EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000001820 (Gene tree)
Gene ID: 100395317
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 232779 bases
Position: chrNTIC01034389.1:61075549-61308327
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000022879	EST1	PF10374.9	7.7e-15	1	1
ENSCJAP00000022879	EST1_DNA_bind	PF10373.9	2.7e-60	1	1
ENSCJAP00000022879	PIN_4	PF13638.6	6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000024205	SMG6-201	4257	-	ENSCJAP00000022879	1418 (aa)	-	U3B8H2

Gene Model

Click here to download ENSCJAG00000001820's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000001820's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000001820	SMG6	100	94.785	ENSG00000070366	SMG6	100	98.551	Homo_sapiens
ENSCJAG00000001820	SMG6	71	59.689	ENSAPOG00000019448	smg6	74	55.148	Acanthochromis_polyacanthus
ENSCJAG00000001820	SMG6	100	93.159	ENSAMEG00000007632	SMG6	100	93.159	Ailuropoda_melanoleuca
ENSCJAG00000001820	SMG6	98	49.802	ENSACIG00000012997	smg6	98	50.263	Amphilophus_citrinellus
ENSCJAG00000001820	SMG6	71	59.578	ENSAOCG00000002630	smg6	74	55.391	Amphiprion_ocellaris
ENSCJAG00000001820	SMG6	71	59.670	ENSAPEG00000019101	smg6	74	55.425	Amphiprion_percula
ENSCJAG00000001820	SMG6	83	55.286	ENSATEG00000006483	smg6	73	54.969	Anabas_testudineus
ENSCJAG00000001820	SMG6	87	57.537	ENSACAG00000011783	SMG6	99	58.658	Anolis_carolinensis
ENSCJAG00000001820	SMG6	100	97.322	ENSANAG00000035760	SMG6	100	97.322	Aotus_nancymaae
ENSCJAG00000001820	SMG6	71	59.447	ENSACLG00000005288	smg6	80	55.199	Astatotilapia_calliptera
ENSCJAG00000001820	SMG6	68	62.866	ENSAMXG00000017326	smg6	99	50.446	Astyanax_mexicanus
ENSCJAG00000001820	SMG6	100	92.389	ENSBTAG00000000267	SMG6	100	92.389	Bos_taurus
ENSCJAG00000001820	SMG6	100	92.600	ENSCAFG00000019260	SMG6	100	92.600	Canis_familiaris
ENSCJAG00000001820	SMG6	100	92.600	ENSCAFG00020009770	SMG6	100	92.600	Canis_lupus_dingo
ENSCJAG00000001820	SMG6	100	92.389	ENSCHIG00000021998	SMG6	100	92.389	Capra_hircus
ENSCJAG00000001820	SMG6	100	93.164	ENSTSYG00000003406	SMG6	100	97.065	Carlito_syrichta
ENSCJAG00000001820	SMG6	98	76.978	ENSCAPG00000016197	SMG6	99	83.607	Cavia_aperea
ENSCJAG00000001820	SMG6	100	90.704	ENSCPOG00000014878	SMG6	98	93.506	Cavia_porcellus
ENSCJAG00000001820	SMG6	100	97.322	ENSCCAG00000035801	SMG6	100	97.322	Cebus_capucinus
ENSCJAG00000001820	SMG6	100	95.208	ENSCATG00000031956	SMG6	100	95.208	Cercocebus_atys
ENSCJAG00000001820	SMG6	100	91.966	ENSCLAG00000006748	SMG6	100	91.966	Chinchilla_lanigera
ENSCJAG00000001820	SMG6	100	95.560	ENSCSAG00000013800	SMG6	100	95.560	Chlorocebus_sabaeus
ENSCJAG00000001820	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSCJAG00000001820	SMG6	100	72.064	ENSCPBG00000020369	SMG6	100	72.689	Chrysemys_picta_bellii
ENSCJAG00000001820	SMG6	98	95.320	ENSCANG00000031764	SMG6	100	98.043	Colobus_angolensis_palliatus
ENSCJAG00000001820	SMG6	55	86.701	ENSCGRG00001019595	Smg6	98	86.701	Cricetulus_griseus_chok1gshd
ENSCJAG00000001820	SMG6	98	84.438	ENSCGRG00000007782	Smg6	100	84.582	Cricetulus_griseus_crigri
ENSCJAG00000001820	SMG6	86	58.394	ENSCSEG00000012757	smg6	92	52.268	Cynoglossus_semilaevis
ENSCJAG00000001820	SMG6	72	57.518	ENSCVAG00000012789	smg6	74	53.720	Cyprinodon_variegatus
ENSCJAG00000001820	SMG6	100	50.000	ENSDARG00000100481	smg6	100	50.706	Danio_rerio
ENSCJAG00000001820	SMG6	100	92.459	ENSDNOG00000048283	SMG6	100	92.459	Dasypus_novemcinctus
ENSCJAG00000001820	SMG6	100	88.772	ENSDORG00000016614	Smg6	94	98.198	Dipodomys_ordii
ENSCJAG00000001820	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSCJAG00000001820	SMG6	73	49.806	ENSEBUG00000005059	smg6	73	48.976	Eptatretus_burgeri
ENSCJAG00000001820	SMG6	99	93.366	ENSEASG00005009318	SMG6	99	93.366	Equus_asinus_asinus
ENSCJAG00000001820	SMG6	99	93.084	ENSECAG00000006519	SMG6	99	93.084	Equus_caballus
ENSCJAG00000001820	SMG6	100	81.735	ENSEEUG00000003493	SMG6	100	81.735	Erinaceus_europaeus
ENSCJAG00000001820	SMG6	71	60.463	ENSELUG00000005934	smg6	69	55.513	Esox_lucius
ENSCJAG00000001820	SMG6	100	93.658	ENSFCAG00000028817	SMG6	100	93.658	Felis_catus
ENSCJAG00000001820	SMG6	98	71.439	ENSFALG00000006538	SMG6	100	71.510	Ficedula_albicollis
ENSCJAG00000001820	SMG6	100	91.825	ENSFDAG00000015106	SMG6	100	91.825	Fukomys_damarensis
ENSCJAG00000001820	SMG6	83	52.840	ENSFHEG00000013282	smg6	75	53.344	Fundulus_heteroclitus
ENSCJAG00000001820	SMG6	53	69.159	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSCJAG00000001820	SMG6	100	71.716	ENSGALG00000003108	SMG6	98	71.855	Gallus_gallus
ENSCJAG00000001820	SMG6	83	53.840	ENSGAFG00000000379	smg6	74	54.283	Gambusia_affinis
ENSCJAG00000001820	SMG6	91	53.886	ENSGACG00000020521	smg6	100	53.778	Gasterosteus_aculeatus
ENSCJAG00000001820	SMG6	98	71.642	ENSGAGG00000025617	SMG6	100	72.281	Gopherus_agassizii
ENSCJAG00000001820	SMG6	100	95.772	ENSGGOG00000017156	SMG6	100	95.772	Gorilla_gorilla
ENSCJAG00000001820	SMG6	83	54.723	ENSHBUG00000021311	smg6	74	55.564	Haplochromis_burtoni
ENSCJAG00000001820	SMG6	100	91.766	ENSHGLG00000012882	SMG6	100	91.766	Heterocephalus_glaber_female
ENSCJAG00000001820	SMG6	100	91.837	ENSHGLG00100017815	SMG6	100	91.837	Heterocephalus_glaber_male
ENSCJAG00000001820	SMG6	71	59.160	ENSHCOG00000008761	smg6	97	53.852	Hippocampus_comes
ENSCJAG00000001820	SMG6	83	54.953	ENSIPUG00000012493	smg6	75	54.917	Ictalurus_punctatus
ENSCJAG00000001820	SMG6	100	93.587	ENSSTOG00000028127	SMG6	100	93.587	Ictidomys_tridecemlineatus
ENSCJAG00000001820	SMG6	79	88.314	ENSJJAG00000015367	Smg6	95	86.395	Jaculus_jaculus
ENSCJAG00000001820	SMG6	73	59.226	ENSKMAG00000000279	smg6	76	53.982	Kryptolebias_marmoratus
ENSCJAG00000001820	SMG6	55	58.303	ENSLACG00000000806	-	98	58.549	Latimeria_chalumnae
ENSCJAG00000001820	SMG6	72	66.476	ENSLOCG00000006448	smg6	99	54.832	Lepisosteus_oculatus
ENSCJAG00000001820	SMG6	100	92.178	ENSLAFG00000001261	SMG6	100	92.178	Loxodonta_africana
ENSCJAG00000001820	SMG6	100	95.490	ENSMFAG00000003394	SMG6	100	95.490	Macaca_fascicularis
ENSCJAG00000001820	SMG6	100	95.419	ENSMMUG00000023161	SMG6	100	95.419	Macaca_mulatta
ENSCJAG00000001820	SMG6	100	90.513	ENSMNEG00000044592	SMG6	100	90.513	Macaca_nemestrina
ENSCJAG00000001820	SMG6	93	98.120	ENSMLEG00000029353	SMG6	100	98.120	Mandrillus_leucophaeus
ENSCJAG00000001820	SMG6	72	61.035	ENSMAMG00000020119	smg6	79	56.495	Mastacembelus_armatus
ENSCJAG00000001820	SMG6	71	59.447	ENSMZEG00005024736	smg6	74	55.451	Maylandia_zebra
ENSCJAG00000001820	SMG6	73	65.941	ENSMGAG00000005401	-	99	65.941	Meleagris_gallopavo
ENSCJAG00000001820	SMG6	100	94.715	ENSMICG00000012913	SMG6	100	94.715	Microcebus_murinus
ENSCJAG00000001820	SMG6	100	47.815	ENSMMOG00000010883	smg6	100	48.564	Mola_mola
ENSCJAG00000001820	SMG6	100	85.795	ENSMODG00000010622	SMG6	100	85.795	Monodelphis_domestica
ENSCJAG00000001820	SMG6	83	54.821	ENSMALG00000001106	smg6	73	55.322	Monopterus_albus
ENSCJAG00000001820	SMG6	100	91.121	MGP_CAROLIEiJ_G0016729	Smg6	100	91.121	Mus_caroli
ENSCJAG00000001820	SMG6	100	91.121	ENSMUSG00000038290	Smg6	100	91.121	Mus_musculus
ENSCJAG00000001820	SMG6	100	90.627	MGP_PahariEiJ_G0017866	Smg6	96	94.760	Mus_pahari
ENSCJAG00000001820	SMG6	100	91.050	MGP_SPRETEiJ_G0017572	Smg6	100	91.050	Mus_spretus
ENSCJAG00000001820	SMG6	100	92.671	ENSMPUG00000013046	SMG6	100	92.671	Mustela_putorius_furo
ENSCJAG00000001820	SMG6	100	92.600	ENSMLUG00000005739	SMG6	100	92.600	Myotis_lucifugus
ENSCJAG00000001820	SMG6	98	90.641	ENSNGAG00000007287	Smg6	100	90.641	Nannospalax_galili
ENSCJAG00000001820	SMG6	83	53.888	ENSNBRG00000009511	smg6	81	54.910	Neolamprologus_brichardi
ENSCJAG00000001820	SMG6	98	94.978	ENSNLEG00000017171	SMG6	100	98.239	Nomascus_leucogenys
ENSCJAG00000001820	SMG6	98	81.609	ENSMEUG00000015804	SMG6	100	81.609	Notamacropus_eugenii
ENSCJAG00000001820	SMG6	62	89.545	ENSOPRG00000000579	SMG6	91	89.545	Ochotona_princeps
ENSCJAG00000001820	SMG6	100	85.644	ENSODEG00000008038	SMG6	100	85.644	Octodon_degus
ENSCJAG00000001820	SMG6	100	51.275	ENSONIG00000005594	smg6	100	51.939	Oreochromis_niloticus
ENSCJAG00000001820	SMG6	100	92.540	ENSOCUG00000013018	SMG6	100	92.681	Oryctolagus_cuniculus
ENSCJAG00000001820	SMG6	83	53.895	ENSORLG00000003317	smg6	74	54.154	Oryzias_latipes
ENSCJAG00000001820	SMG6	87	52.327	ENSORLG00020015343	smg6	74	54.396	Oryzias_latipes_hni
ENSCJAG00000001820	SMG6	87	52.434	ENSORLG00015020454	smg6	74	54.346	Oryzias_latipes_hsok
ENSCJAG00000001820	SMG6	83	53.695	ENSOMEG00000010838	smg6	75	54.438	Oryzias_melastigma
ENSCJAG00000001820	SMG6	100	93.662	ENSOGAG00000004483	SMG6	100	93.662	Otolemur_garnettii
ENSCJAG00000001820	SMG6	100	90.775	ENSOARG00000015076	SMG6	100	92.347	Ovis_aries
ENSCJAG00000001820	SMG6	100	95.772	ENSPPAG00000043296	SMG6	100	95.772	Pan_paniscus
ENSCJAG00000001820	SMG6	100	93.728	ENSPPRG00000014581	SMG6	100	93.728	Panthera_pardus
ENSCJAG00000001820	SMG6	98	93.791	ENSPTIG00000008925	SMG6	100	97.847	Panthera_tigris_altaica
ENSCJAG00000001820	SMG6	100	95.772	ENSPTRG00000008544	SMG6	100	98.239	Pan_troglodytes
ENSCJAG00000001820	SMG6	100	95.490	ENSPANG00000024588	SMG6	100	95.490	Papio_anubis
ENSCJAG00000001820	SMG6	89	70.602	ENSPSIG00000006660	SMG6	96	70.680	Pelodiscus_sinensis
ENSCJAG00000001820	SMG6	98	60.742	ENSPMGG00000000844	smg6	100	60.742	Periophthalmus_magnuspinnatus
ENSCJAG00000001820	SMG6	100	91.966	ENSPEMG00000020707	Smg6	98	94.760	Peromyscus_maniculatus_bairdii
ENSCJAG00000001820	SMG6	100	51.643	ENSPFOG00000012035	smg6	100	51.572	Poecilia_formosa
ENSCJAG00000001820	SMG6	77	56.641	ENSPLAG00000017660	smg6	74	54.183	Poecilia_latipinna
ENSCJAG00000001820	SMG6	77	56.667	ENSPMEG00000000258	smg6	74	54.496	Poecilia_mexicana
ENSCJAG00000001820	SMG6	83	54.474	ENSPREG00000010066	smg6	74	54.510	Poecilia_reticulata
ENSCJAG00000001820	SMG6	100	90.295	ENSPPYG00000007790	SMG6	100	90.295	Pongo_abelii
ENSCJAG00000001820	SMG6	100	88.161	ENSPCAG00000000552	SMG6	100	88.161	Procavia_capensis
ENSCJAG00000001820	SMG6	100	94.574	ENSPCOG00000020925	SMG6	100	94.574	Propithecus_coquereli
ENSCJAG00000001820	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSCJAG00000001820	SMG6	83	55.547	ENSPNYG00000024151	smg6	79	57.409	Pundamilia_nyererei
ENSCJAG00000001820	SMG6	85	51.797	ENSPNAG00000015480	smg6	100	51.708	Pygocentrus_nattereri
ENSCJAG00000001820	SMG6	100	91.473	ENSRNOG00000003041	Smg6	96	95.894	Rattus_norvegicus
ENSCJAG00000001820	SMG6	100	95.490	ENSRBIG00000024746	SMG6	100	95.490	Rhinopithecus_bieti
ENSCJAG00000001820	SMG6	100	95.560	ENSRROG00000030423	SMG6	100	97.652	Rhinopithecus_roxellana
ENSCJAG00000001820	SMG6	100	97.393	ENSSBOG00000022518	SMG6	100	95.631	Saimiri_boliviensis_boliviensis
ENSCJAG00000001820	SMG6	98	84.362	ENSSHAG00000010045	SMG6	98	84.362	Sarcophilus_harrisii
ENSCJAG00000001820	SMG6	72	61.816	ENSSFOG00015005436	smg6	75	55.007	Scleropages_formosus
ENSCJAG00000001820	SMG6	83	55.116	ENSSMAG00000019777	smg6	73	55.066	Scophthalmus_maximus
ENSCJAG00000001820	SMG6	83	55.078	ENSSDUG00000016412	smg6	74	55.148	Seriola_dumerili
ENSCJAG00000001820	SMG6	80	54.120	ENSSLDG00000020747	smg6	77	54.295	Seriola_lalandi_dorsalis
ENSCJAG00000001820	SMG6	99	69.805	ENSSPUG00000007152	SMG6	99	69.944	Sphenodon_punctatus
ENSCJAG00000001820	SMG6	71	59.266	ENSSPAG00000015633	smg6	74	54.867	Stegastes_partitus
ENSCJAG00000001820	SMG6	100	91.972	ENSSSCG00000017826	SMG6	100	91.972	Sus_scrofa
ENSCJAG00000001820	SMG6	100	72.020	ENSTGUG00000005836	SMG6	100	72.160	Taeniopygia_guttata
ENSCJAG00000001820	SMG6	83	54.880	ENSTRUG00000000358	smg6	81	55.672	Takifugu_rubripes
ENSCJAG00000001820	SMG6	100	50.165	ENSTNIG00000016164	smg6	100	50.823	Tetraodon_nigroviridis
ENSCJAG00000001820	SMG6	100	89.077	ENSTBEG00000011424	SMG6	100	89.077	Tupaia_belangeri
ENSCJAG00000001820	SMG6	91	91.667	ENSTTRG00000001175	SMG6	91	91.667	Tursiops_truncatus
ENSCJAG00000001820	SMG6	100	92.963	ENSUAMG00000025152	SMG6	100	93.006	Ursus_americanus
ENSCJAG00000001820	SMG6	98	93.353	ENSUMAG00000009306	SMG6	100	93.353	Ursus_maritimus
ENSCJAG00000001820	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSCJAG00000001820	SMG6	100	92.389	ENSVVUG00000021727	SMG6	100	92.389	Vulpes_vulpes
ENSCJAG00000001820	SMG6	98	59.450	ENSXETG00000023799	SMG6	100	59.408	Xenopus_tropicalis
ENSCJAG00000001820	SMG6	72	59.981	ENSXCOG00000009867	smg6	74	55.219	Xiphophorus_couchianus
ENSCJAG00000001820	SMG6	83	54.460	ENSXMAG00000010321	smg6	74	54.439	Xiphophorus_maculatus