EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000001843 (Gene tree)
Gene ID: 100401763
Gene Symbol: HFM1
Alias: FLJ36760|FLJ39011|MER3|SEC63D1
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 122607 bases
Position: chrNTIC01036611.1:29798442-29921048
Accession: 20193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000049502	ResIII	PF04851.15	1.3e-11	1	1
ENSCJAP00000049502	DEAD	PF00270.29	6.3e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000063585	HFM1-201	4302	-	ENSCJAP00000049502	1433 (aa)	-	F6XU04
ENSCJAT00000059072	HFM1-202	3311	-	ENSCJAP00000044605	876 (aa)	-	F7ECQ5

Gene Model

Click here to download ENSCJAG00000001843's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000001843's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000001843	HFM1	58	31.824	ENSCJAG00000007514	SNRNP200	75	31.824
ENSCJAG00000001843	HFM1	52	37.636	ENSCJAG00000001507	ASCC3	68	37.636

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000001843	HFM1	100	93.868	ENSG00000162669	HFM1	100	93.868	Homo_sapiens
ENSCJAG00000001843	HFM1	64	64.411	ENSAPOG00000005304	hfm1	100	64.411	Acanthochromis_polyacanthus
ENSCJAG00000001843	HFM1	100	85.129	ENSAMEG00000000432	HFM1	100	85.129	Ailuropoda_melanoleuca
ENSCJAG00000001843	HFM1	71	60.117	ENSACIG00000021553	hfm1	91	60.117	Amphilophus_citrinellus
ENSCJAG00000001843	HFM1	64	65.380	ENSAOCG00000022839	hfm1	100	65.380	Amphiprion_ocellaris
ENSCJAG00000001843	HFM1	64	65.029	ENSAPEG00000014316	hfm1	100	65.029	Amphiprion_percula
ENSCJAG00000001843	HFM1	67	64.256	ENSATEG00000019181	hfm1	80	63.388	Anabas_testudineus
ENSCJAG00000001843	HFM1	100	59.795	ENSAPLG00000013639	HFM1	100	59.795	Anas_platyrhynchos
ENSCJAG00000001843	HFM1	100	94.355	ENSANAG00000029513	HFM1	100	94.355	Aotus_nancymaae
ENSCJAG00000001843	HFM1	65	63.519	ENSACLG00000009033	hfm1	98	64.387	Astatotilapia_calliptera
ENSCJAG00000001843	HFM1	92	52.409	ENSAMXG00000006108	hfm1	89	52.377	Astyanax_mexicanus
ENSCJAG00000001843	HFM1	100	83.819	ENSBTAG00000020856	HFM1	100	83.819	Bos_taurus
ENSCJAG00000001843	HFM1	100	84.573	ENSCAFG00000020187	HFM1	100	84.573	Canis_familiaris
ENSCJAG00000001843	HFM1	100	84.920	ENSTSYG00000014250	HFM1	100	84.920	Carlito_syrichta
ENSCJAG00000001843	HFM1	99	77.561	ENSCPOG00000007421	HFM1	99	77.561	Cavia_porcellus
ENSCJAG00000001843	HFM1	100	96.999	ENSCCAG00000033206	HFM1	100	96.999	Cebus_capucinus
ENSCJAG00000001843	HFM1	100	93.240	ENSCATG00000030987	HFM1	100	93.240	Cercocebus_atys
ENSCJAG00000001843	HFM1	100	79.217	ENSCLAG00000005173	HFM1	99	79.217	Chinchilla_lanigera
ENSCJAG00000001843	HFM1	68	94.737	ENSCHOG00000011824	-	77	94.737	Choloepus_hoffmanni
ENSCJAG00000001843	HFM1	100	73.010	ENSCGRG00001016995	Hfm1	100	73.010	Cricetulus_griseus_chok1gshd
ENSCJAG00000001843	HFM1	100	76.928	ENSCGRG00000017181	Hfm1	100	76.928	Cricetulus_griseus_crigri
ENSCJAG00000001843	HFM1	71	59.750	ENSCSEG00000017659	hfm1	93	60.038	Cynoglossus_semilaevis
ENSCJAG00000001843	HFM1	50	68.531	ENSCVAG00000005075	hfm1	86	68.531	Cyprinodon_variegatus
ENSCJAG00000001843	HFM1	79	54.108	ENSDARG00000104288	hfm1	99	54.108	Danio_rerio
ENSCJAG00000001843	HFM1	100	79.852	ENSDNOG00000004776	HFM1	100	79.852	Dasypus_novemcinctus
ENSCJAG00000001843	HFM1	100	77.747	ENSDORG00000014661	Hfm1	100	77.747	Dipodomys_ordii
ENSCJAG00000001843	HFM1	71	84.798	ENSEASG00005015424	HFM1	97	84.798	Equus_asinus_asinus
ENSCJAG00000001843	HFM1	100	82.963	ENSECAG00000024039	HFM1	100	82.963	Equus_caballus
ENSCJAG00000001843	HFM1	64	66.319	ENSELUG00000018944	hfm1	99	66.319	Esox_lucius
ENSCJAG00000001843	HFM1	100	84.583	ENSFCAG00000029116	HFM1	100	84.583	Felis_catus
ENSCJAG00000001843	HFM1	100	60.575	ENSFALG00000001781	HFM1	100	60.771	Ficedula_albicollis
ENSCJAG00000001843	HFM1	100	78.039	ENSFDAG00000020816	HFM1	100	78.039	Fukomys_damarensis
ENSCJAG00000001843	HFM1	66	59.834	ENSGMOG00000017436	hfm1	100	59.834	Gadus_morhua
ENSCJAG00000001843	HFM1	71	61.808	ENSGAFG00000018093	hfm1	92	66.829	Gambusia_affinis
ENSCJAG00000001843	HFM1	67	61.515	ENSGACG00000015686	hfm1	100	61.515	Gasterosteus_aculeatus
ENSCJAG00000001843	HFM1	100	93.659	ENSGGOG00000038524	HFM1	100	93.659	Gorilla_gorilla
ENSCJAG00000001843	HFM1	65	64.592	ENSHBUG00000007309	hfm1	96	59.676	Haplochromis_burtoni
ENSCJAG00000001843	HFM1	57	63.848	ENSHCOG00000019632	hfm1	97	63.848	Hippocampus_comes
ENSCJAG00000001843	HFM1	66	64.557	ENSIPUG00000017020	hfm1	92	65.476	Ictalurus_punctatus
ENSCJAG00000001843	HFM1	100	77.244	ENSJJAG00000017198	Hfm1	100	77.244	Jaculus_jaculus
ENSCJAG00000001843	HFM1	62	63.082	ENSKMAG00000002282	hfm1	90	63.152	Kryptolebias_marmoratus
ENSCJAG00000001843	HFM1	71	60.314	ENSLBEG00000006759	hfm1	98	64.865	Labrus_bergylta
ENSCJAG00000001843	HFM1	67	70.868	ENSLACG00000010698	HFM1	99	67.077	Latimeria_chalumnae
ENSCJAG00000001843	HFM1	71	64.519	ENSLOCG00000004931	hfm1	95	64.615	Lepisosteus_oculatus
ENSCJAG00000001843	HFM1	52	89.098	ENSLAFG00000015903	-	99	89.098	Loxodonta_africana
ENSCJAG00000001843	HFM1	100	89.729	ENSMFAG00000003649	HFM1	100	89.729	Macaca_fascicularis
ENSCJAG00000001843	HFM1	100	92.683	ENSMMUG00000006819	HFM1	100	92.683	Macaca_mulatta
ENSCJAG00000001843	HFM1	58	66.184	ENSMAMG00000004623	hfm1	97	66.184	Mastacembelus_armatus
ENSCJAG00000001843	HFM1	65	63.519	ENSMZEG00005004679	hfm1	98	64.387	Maylandia_zebra
ENSCJAG00000001843	HFM1	55	76.913	ENSMGAG00000008437	HFM1	98	76.913	Meleagris_gallopavo
ENSCJAG00000001843	HFM1	100	76.875	ENSMAUG00000018858	Hfm1	100	76.875	Mesocricetus_auratus
ENSCJAG00000001843	HFM1	100	86.379	ENSMICG00000037935	HFM1	100	86.379	Microcebus_murinus
ENSCJAG00000001843	HFM1	100	75.174	ENSMOCG00000014812	Hfm1	100	75.174	Microtus_ochrogaster
ENSCJAG00000001843	HFM1	62	63.453	ENSMMOG00000006148	hfm1	96	63.879	Mola_mola
ENSCJAG00000001843	HFM1	65	64.026	ENSMALG00000002401	hfm1	96	65.070	Monopterus_albus
ENSCJAG00000001843	HFM1	100	58.716	MGP_CAROLIEiJ_G0027496	Hfm1	97	69.845	Mus_caroli
ENSCJAG00000001843	HFM1	100	75.452	ENSMUSG00000043410	Hfm1	100	75.452	Mus_musculus
ENSCJAG00000001843	HFM1	100	75.243	MGP_PahariEiJ_G0017268	Hfm1	100	75.243	Mus_pahari
ENSCJAG00000001843	HFM1	100	75.313	MGP_SPRETEiJ_G0028495	Hfm1	100	75.313	Mus_spretus
ENSCJAG00000001843	HFM1	100	81.549	ENSMPUG00000004594	HFM1	100	81.549	Mustela_putorius_furo
ENSCJAG00000001843	HFM1	100	82.165	ENSMLUG00000010200	HFM1	100	82.165	Myotis_lucifugus
ENSCJAG00000001843	HFM1	65	60.730	ENSNBRG00000002910	hfm1	97	65.333	Neolamprologus_brichardi
ENSCJAG00000001843	HFM1	100	89.214	ENSNLEG00000010285	HFM1	100	89.214	Nomascus_leucogenys
ENSCJAG00000001843	HFM1	84	66.667	ENSMEUG00000015788	HFM1	84	66.667	Notamacropus_eugenii
ENSCJAG00000001843	HFM1	84	77.847	ENSOPRG00000013916	HFM1	84	77.847	Ochotona_princeps
ENSCJAG00000001843	HFM1	71	61.605	ENSONIG00000010590	hfm1	99	61.568	Oreochromis_niloticus
ENSCJAG00000001843	HFM1	57	65.560	ENSORLG00000026844	hfm1	99	65.560	Oryzias_latipes
ENSCJAG00000001843	HFM1	67	56.707	ENSORLG00020002951	hfm1	77	56.707	Oryzias_latipes_hni
ENSCJAG00000001843	HFM1	72	59.120	ENSOMEG00000016474	hfm1	75	59.120	Oryzias_melastigma
ENSCJAG00000001843	HFM1	85	86.889	ENSOGAG00000032369	HFM1	100	86.889	Otolemur_garnettii
ENSCJAG00000001843	HFM1	100	83.969	ENSOARG00000015812	HFM1	100	83.969	Ovis_aries
ENSCJAG00000001843	HFM1	92	94.260	ENSPPAG00000024582	HFM1	100	94.260	Pan_paniscus
ENSCJAG00000001843	HFM1	100	84.583	ENSPPRG00000003270	HFM1	100	84.583	Panthera_pardus
ENSCJAG00000001843	HFM1	100	84.514	ENSPTIG00000018881	HFM1	100	84.514	Panthera_tigris_altaica
ENSCJAG00000001843	HFM1	100	93.868	ENSPTRG00000000948	HFM1	100	93.868	Pan_troglodytes
ENSCJAG00000001843	HFM1	100	93.031	ENSPANG00000009838	HFM1	100	93.031	Papio_anubis
ENSCJAG00000001843	HFM1	64	65.498	ENSPKIG00000003810	hfm1	95	67.394	Paramormyrops_kingsleyae
ENSCJAG00000001843	HFM1	58	65.659	ENSPMGG00000011059	hfm1	100	65.659	Periophthalmus_magnuspinnatus
ENSCJAG00000001843	HFM1	100	78.373	ENSPEMG00000022852	Hfm1	100	78.373	Peromyscus_maniculatus_bairdii
ENSCJAG00000001843	HFM1	100	66.511	ENSPCIG00000014233	HFM1	100	66.511	Phascolarctos_cinereus
ENSCJAG00000001843	HFM1	70	61.656	ENSPFOG00000017194	hfm1	99	61.656	Poecilia_formosa
ENSCJAG00000001843	HFM1	71	63.337	ENSPLAG00000000571	hfm1	92	63.337	Poecilia_latipinna
ENSCJAG00000001843	HFM1	71	63.566	ENSPMEG00000019475	hfm1	92	63.566	Poecilia_mexicana
ENSCJAG00000001843	HFM1	70	62.956	ENSPREG00000007803	hfm1	92	66.545	Poecilia_reticulata
ENSCJAG00000001843	HFM1	100	93.659	ENSPPYG00000001163	HFM1	100	93.659	Pongo_abelii
ENSCJAG00000001843	HFM1	74	79.730	ENSPCAG00000004289	-	74	79.730	Procavia_capensis
ENSCJAG00000001843	HFM1	100	76.200	ENSPVAG00000009713	HFM1	100	76.200	Pteropus_vampyrus
ENSCJAG00000001843	HFM1	65	63.305	ENSPNYG00000001795	hfm1	98	64.269	Pundamilia_nyererei
ENSCJAG00000001843	HFM1	59	67.258	ENSPNAG00000010865	hfm1	84	67.258	Pygocentrus_nattereri
ENSCJAG00000001843	HFM1	100	74.826	ENSRNOG00000023299	Hfm1	100	74.826	Rattus_norvegicus
ENSCJAG00000001843	HFM1	100	93.101	ENSRROG00000045569	HFM1	100	93.101	Rhinopithecus_roxellana
ENSCJAG00000001843	HFM1	100	93.929	ENSSBOG00000027456	HFM1	100	93.929	Saimiri_boliviensis_boliviensis
ENSCJAG00000001843	HFM1	60	71.280	ENSSHAG00000014616	-	98	71.280	Sarcophilus_harrisii
ENSCJAG00000001843	HFM1	86	55.906	ENSSFOG00015020129	hfm1	83	55.984	Scleropages_formosus
ENSCJAG00000001843	HFM1	62	64.358	ENSSMAG00000006907	hfm1	87	64.358	Scophthalmus_maximus
ENSCJAG00000001843	HFM1	64	63.977	ENSSDUG00000011424	hfm1	100	63.977	Seriola_dumerili
ENSCJAG00000001843	HFM1	65	64.228	ENSSLDG00000016386	hfm1	100	64.228	Seriola_lalandi_dorsalis
ENSCJAG00000001843	HFM1	62	65.947	ENSSPAG00000001023	hfm1	100	65.947	Stegastes_partitus
ENSCJAG00000001843	HFM1	100	80.337	ENSSSCG00000006912	HFM1	100	80.337	Sus_scrofa
ENSCJAG00000001843	HFM1	67	75.026	ENSTGUG00000006172	HFM1	100	75.026	Taeniopygia_guttata
ENSCJAG00000001843	HFM1	100	80.208	ENSTTRG00000013933	HFM1	100	80.208	Tursiops_truncatus
ENSCJAG00000001843	HFM1	93	82.745	ENSVPAG00000011331	HFM1	93	82.745	Vicugna_pacos
ENSCJAG00000001843	HFM1	71	82.285	ENSVVUG00000020760	HFM1	99	82.285	Vulpes_vulpes
ENSCJAG00000001843	HFM1	58	66.507	ENSXMAG00000004178	hfm1	100	66.507	Xiphophorus_maculatus