EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000000610 (Gene tree)
Gene ID: -
Gene Symbol: CMSS1
Alias: C3orf26|MGC4308
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 380488 bases
Position: chrNTIC01006668.1:82933572-83314059
Accession: 28666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000053583	CMS1	PF14617.6	2.9e-31	1	1
ENSCJAP00000057176	CMS1	PF14617.6	4.6e-31	1	1
ENSCJAP00000001058	CMS1	PF14617.6	4.6e-31	1	1
ENSCJAP00000053583	DEAD	PF00270.29	9.1e-06	1	1
ENSCJAP00000001058	DEAD	PF00270.29	1e-05	1	1
ENSCJAP00000057176	DEAD	PF00270.29	1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000085028	CMSS1-202	3410	-	ENSCJAP00000053583	262 (aa)	-	A0A2R8M4H0
ENSCJAT00000076684	CMSS1-201	843	-	ENSCJAP00000057176	280 (aa)	-	U3DEE0
ENSCJAT00000001125	CMSS1-203	834	-	ENSCJAP00000001058	277 (aa)	-	F7AK21

Gene Model

Click here to download ENSCJAG00000000610's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000000610's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000000610	CMSS1	100	92.857	ENSG00000184220	CMSS1	99	95.062	Homo_sapiens
ENSCJAG00000000610	CMSS1	77	64.356	ENSAPOG00000010604	cmss1	82	64.356	Acanthochromis_polyacanthus
ENSCJAG00000000610	CMSS1	99	88.462	ENSAMEG00000004092	CMSS1	100	88.462	Ailuropoda_melanoleuca
ENSCJAG00000000610	CMSS1	77	53.960	ENSACIG00000021854	cmss1	91	49.383	Amphilophus_citrinellus
ENSCJAG00000000610	CMSS1	100	51.020	ENSAOCG00000013361	cmss1	100	52.595	Amphiprion_ocellaris
ENSCJAG00000000610	CMSS1	100	51.034	ENSAPEG00000005829	cmss1	100	52.685	Amphiprion_percula
ENSCJAG00000000610	CMSS1	100	54.828	ENSATEG00000008209	cmss1	100	55.631	Anabas_testudineus
ENSCJAG00000000610	CMSS1	87	68.261	ENSAPLG00000010542	CMSS1	100	68.261	Anas_platyrhynchos
ENSCJAG00000000610	CMSS1	99	61.567	ENSACAG00000011065	CMSS1	98	61.567	Anolis_carolinensis
ENSCJAG00000000610	CMSS1	100	95.420	ENSANAG00000023565	CMSS1	100	95.420	Aotus_nancymaae
ENSCJAG00000000610	CMSS1	100	50.515	ENSACLG00000027294	cmss1	100	50.859	Astatotilapia_calliptera
ENSCJAG00000000610	CMSS1	100	47.826	ENSAMXG00000002046	cmss1	100	48.814	Astyanax_mexicanus
ENSCJAG00000000610	CMSS1	100	85.714	ENSBTAG00000013663	CMSS1	100	86.786	Bos_taurus
ENSCJAG00000000610	CMSS1	100	89.695	ENSCAFG00000009230	CMSS1	95	89.695	Canis_familiaris
ENSCJAG00000000610	CMSS1	93	80.408	ENSCAFG00020024156	-	76	80.408	Canis_lupus_dingo
ENSCJAG00000000610	CMSS1	98	90.310	ENSCAFG00020009464	-	95	90.000	Canis_lupus_dingo
ENSCJAG00000000610	CMSS1	98	87.984	ENSCHIG00000013003	CMSS1	93	87.984	Capra_hircus
ENSCJAG00000000610	CMSS1	99	88.803	ENSTSYG00000009266	CMSS1	99	88.803	Carlito_syrichta
ENSCJAG00000000610	CMSS1	85	71.491	ENSCAPG00000013584	CMSS1	87	78.534	Cavia_aperea
ENSCJAG00000000610	CMSS1	100	85.714	ENSCPOG00000014680	CMSS1	100	85.714	Cavia_porcellus
ENSCJAG00000000610	CMSS1	100	96.786	ENSCCAG00000034685	CMSS1	100	96.786	Cebus_capucinus
ENSCJAG00000000610	CMSS1	100	93.511	ENSCATG00000031980	CMSS1	100	93.511	Cercocebus_atys
ENSCJAG00000000610	CMSS1	87	92.576	ENSCLAG00000011241	CMSS1	98	92.576	Chinchilla_lanigera
ENSCJAG00000000610	CMSS1	94	94.286	ENSCSAG00000006024	CMSS1	100	94.286	Chlorocebus_sabaeus
ENSCJAG00000000610	CMSS1	100	68.214	ENSCHOG00000012098	CMSS1	100	68.214	Choloepus_hoffmanni
ENSCJAG00000000610	CMSS1	71	40.838	ENSCING00000014848	-	100	41.176	Ciona_intestinalis
ENSCJAG00000000610	CMSS1	100	92.857	ENSCANG00000031337	CMSS1	100	92.857	Colobus_angolensis_palliatus
ENSCJAG00000000610	CMSS1	100	81.429	ENSCGRG00001014305	Cmss1	100	81.429	Cricetulus_griseus_chok1gshd
ENSCJAG00000000610	CMSS1	97	81.961	ENSCGRG00000006722	Cmss1	99	81.961	Cricetulus_griseus_crigri
ENSCJAG00000000610	CMSS1	100	49.664	ENSCSEG00000004958	cmss1	100	50.164	Cynoglossus_semilaevis
ENSCJAG00000000610	CMSS1	100	52.414	ENSCVAG00000005039	cmss1	100	52.921	Cyprinodon_variegatus
ENSCJAG00000000610	CMSS1	100	47.841	ENSDARG00000112579	cmss1	100	48.822	Danio_rerio
ENSCJAG00000000610	CMSS1	100	85.115	ENSDNOG00000040418	CMSS1	95	84.644	Dasypus_novemcinctus
ENSCJAG00000000610	CMSS1	100	86.786	ENSDORG00000010461	Cmss1	100	86.786	Dipodomys_ordii
ENSCJAG00000000610	CMSS1	50	50.000	ENSEBUG00000002156	-	96	50.000	Eptatretus_burgeri
ENSCJAG00000000610	CMSS1	90	88.983	ENSEASG00005010966	CMSS1	92	93.069	Equus_asinus_asinus
ENSCJAG00000000610	CMSS1	98	87.984	ENSECAG00000015662	CMSS1	99	90.265	Equus_caballus
ENSCJAG00000000610	CMSS1	100	55.714	ENSEEUG00000007624	-	100	55.714	Erinaceus_europaeus
ENSCJAG00000000610	CMSS1	100	51.000	ENSELUG00000019459	cmss1	100	51.000	Esox_lucius
ENSCJAG00000000610	CMSS1	100	91.429	ENSFCAG00000044577	CMSS1	100	91.429	Felis_catus
ENSCJAG00000000610	CMSS1	91	64.854	ENSFALG00000005816	CMSS1	100	64.435	Ficedula_albicollis
ENSCJAG00000000610	CMSS1	87	89.912	ENSFDAG00000012577	CMSS1	100	89.912	Fukomys_damarensis
ENSCJAG00000000610	CMSS1	87	59.307	ENSFHEG00000012008	cmss1	95	59.307	Fundulus_heteroclitus
ENSCJAG00000000610	CMSS1	99	51.761	ENSGMOG00000016729	cmss1	100	52.113	Gadus_morhua
ENSCJAG00000000610	CMSS1	100	64.394	ENSGALG00000015267	CMSS1	100	64.751	Gallus_gallus
ENSCJAG00000000610	CMSS1	79	63.285	ENSGAFG00000021217	cmss1	77	63.366	Gambusia_affinis
ENSCJAG00000000610	CMSS1	99	48.592	ENSGACG00000002798	cmss1	100	49.648	Gasterosteus_aculeatus
ENSCJAG00000000610	CMSS1	100	63.929	ENSGAGG00000019861	CMSS1	99	65.909	Gopherus_agassizii
ENSCJAG00000000610	CMSS1	100	93.511	ENSGGOG00000014125	CMSS1	100	93.511	Gorilla_gorilla
ENSCJAG00000000610	CMSS1	100	49.338	ENSHBUG00000008431	cmss1	100	51.034	Haplochromis_burtoni
ENSCJAG00000000610	CMSS1	97	83.399	ENSHGLG00000019481	CMSS1	100	83.399	Heterocephalus_glaber_female
ENSCJAG00000000610	CMSS1	98	82.946	ENSHGLG00100010314	CMSS1	100	82.946	Heterocephalus_glaber_male
ENSCJAG00000000610	CMSS1	100	52.365	ENSHCOG00000003222	cmss1	100	54.237	Hippocampus_comes
ENSCJAG00000000610	CMSS1	100	49.662	ENSIPUG00000011591	cmss1	100	49.662	Ictalurus_punctatus
ENSCJAG00000000610	CMSS1	100	89.643	ENSSTOG00000019366	CMSS1	100	89.643	Ictidomys_tridecemlineatus
ENSCJAG00000000610	CMSS1	100	82.857	ENSJJAG00000014894	Cmss1	100	82.857	Jaculus_jaculus
ENSCJAG00000000610	CMSS1	77	53.960	ENSKMAG00000002390	cmss1	81	53.960	Kryptolebias_marmoratus
ENSCJAG00000000610	CMSS1	84	53.750	ENSLBEG00000006298	cmss1	83	59.606	Labrus_bergylta
ENSCJAG00000000610	CMSS1	87	64.783	ENSLACG00000009293	CMSS1	100	64.783	Latimeria_chalumnae
ENSCJAG00000000610	CMSS1	100	52.797	ENSLOCG00000009391	cmss1	100	53.710	Lepisosteus_oculatus
ENSCJAG00000000610	CMSS1	87	89.474	ENSLAFG00000017509	CMSS1	100	89.474	Loxodonta_africana
ENSCJAG00000000610	CMSS1	100	93.929	ENSMFAG00000045006	CMSS1	100	93.929	Macaca_fascicularis
ENSCJAG00000000610	CMSS1	100	93.571	ENSMMUG00000002939	CMSS1	100	93.571	Macaca_mulatta
ENSCJAG00000000610	CMSS1	100	93.571	ENSMNEG00000031315	CMSS1	100	93.571	Macaca_nemestrina
ENSCJAG00000000610	CMSS1	100	93.929	ENSMLEG00000033660	CMSS1	100	93.929	Mandrillus_leucophaeus
ENSCJAG00000000610	CMSS1	100	52.203	ENSMAMG00000017176	cmss1	100	53.242	Mastacembelus_armatus
ENSCJAG00000000610	CMSS1	100	50.515	ENSMZEG00005021886	cmss1	100	50.859	Maylandia_zebra
ENSCJAG00000000610	CMSS1	87	69.298	ENSMGAG00000014360	CMSS1	100	69.298	Meleagris_gallopavo
ENSCJAG00000000610	CMSS1	100	58.929	ENSMAUG00000020609	Cmss1	100	58.929	Mesocricetus_auratus
ENSCJAG00000000610	CMSS1	100	90.714	ENSMICG00000048977	CMSS1	100	90.714	Microcebus_murinus
ENSCJAG00000000610	CMSS1	100	80.000	ENSMOCG00000021937	Cmss1	100	80.000	Microtus_ochrogaster
ENSCJAG00000000610	CMSS1	77	63.366	ENSMMOG00000019794	cmss1	84	63.366	Mola_mola
ENSCJAG00000000610	CMSS1	98	74.615	ENSMODG00000002275	CMSS1	97	74.615	Monodelphis_domestica
ENSCJAG00000000610	CMSS1	100	52.234	ENSMALG00000004250	cmss1	100	52.218	Monopterus_albus
ENSCJAG00000000610	CMSS1	100	80.427	MGP_CAROLIEiJ_G0020824	Cmss1	100	80.427	Mus_caroli
ENSCJAG00000000610	CMSS1	100	81.139	ENSMUSG00000022748	Cmss1	100	81.139	Mus_musculus
ENSCJAG00000000610	CMSS1	100	80.427	MGP_PahariEiJ_G0016524	Cmss1	100	80.427	Mus_pahari
ENSCJAG00000000610	CMSS1	100	80.427	MGP_SPRETEiJ_G0021724	Cmss1	100	80.427	Mus_spretus
ENSCJAG00000000610	CMSS1	93	93.443	ENSMPUG00000011324	CMSS1	100	91.188	Mustela_putorius_furo
ENSCJAG00000000610	CMSS1	99	89.655	ENSMLUG00000001131	CMSS1	99	89.655	Myotis_lucifugus
ENSCJAG00000000610	CMSS1	99	85.714	ENSNGAG00000020316	Cmss1	100	84.286	Nannospalax_galili
ENSCJAG00000000610	CMSS1	100	48.845	ENSNBRG00000003095	cmss1	100	51.027	Neolamprologus_brichardi
ENSCJAG00000000610	CMSS1	100	94.643	ENSNLEG00000034172	CMSS1	100	94.643	Nomascus_leucogenys
ENSCJAG00000000610	CMSS1	87	65.351	ENSMEUG00000014505	CMSS1	100	65.351	Notamacropus_eugenii
ENSCJAG00000000610	CMSS1	100	91.429	ENSOPRG00000002986	CMSS1	100	91.429	Ochotona_princeps
ENSCJAG00000000610	CMSS1	100	75.000	ENSODEG00000001853	-	100	75.000	Octodon_degus
ENSCJAG00000000610	CMSS1	100	79.787	ENSODEG00000003558	-	100	79.787	Octodon_degus
ENSCJAG00000000610	CMSS1	100	69.286	ENSODEG00000009446	-	100	69.286	Octodon_degus
ENSCJAG00000000610	CMSS1	100	85.000	ENSODEG00000005226	-	100	85.000	Octodon_degus
ENSCJAG00000000610	CMSS1	84	57.466	ENSONIG00000006678	cmss1	93	54.959	Oreochromis_niloticus
ENSCJAG00000000610	CMSS1	98	71.154	ENSOANG00000007529	CMSS1	100	72.961	Ornithorhynchus_anatinus
ENSCJAG00000000610	CMSS1	100	89.695	ENSOCUG00000025366	CMSS1	95	89.695	Oryctolagus_cuniculus
ENSCJAG00000000610	CMSS1	100	51.712	ENSORLG00000020340	cmss1	100	51.712	Oryzias_latipes
ENSCJAG00000000610	CMSS1	87	54.148	ENSORLG00020012235	cmss1	98	53.913	Oryzias_latipes_hni
ENSCJAG00000000610	CMSS1	77	55.941	ENSORLG00015015551	cmss1	75	55.941	Oryzias_latipes_hsok
ENSCJAG00000000610	CMSS1	100	52.542	ENSOMEG00000012555	cmss1	100	53.979	Oryzias_melastigma
ENSCJAG00000000610	CMSS1	87	91.228	ENSOGAG00000002045	CMSS1	100	91.228	Otolemur_garnettii
ENSCJAG00000000610	CMSS1	98	88.031	ENSOARG00000017899	CMSS1	92	85.874	Ovis_aries
ENSCJAG00000000610	CMSS1	100	93.130	ENSPPAG00000038515	CMSS1	95	93.822	Pan_paniscus
ENSCJAG00000000610	CMSS1	100	91.071	ENSPPRG00000016767	CMSS1	100	91.071	Panthera_pardus
ENSCJAG00000000610	CMSS1	100	90.714	ENSPTIG00000018274	CMSS1	100	90.714	Panthera_tigris_altaica
ENSCJAG00000000610	CMSS1	100	93.214	ENSPTRG00000015157	CMSS1	100	93.878	Pan_troglodytes
ENSCJAG00000000610	CMSS1	100	90.076	ENSPANG00000019980	CMSS1	100	90.421	Papio_anubis
ENSCJAG00000000610	CMSS1	91	56.923	ENSPKIG00000012609	cmss1	97	57.143	Paramormyrops_kingsleyae
ENSCJAG00000000610	CMSS1	87	72.926	ENSPSIG00000003849	CMSS1	100	72.926	Pelodiscus_sinensis
ENSCJAG00000000610	CMSS1	84	57.965	ENSPMGG00000010286	cmss1	87	61.084	Periophthalmus_magnuspinnatus
ENSCJAG00000000610	CMSS1	100	81.495	ENSPEMG00000016384	Cmss1	100	81.495	Peromyscus_maniculatus_bairdii
ENSCJAG00000000610	CMSS1	78	52.451	ENSPMAG00000001146	cmss1	99	52.970	Petromyzon_marinus
ENSCJAG00000000610	CMSS1	99	73.664	ENSPCIG00000015656	CMSS1	100	73.106	Phascolarctos_cinereus
ENSCJAG00000000610	CMSS1	100	53.659	ENSPFOG00000016849	cmss1	100	53.659	Poecilia_formosa
ENSCJAG00000000610	CMSS1	100	53.310	ENSPLAG00000008323	cmss1	100	53.310	Poecilia_latipinna
ENSCJAG00000000610	CMSS1	100	50.658	ENSPMEG00000021020	cmss1	100	53.819	Poecilia_mexicana
ENSCJAG00000000610	CMSS1	89	60.000	ENSPREG00000007618	cmss1	82	60.000	Poecilia_reticulata
ENSCJAG00000000610	CMSS1	100	92.500	ENSPPYG00000013606	CMSS1	100	92.500	Pongo_abelii
ENSCJAG00000000610	CMSS1	100	90.357	ENSPCOG00000020035	CMSS1	100	90.357	Propithecus_coquereli
ENSCJAG00000000610	CMSS1	100	76.786	ENSPVAG00000017031	CMSS1	100	76.786	Pteropus_vampyrus
ENSCJAG00000000610	CMSS1	91	51.321	ENSPNYG00000013428	cmss1	97	51.698	Pundamilia_nyererei
ENSCJAG00000000610	CMSS1	100	49.495	ENSPNAG00000007912	cmss1	100	49.832	Pygocentrus_nattereri
ENSCJAG00000000610	CMSS1	99	80.769	ENSRNOG00000027888	Cmss1	100	80.843	Rattus_norvegicus
ENSCJAG00000000610	CMSS1	100	92.143	ENSRBIG00000037931	CMSS1	100	92.143	Rhinopithecus_bieti
ENSCJAG00000000610	CMSS1	100	92.143	ENSRROG00000042910	CMSS1	100	92.143	Rhinopithecus_roxellana
ENSCJAG00000000610	CMSS1	100	95.420	ENSSBOG00000030980	CMSS1	100	95.420	Saimiri_boliviensis_boliviensis
ENSCJAG00000000610	CMSS1	95	73.810	ENSSHAG00000009321	CMSS1	99	73.810	Sarcophilus_harrisii
ENSCJAG00000000610	CMSS1	100	55.782	ENSSFOG00015001509	cmss1	100	55.782	Scleropages_formosus
ENSCJAG00000000610	CMSS1	100	52.041	ENSSMAG00000001653	cmss1	100	52.577	Scophthalmus_maximus
ENSCJAG00000000610	CMSS1	100	52.397	ENSSDUG00000007719	cmss1	100	54.608	Seriola_dumerili
ENSCJAG00000000610	CMSS1	79	62.319	ENSSLDG00000012300	cmss1	98	48.945	Seriola_lalandi_dorsalis
ENSCJAG00000000610	CMSS1	100	73.310	ENSSARG00000003584	CMSS1	100	73.310	Sorex_araneus
ENSCJAG00000000610	CMSS1	86	71.239	ENSSPUG00000003865	CMSS1	100	71.239	Sphenodon_punctatus
ENSCJAG00000000610	CMSS1	79	63.592	ENSSPAG00000019182	cmss1	84	53.480	Stegastes_partitus
ENSCJAG00000000610	CMSS1	100	91.071	ENSSSCG00000011970	CMSS1	100	91.071	Sus_scrofa
ENSCJAG00000000610	CMSS1	87	65.939	ENSTGUG00000013635	CMSS1	100	65.939	Taeniopygia_guttata
ENSCJAG00000000610	CMSS1	100	50.000	ENSTRUG00000015265	cmss1	100	50.352	Takifugu_rubripes
ENSCJAG00000000610	CMSS1	77	55.941	ENSTNIG00000002880	cmss1	86	50.840	Tetraodon_nigroviridis
ENSCJAG00000000610	CMSS1	100	59.286	ENSTBEG00000016722	CMSS1	100	59.286	Tupaia_belangeri
ENSCJAG00000000610	CMSS1	100	86.429	ENSTTRG00000001562	CMSS1	100	86.429	Tursiops_truncatus
ENSCJAG00000000610	CMSS1	99	89.575	ENSUAMG00000024209	CMSS1	100	92.825	Ursus_americanus
ENSCJAG00000000610	CMSS1	99	89.575	ENSUMAG00000001983	CMSS1	99	89.189	Ursus_maritimus
ENSCJAG00000000610	CMSS1	100	66.786	ENSVPAG00000000263	CMSS1	100	66.786	Vicugna_pacos
ENSCJAG00000000610	CMSS1	77	93.564	ENSVVUG00000007776	-	80	93.564	Vulpes_vulpes
ENSCJAG00000000610	CMSS1	94	90.244	ENSVVUG00000021647	-	100	90.244	Vulpes_vulpes
ENSCJAG00000000610	CMSS1	100	55.674	ENSXETG00000011858	cmss1	100	56.028	Xenopus_tropicalis
ENSCJAG00000000610	CMSS1	79	62.500	ENSXCOG00000018724	cmss1	69	62.871	Xiphophorus_couchianus
ENSCJAG00000000610	CMSS1	79	62.500	ENSXMAG00000011243	cmss1	76	62.871	Xiphophorus_maculatus