2XJG6

Gene Model

Click here to download ENSCING00000024933's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000024933's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000024933	-	99	85.714	ENSG00000099817	POLR2E	100	85.714	Homo_sapiens
ENSCING00000024933	-	99	86.190	ENSAPOG00000002935	polr2eb	100	86.190	Acanthochromis_polyacanthus
ENSCING00000024933	-	99	86.190	ENSAMEG00000003159	POLR2E	100	86.190	Ailuropoda_melanoleuca
ENSCING00000024933	-	99	74.762	ENSACIG00000024371	polr2eb	100	74.762	Amphilophus_citrinellus
ENSCING00000024933	-	99	86.190	ENSAOCG00000018166	polr2eb	100	86.190	Amphiprion_ocellaris
ENSCING00000024933	-	99	86.190	ENSAPEG00000009000	polr2eb	100	86.190	Amphiprion_percula
ENSCING00000024933	-	99	86.190	ENSATEG00000023760	polr2eb	100	86.190	Anabas_testudineus
ENSCING00000024933	-	99	86.190	ENSANAG00000038488	POLR2E	100	86.190	Aotus_nancymaae
ENSCING00000024933	-	99	86.667	ENSACLG00000005254	polr2eb	100	86.667	Astatotilapia_calliptera
ENSCING00000024933	-	99	85.714	ENSAMXG00000018915	POLR2E	100	85.714	Astyanax_mexicanus
ENSCING00000024933	-	99	86.190	ENSBTAG00000020776	POLR2E	100	86.190	Bos_taurus
ENSCING00000024933	-	99	78.365	WBGene00019246	rpb-5	99	78.365	Caenorhabditis_elegans
ENSCING00000024933	-	66	82.857	ENSCJAG00000007666	-	77	82.857	Callithrix_jacchus
ENSCING00000024933	-	99	83.333	ENSCAFG00000019546	POLR2E	100	83.333	Canis_familiaris
ENSCING00000024933	-	99	86.190	ENSCAFG00020017111	POLR2E	100	86.190	Canis_lupus_dingo
ENSCING00000024933	-	99	86.190	ENSCHIG00000014151	POLR2E	100	86.190	Capra_hircus
ENSCING00000024933	-	99	72.170	ENSTSYG00000026377	POLR2E	100	72.170	Carlito_syrichta
ENSCING00000024933	-	91	86.458	ENSCAPG00000010843	POLR2E	93	86.458	Cavia_aperea
ENSCING00000024933	-	99	86.190	ENSCPOG00000001542	POLR2E	100	86.190	Cavia_porcellus
ENSCING00000024933	-	99	86.190	ENSCCAG00000025658	POLR2E	100	86.190	Cebus_capucinus
ENSCING00000024933	-	99	86.190	ENSCATG00000008926	POLR2E	100	86.190	Cercocebus_atys
ENSCING00000024933	-	99	86.190	ENSCLAG00000014874	-	100	86.190	Chinchilla_lanigera
ENSCING00000024933	-	97	65.366	ENSCLAG00000009238	-	100	65.366	Chinchilla_lanigera
ENSCING00000024933	-	99	86.190	ENSCSAG00000012336	POLR2E	100	86.190	Chlorocebus_sabaeus
ENSCING00000024933	-	99	86.190	ENSCPBG00000009702	POLR2E	100	86.190	Chrysemys_picta_bellii
ENSCING00000024933	-	99	86.190	ENSCANG00000025560	POLR2E	100	86.190	Colobus_angolensis_palliatus
ENSCING00000024933	-	99	85.714	ENSCGRG00001022927	Polr2e	100	85.714	Cricetulus_griseus_chok1gshd
ENSCING00000024933	-	99	80.930	ENSCGRG00000016441	Polr2e	100	80.930	Cricetulus_griseus_crigri
ENSCING00000024933	-	99	86.190	ENSCSEG00000007107	polr2eb	92	86.190	Cynoglossus_semilaevis
ENSCING00000024933	-	99	86.190	ENSCVAG00000019940	polr2eb	100	86.190	Cyprinodon_variegatus
ENSCING00000024933	-	99	85.714	ENSDARG00000026183	polr2eb	100	85.714	Danio_rerio
ENSCING00000024933	-	90	85.789	ENSDNOG00000044994	POLR2E	84	85.789	Dasypus_novemcinctus
ENSCING00000024933	-	99	86.190	ENSDORG00000001154	Polr2e	100	86.190	Dipodomys_ordii
ENSCING00000024933	-	99	84.211	FBgn0033571	Rpb5	99	84.211	Drosophila_melanogaster
ENSCING00000024933	-	73	83.871	ENSEBUG00000010159	-	75	83.871	Eptatretus_burgeri
ENSCING00000024933	-	69	81.379	ENSEASG00005021615	POLR2E	61	81.379	Equus_asinus_asinus
ENSCING00000024933	-	91	84.817	ENSECAG00000011124	POLR2E	100	74.286	Equus_caballus
ENSCING00000024933	-	99	85.238	ENSELUG00000020646	polr2e	100	85.238	Esox_lucius
ENSCING00000024933	-	99	86.190	ENSELUG00000005815	POLR2E	100	86.190	Esox_lucius
ENSCING00000024933	-	99	85.714	ENSFCAG00000007318	POLR2E	100	85.714	Felis_catus
ENSCING00000024933	-	91	86.458	ENSFALG00000013986	POLR2E	99	86.458	Ficedula_albicollis
ENSCING00000024933	-	99	86.190	ENSFDAG00000014539	POLR2E	100	86.190	Fukomys_damarensis
ENSCING00000024933	-	99	86.190	ENSFHEG00000022398	polr2eb	100	86.190	Fundulus_heteroclitus
ENSCING00000024933	-	99	85.238	ENSGMOG00000007615	polr2eb	100	85.238	Gadus_morhua
ENSCING00000024933	-	99	86.190	ENSGALG00000002591	POLR2E	100	86.190	Gallus_gallus
ENSCING00000024933	-	99	86.667	ENSGAFG00000005087	polr2eb	100	86.667	Gambusia_affinis
ENSCING00000024933	-	99	85.714	ENSGACG00000013247	polr2eb	100	85.714	Gasterosteus_aculeatus
ENSCING00000024933	-	99	86.190	ENSGAGG00000008356	POLR2E	100	86.190	Gopherus_agassizii
ENSCING00000024933	-	99	86.190	ENSGGOG00000011267	POLR2E	100	86.190	Gorilla_gorilla
ENSCING00000024933	-	67	83.099	ENSHBUG00000011099	polr2eb	100	83.099	Haplochromis_burtoni
ENSCING00000024933	-	99	85.714	ENSHGLG00000013330	POLR2E	100	85.714	Heterocephalus_glaber_female
ENSCING00000024933	-	99	85.714	ENSHGLG00100011014	POLR2E	100	85.714	Heterocephalus_glaber_male
ENSCING00000024933	-	99	85.238	ENSHCOG00000000906	polr2eb	100	85.238	Hippocampus_comes
ENSCING00000024933	-	53	83.929	ENSHCOG00000012099	-	88	83.929	Hippocampus_comes
ENSCING00000024933	-	99	86.190	ENSIPUG00000019801	polr2e	100	86.190	Ictalurus_punctatus
ENSCING00000024933	-	99	86.190	ENSSTOG00000002853	POLR2E	100	86.190	Ictidomys_tridecemlineatus
ENSCING00000024933	-	99	70.000	ENSJJAG00000003145	-	100	70.000	Jaculus_jaculus
ENSCING00000024933	-	76	70.000	ENSJJAG00000015812	-	99	70.000	Jaculus_jaculus
ENSCING00000024933	-	99	85.714	ENSJJAG00000016595	-	100	85.714	Jaculus_jaculus
ENSCING00000024933	-	99	86.190	ENSKMAG00000005954	polr2eb	100	86.190	Kryptolebias_marmoratus
ENSCING00000024933	-	99	86.190	ENSLBEG00000024802	polr2eb	100	86.190	Labrus_bergylta
ENSCING00000024933	-	99	86.667	ENSLACG00000013686	POLR2E	100	86.667	Latimeria_chalumnae
ENSCING00000024933	-	77	85.185	ENSLOCG00000004599	POLR2E	100	85.185	Lepisosteus_oculatus
ENSCING00000024933	-	99	69.953	ENSLAFG00000025587	POLR2E	100	69.953	Loxodonta_africana
ENSCING00000024933	-	99	86.190	ENSMFAG00000002884	POLR2E	100	86.190	Macaca_fascicularis
ENSCING00000024933	-	99	86.190	ENSMMUG00000013927	POLR2E	100	86.190	Macaca_mulatta
ENSCING00000024933	-	99	57.820	ENSMNEG00000033452	-	100	57.820	Macaca_nemestrina
ENSCING00000024933	-	99	86.190	ENSMNEG00000034046	-	100	86.190	Macaca_nemestrina
ENSCING00000024933	-	91	70.466	ENSMLEG00000012405	POLR2E	94	70.466	Mandrillus_leucophaeus
ENSCING00000024933	-	99	86.190	ENSMAMG00000018703	polr2eb	100	86.190	Mastacembelus_armatus
ENSCING00000024933	-	90	86.316	ENSMZEG00005010796	polr2eb	96	86.316	Maylandia_zebra
ENSCING00000024933	-	99	85.308	ENSMGAG00000003769	POLR2E	100	85.308	Meleagris_gallopavo
ENSCING00000024933	-	91	85.864	ENSMAUG00000010125	-	100	85.864	Mesocricetus_auratus
ENSCING00000024933	-	99	59.048	ENSMAUG00000011003	-	100	59.048	Mesocricetus_auratus
ENSCING00000024933	-	99	86.190	ENSMICG00000013063	POLR2E	100	86.190	Microcebus_murinus
ENSCING00000024933	-	99	85.714	ENSMOCG00000013414	Polr2e	100	85.714	Microtus_ochrogaster
ENSCING00000024933	-	99	72.857	ENSMMOG00000001161	polr2eb	100	72.857	Mola_mola
ENSCING00000024933	-	91	79.058	ENSMMOG00000001167	polr2eb	88	79.058	Mola_mola
ENSCING00000024933	-	99	86.190	ENSMODG00000005494	POLR2E	100	86.190	Monodelphis_domestica
ENSCING00000024933	-	99	86.667	ENSMALG00000021888	polr2eb	100	86.667	Monopterus_albus
ENSCING00000024933	-	99	85.714	MGP_CAROLIEiJ_G0015561	Polr2e	100	85.714	Mus_caroli
ENSCING00000024933	-	99	85.714	ENSMUSG00000004667	Polr2e	100	85.714	Mus_musculus
ENSCING00000024933	-	99	85.714	MGP_PahariEiJ_G0030974	Polr2e	100	85.714	Mus_pahari
ENSCING00000024933	-	99	85.714	MGP_SPRETEiJ_G0016379	Polr2e	100	85.714	Mus_spretus
ENSCING00000024933	-	99	85.238	ENSMPUG00000008953	POLR2E	100	85.238	Mustela_putorius_furo
ENSCING00000024933	-	99	86.190	ENSMLUG00000013193	POLR2E	100	86.190	Myotis_lucifugus
ENSCING00000024933	-	65	81.159	ENSMLUG00000006376	-	93	76.000	Myotis_lucifugus
ENSCING00000024933	-	99	85.714	ENSNGAG00000001147	Polr2e	100	85.714	Nannospalax_galili
ENSCING00000024933	-	88	61.622	ENSNGAG00000017344	-	99	61.622	Nannospalax_galili
ENSCING00000024933	-	99	74.762	ENSNBRG00000022772	polr2eb	100	74.762	Neolamprologus_brichardi
ENSCING00000024933	-	99	83.412	ENSNLEG00000001207	-	100	83.412	Nomascus_leucogenys
ENSCING00000024933	-	99	65.238	ENSNLEG00000031364	-	100	65.238	Nomascus_leucogenys
ENSCING00000024933	-	99	75.238	ENSOPRG00000008331	POLR2E	100	75.238	Ochotona_princeps
ENSCING00000024933	-	99	86.190	ENSODEG00000013230	-	100	86.190	Octodon_degus
ENSCING00000024933	-	99	62.857	ENSODEG00000011490	-	100	62.857	Octodon_degus
ENSCING00000024933	-	88	76.882	ENSODEG00000007985	-	100	76.882	Octodon_degus
ENSCING00000024933	-	99	86.190	ENSONIG00000002519	polr2eb	100	86.190	Oreochromis_niloticus
ENSCING00000024933	-	99	86.667	ENSORLG00000015346	polr2eb	100	86.667	Oryzias_latipes
ENSCING00000024933	-	99	86.667	ENSORLG00020020700	polr2e	100	86.667	Oryzias_latipes_hni
ENSCING00000024933	-	99	86.667	ENSORLG00015016842	polr2e	100	86.667	Oryzias_latipes_hsok
ENSCING00000024933	-	99	86.190	ENSOMEG00000002709	polr2eb	100	86.190	Oryzias_melastigma
ENSCING00000024933	-	99	86.190	ENSOGAG00000012311	POLR2E	100	86.190	Otolemur_garnettii
ENSCING00000024933	-	99	86.190	ENSOARG00000010994	POLR2E	100	86.190	Ovis_aries
ENSCING00000024933	-	91	86.387	ENSPPAG00000003145	POLR2E	100	86.387	Pan_paniscus
ENSCING00000024933	-	99	85.714	ENSPPRG00000000777	POLR2E	100	85.714	Panthera_pardus
ENSCING00000024933	-	96	63.235	ENSPTIG00000012237	POLR2E	98	81.579	Panthera_tigris_altaica
ENSCING00000024933	-	99	86.190	ENSPTRG00000010183	POLR2E	100	86.190	Pan_troglodytes
ENSCING00000024933	-	99	86.190	ENSPANG00000018011	POLR2E	100	86.190	Papio_anubis
ENSCING00000024933	-	99	86.190	ENSPKIG00000009607	POLR2E	100	86.190	Paramormyrops_kingsleyae
ENSCING00000024933	-	99	86.190	ENSPKIG00000024123	POLR2E	100	86.190	Paramormyrops_kingsleyae
ENSCING00000024933	-	97	83.415	ENSPSIG00000002870	POLR2E	99	83.415	Pelodiscus_sinensis
ENSCING00000024933	-	99	74.286	ENSPMGG00000014354	polr2eb	100	74.286	Periophthalmus_magnuspinnatus
ENSCING00000024933	-	99	85.714	ENSPEMG00000023261	Polr2e	100	85.714	Peromyscus_maniculatus_bairdii
ENSCING00000024933	-	90	85.714	ENSPCIG00000007312	POLR2E	75	85.714	Phascolarctos_cinereus
ENSCING00000024933	-	99	86.667	ENSPFOG00000005734	polr2eb	100	86.667	Poecilia_formosa
ENSCING00000024933	-	99	86.667	ENSPLAG00000014496	polr2eb	100	86.667	Poecilia_latipinna
ENSCING00000024933	-	99	86.667	ENSPMEG00000008053	polr2eb	100	86.667	Poecilia_mexicana
ENSCING00000024933	-	99	86.667	ENSPREG00000006489	polr2eb	100	86.667	Poecilia_reticulata
ENSCING00000024933	-	99	81.517	ENSPPYG00000009305	POLR2E	100	81.517	Pongo_abelii
ENSCING00000024933	-	53	85.586	ENSPCAG00000016605	POLR2E	100	85.586	Procavia_capensis
ENSCING00000024933	-	99	86.190	ENSPCOG00000014491	POLR2E	100	86.190	Propithecus_coquereli
ENSCING00000024933	-	55	86.207	ENSPVAG00000007718	-	65	90.476	Pteropus_vampyrus
ENSCING00000024933	-	90	86.316	ENSPNYG00000019797	polr2eb	96	86.316	Pundamilia_nyererei
ENSCING00000024933	-	99	85.714	ENSPNAG00000026263	POLR2E	100	85.714	Pygocentrus_nattereri
ENSCING00000024933	-	99	85.714	ENSRNOG00000013545	Polr2e	100	85.714	Rattus_norvegicus
ENSCING00000024933	-	99	86.190	ENSRBIG00000028726	-	100	86.190	Rhinopithecus_bieti
ENSCING00000024933	-	99	64.455	ENSRBIG00000027259	-	100	64.455	Rhinopithecus_bieti
ENSCING00000024933	-	99	86.190	ENSRROG00000043763	POLR2E	100	86.190	Rhinopithecus_roxellana
ENSCING00000024933	-	99	46.330	YBR154C	RPB5	98	46.330	Saccharomyces_cerevisiae
ENSCING00000024933	-	99	86.190	ENSSBOG00000027241	POLR2E	100	86.190	Saimiri_boliviensis_boliviensis
ENSCING00000024933	-	99	86.190	ENSSHAG00000010690	POLR2E	100	86.190	Sarcophilus_harrisii
ENSCING00000024933	-	99	86.190	ENSSFOG00015006073	polr2e	100	86.190	Scleropages_formosus
ENSCING00000024933	-	99	86.190	ENSSMAG00000012782	polr2eb	100	86.190	Scophthalmus_maximus
ENSCING00000024933	-	99	86.190	ENSSDUG00000003352	polr2eb	100	86.190	Seriola_dumerili
ENSCING00000024933	-	99	86.190	ENSSLDG00000004965	polr2eb	100	86.190	Seriola_lalandi_dorsalis
ENSCING00000024933	-	99	85.238	ENSSPUG00000006114	POLR2E	100	85.238	Sphenodon_punctatus
ENSCING00000024933	-	99	86.190	ENSSPAG00000017556	polr2eb	100	86.190	Stegastes_partitus
ENSCING00000024933	-	99	86.190	ENSSSCG00000021472	POLR2E	100	86.190	Sus_scrofa
ENSCING00000024933	-	66	79.433	ENSTGUG00000000922	POLR2E	99	79.433	Taeniopygia_guttata
ENSCING00000024933	-	98	80.583	ENSTRUG00000018238	polr2eb	100	74.286	Takifugu_rubripes
ENSCING00000024933	-	99	86.190	ENSTNIG00000013187	polr2eb	100	86.190	Tetraodon_nigroviridis
ENSCING00000024933	-	99	85.714	ENSTTRG00000001484	POLR2E	100	85.714	Tursiops_truncatus
ENSCING00000024933	-	92	82.990	ENSUAMG00000009166	POLR2E	100	73.810	Ursus_americanus
ENSCING00000024933	-	99	86.190	ENSVVUG00000022818	POLR2E	54	86.190	Vulpes_vulpes
ENSCING00000024933	-	99	85.714	ENSXETG00000003291	polr2e	100	85.714	Xenopus_tropicalis
ENSCING00000024933	-	99	74.762	ENSXCOG00000009197	polr2eb	100	74.762	Xiphophorus_couchianus
ENSCING00000024933	-	99	86.667	ENSXMAG00000026495	polr2eb	100	86.667	Xiphophorus_maculatus