EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000025102 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 5038 bases
Position: chrHT000177.1:79841-84878
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000029830	RRM_1	PF00076.22	1.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000036072	-	1193	-	ENSCINP00000029830	229 (aa)	-	H2XJJ8

Gene Model

Click here to download ENSCING00000025102's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000025102's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000025102	-	51	73.729	ENSG00000132819	RBM38	86	79.245	Homo_sapiens
ENSCING00000025102	-	66	62.893	ENSAPOG00000003301	rbm38	60	62.893	Acanthochromis_polyacanthus
ENSCING00000025102	-	66	61.935	ENSACIG00000000010	rbm38	59	61.935	Amphilophus_citrinellus
ENSCING00000025102	-	66	61.538	ENSACIG00000012502	-	96	76.991	Amphilophus_citrinellus
ENSCING00000025102	-	66	62.893	ENSAOCG00000013497	-	60	62.893	Amphiprion_ocellaris
ENSCING00000025102	-	66	62.893	ENSAPEG00000013137	rbm38	64	62.893	Amphiprion_percula
ENSCING00000025102	-	66	62.025	ENSATEG00000016710	-	61	60.510	Anabas_testudineus
ENSCING00000025102	-	70	60.241	ENSACAG00000016238	RBM38	60	62.500	Anolis_carolinensis
ENSCING00000025102	-	86	55.556	ENSANAG00000031959	RBM38	80	84.536	Aotus_nancymaae
ENSCING00000025102	-	66	62.179	ENSACLG00000019514	-	60	62.179	Astatotilapia_calliptera
ENSCING00000025102	-	71	62.195	ENSAMXG00000015601	-	66	62.733	Astyanax_mexicanus
ENSCING00000025102	-	99	46.281	ENSAMXG00000038120	rbm38	64	57.764	Astyanax_mexicanus
ENSCING00000025102	-	68	62.025	ENSBTAG00000008105	RBM38	63	62.025	Bos_taurus
ENSCING00000025102	-	86	56.039	ENSCJAG00000019139	RBM38	80	84.536	Callithrix_jacchus
ENSCING00000025102	-	68	61.392	ENSCHIG00000002609	RBM38	63	61.392	Capra_hircus
ENSCING00000025102	-	86	56.039	ENSCCAG00000036872	RBM38	80	84.536	Cebus_capucinus
ENSCING00000025102	-	68	63.057	ENSCPBG00000024059	RBM38	69	63.057	Chrysemys_picta_bellii
ENSCING00000025102	-	71	90.244	ENSCSAVG00000001132	-	74	81.218	Ciona_savignyi
ENSCING00000025102	-	76	58.989	ENSCVAG00000005472	-	62	62.733	Cyprinodon_variegatus
ENSCING00000025102	-	71	61.212	ENSDARG00000058818	rbm38	66	61.728	Danio_rerio
ENSCING00000025102	-	68	62.025	ENSDNOG00000032004	RBM38	51	79.245	Dasypus_novemcinctus
ENSCING00000025102	-	96	51.064	ENSELUG00000005849	-	64	62.963	Esox_lucius
ENSCING00000025102	-	68	62.420	ENSFALG00000010805	RBM38	78	62.420	Ficedula_albicollis
ENSCING00000025102	-	83	55.392	ENSFHEG00000006160	-	68	62.733	Fundulus_heteroclitus
ENSCING00000025102	-	68	61.783	ENSGALG00000026081	RBM38	69	61.783	Gallus_gallus
ENSCING00000025102	-	96	50.442	ENSGACG00000009873	-	68	59.873	Gasterosteus_aculeatus
ENSCING00000025102	-	68	63.057	ENSGAGG00000001187	RBM38	69	63.057	Gopherus_agassizii
ENSCING00000025102	-	66	61.783	ENSHBUG00000012058	rbm38	63	61.783	Haplochromis_burtoni
ENSCING00000025102	-	96	50.220	ENSHBUG00000011778	-	64	62.179	Haplochromis_burtoni
ENSCING00000025102	-	68	62.420	ENSHGLG00000015077	RBM38	63	62.420	Heterocephalus_glaber_female
ENSCING00000025102	-	96	48.684	ENSIPUG00000019349	-	65	59.877	Ictalurus_punctatus
ENSCING00000025102	-	66	60.897	ENSLBEG00000018878	rbm38	60	60.897	Labrus_bergylta
ENSCING00000025102	-	89	56.311	ENSLOCG00000003456	rbm38	63	66.013	Lepisosteus_oculatus
ENSCING00000025102	-	66	62.658	ENSMAMG00000020499	RBM38	60	61.538	Mastacembelus_armatus
ENSCING00000025102	-	96	50.220	ENSMZEG00005000849	-	64	62.179	Maylandia_zebra
ENSCING00000025102	-	66	61.783	ENSMZEG00005026036	rbm38	60	61.783	Maylandia_zebra
ENSCING00000025102	-	66	61.538	ENSMMOG00000020051	-	65	61.538	Mola_mola
ENSCING00000025102	-	68	62.420	ENSMODG00000016458	RBM38	64	62.420	Monodelphis_domestica
ENSCING00000025102	-	66	62.658	ENSMALG00000004680	RBM38	56	61.538	Monopterus_albus
ENSCING00000025102	-	68	56.024	ENSMALG00000022327	rbm38	66	56.287	Monopterus_albus
ENSCING00000025102	-	66	62.420	ENSNBRG00000022685	rbm38	62	62.420	Neolamprologus_brichardi
ENSCING00000025102	-	66	62.179	ENSNBRG00000022545	-	60	62.179	Neolamprologus_brichardi
ENSCING00000025102	-	66	62.179	ENSONIG00000020324	-	60	62.179	Oreochromis_niloticus
ENSCING00000025102	-	66	61.783	ENSONIG00000017073	rbm38	61	61.783	Oreochromis_niloticus
ENSCING00000025102	-	68	62.420	ENSOANG00000009259	RBM38	56	63.816	Ornithorhynchus_anatinus
ENSCING00000025102	-	66	60.510	ENSORLG00000012154	rbm38	59	60.510	Oryzias_latipes
ENSCING00000025102	-	66	61.783	ENSORLG00020017871	rbm38	59	61.783	Oryzias_latipes_hni
ENSCING00000025102	-	66	61.146	ENSORLG00015012606	rbm38	63	60.256	Oryzias_latipes_hsok
ENSCING00000025102	-	66	61.146	ENSOMEG00000006805	rbm38	59	61.146	Oryzias_melastigma
ENSCING00000025102	-	53	72.581	ENSOMEG00000023912	-	62	60.870	Oryzias_melastigma
ENSCING00000025102	-	70	58.929	ENSPKIG00000025417	rbm38	65	60.494	Paramormyrops_kingsleyae
ENSCING00000025102	-	68	62.420	ENSPSIG00000011649	RBM38	64	62.420	Pelodiscus_sinensis
ENSCING00000025102	-	68	62.420	ENSPCIG00000013648	RBM38	64	62.420	Phascolarctos_cinereus
ENSCING00000025102	-	53	70.732	ENSPFOG00000011658	rbm38	59	60.625	Poecilia_formosa
ENSCING00000025102	-	71	60.714	ENSPLAG00000002500	-	62	62.346	Poecilia_latipinna
ENSCING00000025102	-	53	70.732	ENSPLAG00000005218	rbm38	59	61.006	Poecilia_latipinna
ENSCING00000025102	-	53	70.732	ENSPMEG00000015770	rbm38	59	60.625	Poecilia_mexicana
ENSCING00000025102	-	53	70.732	ENSPREG00000007398	rbm38	59	60.625	Poecilia_reticulata
ENSCING00000025102	-	66	59.873	ENSPNYG00000021373	rbm38	63	61.146	Pundamilia_nyererei
ENSCING00000025102	-	96	50.220	ENSPNYG00000019727	-	96	76.991	Pundamilia_nyererei
ENSCING00000025102	-	70	61.585	ENSPNAG00000010596	rbm38	62	65.359	Pygocentrus_nattereri
ENSCING00000025102	-	96	51.121	ENSPNAG00000015123	-	75	81.443	Pygocentrus_nattereri
ENSCING00000025102	-	86	56.039	ENSSBOG00000031053	RBM38	91	84.536	Saimiri_boliviensis_boliviensis
ENSCING00000025102	-	76	56.742	ENSSDUG00000021082	RBM38	60	61.538	Seriola_dumerili
ENSCING00000025102	-	76	56.742	ENSSLDG00000011778	RBM38	60	61.538	Seriola_lalandi_dorsalis
ENSCING00000025102	-	66	62.420	ENSSPAG00000011113	rbm38	60	62.420	Stegastes_partitus
ENSCING00000025102	-	68	61.146	ENSXETG00000011268	rbm38	68	60.759	Xenopus_tropicalis