EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • Orthologs
Description
Ensembl ID
ENSCJAG00000001848 (Gene tree)
Gene ID
100402829
Gene Symbol
RPA1
Alias
HSSB|REPA1|RF-A|RP-A|RPA70
Full Name
replication protein A1
Gene Type
protein_coding
Species
Callithrix_jacchus
Status
putative
Strand
Minus strand
Length
56267 bases
Position
chrNTIC01034389.1:61483354-61539620
Accession
100402829
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCJAP00000003336tRNA_anti-codonPF01336.253.5e-1111
ENSCJAP00000003334tRNA_anti-codonPF01336.253.6e-1111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCJAT00000003520RPA1-2021887-ENSCJAP00000003336628 (aa)-F7EMF9
ENSCJAT00000003517RPA1-2011851-ENSCJAP00000003334616 (aa)XP_002747872F7EMG6
Gene Model
Click here to download ENSCJAG00000001848's gene model file
Pathways
Pathway IDPathway NameSource
cjc03030DNA replicationKEGG
cjc03420Nucleotide excision repairKEGG
cjc03430Mismatch repairKEGG
cjc03440Homologous recombinationKEGG
cjc03460Fanconi anemia pathwayKEGG
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCJAG00000001848RPA19063.387ENSAPOG00000019409RPA18063.387Acanthochromis_polyacanthus
ENSCJAG00000001848RPA19962.092ENSAPOG00000011658rpa19962.759Acanthochromis_polyacanthus
ENSCJAG00000001848RPA19888.468ENSAMEG00000007706RPA19888.779Ailuropoda_melanoleuca
ENSCJAG00000001848RPA19558.446ENSACIG00000012881RPA19958.574Amphilophus_citrinellus
ENSCJAG00000001848RPA19656.537ENSACIG00000007277rpa19956.197Amphilophus_citrinellus
ENSCJAG00000001848RPA19954.908ENSAOCG00000009003RPA110054.518Amphiprion_ocellaris
ENSCJAG00000001848RPA19962.215ENSAOCG00000023376rpa19962.522Amphiprion_ocellaris
ENSCJAG00000001848RPA19953.673ENSAPEG00000019132RPA19753.870Amphiprion_percula
ENSCJAG00000001848RPA19962.215ENSAPEG00000008634rpa19962.522Amphiprion_percula
ENSCJAG00000001848RPA19954.587ENSATEG00000006443RPA110053.517Anabas_testudineus
ENSCJAG00000001848RPA19563.122ENSATEG00000022024rpa19962.779Anabas_testudineus
ENSCJAG00000001848RPA19865.192ENSAPLG00000012442RPA110065.044Anas_platyrhynchos
ENSCJAG00000001848RPA19962.916ENSACAG00000014490RPA19963.768Anolis_carolinensis
ENSCJAG00000001848RPA19897.512ENSANAG00000023456RPA110097.512Aotus_nancymaae
ENSCJAG00000001848RPA19362.783ENSACLG00000006640rpa19962.435Astatotilapia_calliptera
ENSCJAG00000001848RPA19957.524ENSACLG00000005223RPA19956.740Astatotilapia_calliptera
ENSCJAG00000001848RPA19961.789ENSAMXG00000008418rpa19961.688Astyanax_mexicanus
ENSCJAG00000001848RPA110090.097ENSBTAG00000009711RPA110090.097Bos_taurus
ENSCJAG00000001848RPA110088.636ENSCAFG00000019249RPA110088.636Canis_familiaris
ENSCJAG00000001848RPA110088.636ENSCAFG00020009847RPA110088.636Canis_lupus_dingo
ENSCJAG00000001848RPA110090.097ENSCHIG00000026308RPA110090.097Capra_hircus
ENSCJAG00000001848RPA110090.600ENSTSYG00000003482-10090.438Carlito_syrichta
ENSCJAG00000001848RPA110087.825ENSCPOG00000000035RPA110087.825Cavia_porcellus
ENSCJAG00000001848RPA110086.710ENSCCAG00000010981RPA110086.710Cebus_capucinus
ENSCJAG00000001848RPA19988.599ENSCLAG00000005185-9988.599Chinchilla_lanigera
ENSCJAG00000001848RPA110083.442ENSCLAG00000015045-10083.442Chinchilla_lanigera
ENSCJAG00000001848RPA110082.172ENSCSAG00000013833RPA110082.172Chlorocebus_sabaeus
ENSCJAG00000001848RPA17191.572ENSCHOG00000009454-10091.572Choloepus_hoffmanni
ENSCJAG00000001848RPA19586.565ENSCHOG00000013540-10086.565Choloepus_hoffmanni
ENSCJAG00000001848RPA19976.221ENSCPBG00000020377RPA19976.450Chrysemys_picta_bellii
ENSCJAG00000001848RPA19941.883ENSCING00000023482-9841.914Ciona_intestinalis
ENSCJAG00000001848RPA19889.735ENSCANG00000030911RPA19989.735Colobus_angolensis_palliatus
ENSCJAG00000001848RPA19987.540ENSCGRG00001008197Rpa19986.570Cricetulus_griseus_chok1gshd
ENSCJAG00000001848RPA18186.391ENSCGRG00000000582Rpa19985.207Cricetulus_griseus_crigri
ENSCJAG00000001848RPA19960.033ENSCSEG00000013066rpa19960.033Cynoglossus_semilaevis
ENSCJAG00000001848RPA19950.786ENSCSEG00000012726RPA19952.560Cynoglossus_semilaevis
ENSCJAG00000001848RPA19962.745ENSCVAG00000019431rpa19963.287Cyprinodon_variegatus
ENSCJAG00000001848RPA19653.303ENSCVAG00000013446-9653.005Cyprinodon_variegatus
ENSCJAG00000001848RPA19962.764ENSDARG00000003938rpa19962.013Danio_rerio
ENSCJAG00000001848RPA19888.779ENSDNOG00000017218RPA19888.779Dasypus_novemcinctus
ENSCJAG00000001848RPA110089.286ENSDORG00000006199Rpa19989.577Dipodomys_ordii
ENSCJAG00000001848RPA19942.649FBgn0010173RpA-709842.326Drosophila_melanogaster
ENSCJAG00000001848RPA18384.375ENSETEG00000017608RPA18284.375Echinops_telfairi
ENSCJAG00000001848RPA19890.381ENSEASG00005009372RPA110088.530Equus_asinus_asinus
ENSCJAG00000001848RPA110090.584ENSECAG00000023886RPA110090.584Equus_caballus
ENSCJAG00000001848RPA16889.762ENSEEUG00000002186-6889.762Erinaceus_europaeus
ENSCJAG00000001848RPA18857.248ENSELUG00000006136RPA19956.697Esox_lucius
ENSCJAG00000001848RPA19960.552ENSELUG00000021071rpa19960.582Esox_lucius
ENSCJAG00000001848RPA110087.358ENSFCAG00000006306RPA19987.358Felis_catus
ENSCJAG00000001848RPA110073.829ENSFALG00000006575RPA19973.667Ficedula_albicollis
ENSCJAG00000001848RPA19988.436ENSFDAG00000007720RPA19988.436Fukomys_damarensis
ENSCJAG00000001848RPA19960.855ENSFHEG00000003580rpa19661.121Fundulus_heteroclitus
ENSCJAG00000001848RPA19958.795ENSGMOG00000010382rpa19958.795Gadus_morhua
ENSCJAG00000001848RPA110073.906ENSGALG00000003072RPA19973.906Gallus_gallus
ENSCJAG00000001848RPA19962.273ENSGAFG00000012916rpa19961.576Gambusia_affinis
ENSCJAG00000001848RPA19954.160ENSGAFG00000020953RPA19953.951Gambusia_affinis
ENSCJAG00000001848RPA19960.163ENSGACG00000010856rpa19959.446Gasterosteus_aculeatus
ENSCJAG00000001848RPA19976.221ENSGAGG00000013611RPA19975.570Gopherus_agassizii
ENSCJAG00000001848RPA110090.260ENSGGOG00000014186RPA110090.260Gorilla_gorilla
ENSCJAG00000001848RPA19654.077ENSHBUG00000009348RPA19953.667Haplochromis_burtoni
ENSCJAG00000001848RPA19961.928ENSHBUG00000017773rpa19961.401Haplochromis_burtoni
ENSCJAG00000001848RPA19988.762ENSHGLG00000008846RPA110088.762Heterocephalus_glaber_female
ENSCJAG00000001848RPA19988.762ENSHGLG00100017755-10088.762Heterocephalus_glaber_male
ENSCJAG00000001848RPA110075.487ENSHGLG00100002005-10075.487Heterocephalus_glaber_male
ENSCJAG00000001848RPA110084.253ENSHGLG00100000799-10084.253Heterocephalus_glaber_male
ENSCJAG00000001848RPA19944.677ENSHCOG00000000351RPA19944.516Hippocampus_comes
ENSCJAG00000001848RPA19958.966ENSHCOG00000001401rpa19959.675Hippocampus_comes
ENSCJAG00000001848RPA19961.774ENSIPUG00000004400rpa19961.426Ictalurus_punctatus
ENSCJAG00000001848RPA19881.878ENSSTOG00000022475RPA19981.729Ictidomys_tridecemlineatus
ENSCJAG00000001848RPA19589.796ENSJJAG00000000876Rpa19889.796Jaculus_jaculus
ENSCJAG00000001848RPA19960.294ENSKMAG00000005605rpa19959.740Kryptolebias_marmoratus
ENSCJAG00000001848RPA19954.677ENSKMAG00000000234RPA19954.120Kryptolebias_marmoratus
ENSCJAG00000001848RPA19663.039ENSLBEG00000002281RPA17963.039Labrus_bergylta
ENSCJAG00000001848RPA19961.338ENSLBEG00000021604rpa19960.621Labrus_bergylta
ENSCJAG00000001848RPA18167.265ENSLACG00000007210RPA19668.067Latimeria_chalumnae
ENSCJAG00000001848RPA19966.667ENSLOCG00000006397rpa19966.504Lepisosteus_oculatus
ENSCJAG00000001848RPA19987.097ENSLAFG00000015354RPA19987.097Loxodonta_africana
ENSCJAG00000001848RPA18293.267ENSMFAG00000036138-10093.083Macaca_fascicularis
ENSCJAG00000001848RPA19893.874ENSMMUG00000011604-10093.719Macaca_mulatta
ENSCJAG00000001848RPA110087.034ENSMMUG00000002442-10086.526Macaca_mulatta
ENSCJAG00000001848RPA18989.852ENSMNEG00000029837-10089.852Macaca_nemestrina
ENSCJAG00000001848RPA110091.234ENSMNEG00000031632-9893.390Macaca_nemestrina
ENSCJAG00000001848RPA19887.809ENSMLEG00000038768-10087.974Mandrillus_leucophaeus
ENSCJAG00000001848RPA19962.316ENSMAMG00000017993rpa19961.897Mastacembelus_armatus
ENSCJAG00000001848RPA19951.780ENSMAMG00000020097RPA18462.054Mastacembelus_armatus
ENSCJAG00000001848RPA19957.524ENSMZEG00005024731RPA19956.740Maylandia_zebra
ENSCJAG00000001848RPA19962.092ENSMZEG00005007551rpa19961.564Maylandia_zebra
ENSCJAG00000001848RPA19973.607ENSMGAG00000005315RPA19873.597Meleagris_gallopavo
ENSCJAG00000001848RPA19789.000ENSMAUG00000010474Rpa19989.000Mesocricetus_auratus
ENSCJAG00000001848RPA110091.558ENSMICG00000012867RPA110091.558Microcebus_murinus
ENSCJAG00000001848RPA19987.113ENSMOCG00000013019Rpa19987.113Microtus_ochrogaster
ENSCJAG00000001848RPA19656.926ENSMMOG00000010868RPA19656.926Mola_mola
ENSCJAG00000001848RPA19960.948ENSMMOG00000014292rpa19961.993Mola_mola
ENSCJAG00000001848RPA19983.252ENSMODG00000010549RPA19983.252Monodelphis_domestica
ENSCJAG00000001848RPA19961.928ENSMALG00000011453rpa19962.153Monopterus_albus
ENSCJAG00000001848RPA19461.991ENSMALG00000001208RPA17861.991Monopterus_albus
ENSCJAG00000001848RPA19987.013MGP_CAROLIEiJ_G0016734Rpa19986.688Mus_caroli
ENSCJAG00000001848RPA19985.048ENSMUSG00000000751Rpa19984.727Mus_musculus
ENSCJAG00000001848RPA19987.722MGP_PahariEiJ_G0017871Rpa19987.399Mus_pahari
ENSCJAG00000001848RPA19985.072MGP_SPRETEiJ_G0017577Rpa19984.270Mus_spretus
ENSCJAG00000001848RPA110087.987ENSMPUG00000013119RPA110087.987Mustela_putorius_furo
ENSCJAG00000001848RPA110086.151ENSMLUG00000006113RPA110086.151Myotis_lucifugus
ENSCJAG00000001848RPA19588.115ENSNGAG00000004522Rpa19488.115Nannospalax_galili
ENSCJAG00000001848RPA19655.987ENSNBRG00000009672RPA19555.649Neolamprologus_brichardi
ENSCJAG00000001848RPA19462.586ENSNBRG00000020595rpa19962.241Neolamprologus_brichardi
ENSCJAG00000001848RPA110093.831ENSNLEG00000017149RPA110093.831Nomascus_leucogenys
ENSCJAG00000001848RPA19872.727ENSMEUG00000006714RPA19972.397Notamacropus_eugenii
ENSCJAG00000001848RPA19587.270ENSODEG00000009038RPA19687.270Octodon_degus
ENSCJAG00000001848RPA19962.097ENSONIG00000013135rpa19961.576Oreochromis_niloticus
ENSCJAG00000001848RPA19881.592ENSOANG00000010880RPA19981.758Ornithorhynchus_anatinus
ENSCJAG00000001848RPA110085.294ENSOCUG00000001504RPA110085.294Oryctolagus_cuniculus
ENSCJAG00000001848RPA19953.577ENSORLG00000003368RPA18464.155Oryzias_latipes
ENSCJAG00000001848RPA19962.745ENSORLG00000004856rpa19962.357Oryzias_latipes
ENSCJAG00000001848RPA19962.745ENSORLG00020008980rpa19962.357Oryzias_latipes_hni
ENSCJAG00000001848RPA19952.252ENSORLG00020015284RPA18462.780Oryzias_latipes_hni
ENSCJAG00000001848RPA19953.787ENSORLG00015020383RPA19953.427Oryzias_latipes_hsok
ENSCJAG00000001848RPA17160.000ENSORLG00015005867-9860.000Oryzias_latipes_hsok
ENSCJAG00000001848RPA19962.745ENSORLG00015013982rpa19962.357Oryzias_latipes_hsok
ENSCJAG00000001848RPA19457.045ENSOMEG00000011040RPA19957.045Oryzias_melastigma
ENSCJAG00000001848RPA19960.848ENSOMEG00000004704rpa19960.359Oryzias_melastigma
ENSCJAG00000001848RPA110089.286ENSOGAG00000005581-10089.286Otolemur_garnettii
ENSCJAG00000001848RPA19486.316ENSOGAG00000029379-10086.316Otolemur_garnettii
ENSCJAG00000001848RPA110090.097ENSOARG00000014479RPA110090.097Ovis_aries
ENSCJAG00000001848RPA110093.831ENSPPAG00000039680RPA110093.831Pan_paniscus
ENSCJAG00000001848RPA110087.196ENSPPRG00000011807RPA19987.196Panthera_pardus
ENSCJAG00000001848RPA110087.034ENSPTIG00000007898RPA19987.034Panthera_tigris_altaica
ENSCJAG00000001848RPA110093.831ENSPTRG00000008539RPA110093.831Pan_troglodytes
ENSCJAG00000001848RPA110093.994ENSPANG00000024592RPA110093.994Papio_anubis
ENSCJAG00000001848RPA19462.779ENSPKIG00000008053rpa19462.779Paramormyrops_kingsleyae
ENSCJAG00000001848RPA19775.793ENSPSIG00000015617RPA19975.459Pelodiscus_sinensis
ENSCJAG00000001848RPA19954.153ENSPMGG00000000543RPA19955.439Periophthalmus_magnuspinnatus
ENSCJAG00000001848RPA19959.772ENSPMGG00000011589rpa19861.670Periophthalmus_magnuspinnatus
ENSCJAG00000001848RPA19988.581ENSPEMG00000021061Rpa19988.581Peromyscus_maniculatus_bairdii
ENSCJAG00000001848RPA110082.172ENSPCIG00000019049RPA19982.172Phascolarctos_cinereus
ENSCJAG00000001848RPA19962.520ENSPFOG00000003987rpa19961.765Poecilia_formosa
ENSCJAG00000001848RPA19962.357ENSPLAG00000004984rpa19961.967Poecilia_latipinna
ENSCJAG00000001848RPA19454.019ENSPLAG00000008844-9753.623Poecilia_latipinna
ENSCJAG00000001848RPA19453.933ENSPMEG00000003627-9753.784Poecilia_mexicana
ENSCJAG00000001848RPA19962.520ENSPMEG00000020602rpa19963.316Poecilia_mexicana
ENSCJAG00000001848RPA19157.041ENSPREG00000010174rpa19555.113Poecilia_reticulata
ENSCJAG00000001848RPA19952.430ENSPREG00000010119RPA110050.929Poecilia_reticulata
ENSCJAG00000001848RPA110091.396ENSPCOG00000001799RPA110091.396Propithecus_coquereli
ENSCJAG00000001848RPA19989.739ENSPVAG00000002149RPA19989.739Pteropus_vampyrus
ENSCJAG00000001848RPA19962.255ENSPNYG00000016316rpa19962.392Pundamilia_nyererei
ENSCJAG00000001848RPA19957.210ENSPNYG00000024165RPA19956.426Pundamilia_nyererei
ENSCJAG00000001848RPA19953.710ENSPNAG00000008599rpa19953.291Pygocentrus_nattereri
ENSCJAG00000001848RPA19988.254ENSRNOG00000003123Rpa19988.254Rattus_norvegicus
ENSCJAG00000001848RPA110093.193ENSRBIG00000036587RPA110092.695Rhinopithecus_bieti
ENSCJAG00000001848RPA110087.682ENSRROG00000043278RPA110087.175Rhinopithecus_roxellana
ENSCJAG00000001848RPA19932.212YAR007CRFA17037.986Saccharomyces_cerevisiae
ENSCJAG00000001848RPA19893.058ENSSBOG00000030233RPA110093.058Saimiri_boliviensis_boliviensis
ENSCJAG00000001848RPA19982.979ENSSHAG00000007969RPA19883.306Sarcophilus_harrisii
ENSCJAG00000001848RPA19964.052ENSSFOG00015005362rpa19263.889Scleropages_formosus
ENSCJAG00000001848RPA19952.727ENSSMAG00000019746RPA18463.801Scophthalmus_maximus
ENSCJAG00000001848RPA19963.132ENSSDUG00000011949rpa19962.704Seriola_dumerili
ENSCJAG00000001848RPA19952.269ENSSDUG00000016358RPA18265.158Seriola_dumerili
ENSCJAG00000001848RPA19963.295ENSSLDG00000011806rpa19962.541Seriola_lalandi_dorsalis
ENSCJAG00000001848RPA19951.453ENSSLDG00000020784RPA18164.932Seriola_lalandi_dorsalis
ENSCJAG00000001848RPA18885.294ENSSARG00000007506RPA18985.294Sorex_araneus
ENSCJAG00000001848RPA19772.483ENSSPUG00000007223RPA19972.315Sphenodon_punctatus
ENSCJAG00000001848RPA19962.480ENSSPAG00000009903rpa19961.726Stegastes_partitus
ENSCJAG00000001848RPA19956.863ENSSPAG00000011165RPA19956.863Stegastes_partitus
ENSCJAG00000001848RPA19889.884ENSSSCG00000017822RPA110089.884Sus_scrofa
ENSCJAG00000001848RPA110073.258ENSTGUG00000005775RPA19973.258Taeniopygia_guttata
ENSCJAG00000001848RPA19962.295ENSTRUG00000003616rpa19962.295Takifugu_rubripes
ENSCJAG00000001848RPA19956.886ENSTRUG00000000405RPA17762.557Takifugu_rubripes
ENSCJAG00000001848RPA19963.328ENSTNIG00000016199rpa19962.582Tetraodon_nigroviridis
ENSCJAG00000001848RPA17895.238ENSTBEG00000002709RPA18195.238Tupaia_belangeri
ENSCJAG00000001848RPA19987.967ENSTTRG00000001169RPA19987.967Tursiops_truncatus
ENSCJAG00000001848RPA19092.308ENSUAMG00000015676RPA19992.308Ursus_americanus
ENSCJAG00000001848RPA110088.799ENSUMAG00000009328RPA110088.799Ursus_maritimus
ENSCJAG00000001848RPA110087.662ENSVPAG00000009443RPA110087.662Vicugna_pacos
ENSCJAG00000001848RPA110089.123ENSVVUG00000021715RPA110089.123Vulpes_vulpes
ENSCJAG00000001848RPA19972.995ENSXETG00000013538rpa19973.322Xenopus_tropicalis
ENSCJAG00000001848RPA19161.429ENSXCOG00000010068rpa19460.830Xiphophorus_couchianus
ENSCJAG00000001848RPA19556.314ENSXCOG00000009899-9955.631Xiphophorus_couchianus
ENSCJAG00000001848RPA19963.311ENSXMAG00000010333RPA19461.229Xiphophorus_maculatus
ENSCJAG00000001848RPA19961.047ENSXMAG00000004102rpa19962.257Xiphophorus_maculatus

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