EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000001872 (Gene tree)
Gene ID: 100412678
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 120267 bases
Position: chrNTIC01008890.1:33617279-33737545
Accession: 100412678
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000003444	XRN_N	PF03159.18	1.3e-95	1	1
ENSCJAP00000063018	XRN_N	PF03159.18	1.4e-95	1	1
ENSCJAP00000003456	XRN_N	PF03159.18	2.9e-95	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000003634	XRN1-202	9293	-	ENSCJAP00000003444	1637 (aa)	-	F7GZR1
ENSCJAT00000076049	XRN1-201	10251	-	ENSCJAP00000063018	1694 (aa)	XP_002759572	U3CD29
ENSCJAT00000003646	XRN1-203	5121	-	ENSCJAP00000003456	1706 (aa)	XP_002759573	F7GUR3

Gene Model

Click here to download ENSCJAG00000001872's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03008	Ribosome biogenesis in eukaryotes	KEGG
cjc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000001872's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000001872	XRN1	100	96.281	ENSG00000114127	XRN1	100	98.788	Homo_sapiens
ENSCJAG00000001872	XRN1	100	61.822	ENSAPOG00000000622	xrn1	93	76.333	Acanthochromis_polyacanthus
ENSCJAG00000001872	XRN1	100	91.009	ENSAMEG00000012538	XRN1	100	91.009	Ailuropoda_melanoleuca
ENSCJAG00000001872	XRN1	95	72.299	ENSACIG00000001057	xrn1	99	72.461	Amphilophus_citrinellus
ENSCJAG00000001872	XRN1	99	61.910	ENSAOCG00000014097	xrn1	95	69.478	Amphiprion_ocellaris
ENSCJAG00000001872	XRN1	98	63.249	ENSAPEG00000006620	xrn1	91	72.494	Amphiprion_percula
ENSCJAG00000001872	XRN1	95	71.122	ENSATEG00000009752	xrn1	100	71.190	Anabas_testudineus
ENSCJAG00000001872	XRN1	98	77.039	ENSAPLG00000004905	XRN1	100	75.549	Anas_platyrhynchos
ENSCJAG00000001872	XRN1	99	73.808	ENSACAG00000004985	XRN1	100	72.297	Anolis_carolinensis
ENSCJAG00000001872	XRN1	100	98.229	ENSANAG00000029013	XRN1	100	98.229	Aotus_nancymaae
ENSCJAG00000001872	XRN1	100	60.680	ENSACLG00000004806	xrn1	99	60.372	Astatotilapia_calliptera
ENSCJAG00000001872	XRN1	98	62.819	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSCJAG00000001872	XRN1	100	91.857	ENSBTAG00000011524	XRN1	100	91.857	Bos_taurus
ENSCJAG00000001872	XRN1	73	38.982	WBGene00012730	xrn-1	81	38.993	Caenorhabditis_elegans
ENSCJAG00000001872	XRN1	100	92.732	ENSCAFG00000007783	XRN1	100	92.732	Canis_familiaris
ENSCJAG00000001872	XRN1	100	91.623	ENSCAFG00020009120	XRN1	99	93.429	Canis_lupus_dingo
ENSCJAG00000001872	XRN1	99	90.653	ENSCHIG00000019192	XRN1	99	90.110	Capra_hircus
ENSCJAG00000001872	XRN1	100	93.392	ENSTSYG00000002705	XRN1	100	93.392	Carlito_syrichta
ENSCJAG00000001872	XRN1	57	76.617	ENSCAPG00000004604	-	99	76.617	Cavia_aperea
ENSCJAG00000001872	XRN1	100	98.760	ENSCCAG00000034800	XRN1	100	98.760	Cebus_capucinus
ENSCJAG00000001872	XRN1	100	96.989	ENSCATG00000041794	XRN1	100	96.989	Cercocebus_atys
ENSCJAG00000001872	XRN1	100	87.767	ENSCLAG00000001451	XRN1	99	96.038	Chinchilla_lanigera
ENSCJAG00000001872	XRN1	100	96.719	ENSCSAG00000011265	XRN1	100	96.719	Chlorocebus_sabaeus
ENSCJAG00000001872	XRN1	61	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSCJAG00000001872	XRN1	73	44.930	ENSCSAVG00000008584	-	98	44.453	Ciona_savignyi
ENSCJAG00000001872	XRN1	100	96.753	ENSCANG00000037495	XRN1	99	98.415	Colobus_angolensis_palliatus
ENSCJAG00000001872	XRN1	100	87.637	ENSCGRG00001019411	Xrn1	99	95.880	Cricetulus_griseus_chok1gshd
ENSCJAG00000001872	XRN1	100	87.637	ENSCGRG00000012464	Xrn1	99	95.880	Cricetulus_griseus_crigri
ENSCJAG00000001872	XRN1	95	67.179	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSCJAG00000001872	XRN1	69	71.982	ENSCVAG00000013089	xrn1	99	71.982	Cyprinodon_variegatus
ENSCJAG00000001872	XRN1	99	64.341	ENSDARG00000091652	xrn1	98	79.958	Danio_rerio
ENSCJAG00000001872	XRN1	100	86.690	ENSDORG00000013833	Xrn1	100	86.690	Dipodomys_ordii
ENSCJAG00000001872	XRN1	77	39.938	FBgn0020261	pcm	76	39.846	Drosophila_melanogaster
ENSCJAG00000001872	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSCJAG00000001872	XRN1	100	92.150	ENSEASG00005002687	XRN1	99	96.038	Equus_asinus_asinus
ENSCJAG00000001872	XRN1	100	92.150	ENSECAG00000008301	XRN1	100	92.150	Equus_caballus
ENSCJAG00000001872	XRN1	92	83.187	ENSEEUG00000011323	XRN1	92	83.187	Erinaceus_europaeus
ENSCJAG00000001872	XRN1	100	62.824	ENSELUG00000000169	xrn1	100	61.810	Esox_lucius
ENSCJAG00000001872	XRN1	100	88.909	ENSFCAG00000027589	XRN1	99	95.415	Felis_catus
ENSCJAG00000001872	XRN1	100	74.621	ENSFALG00000007021	XRN1	100	73.952	Ficedula_albicollis
ENSCJAG00000001872	XRN1	100	88.748	ENSFDAG00000020494	XRN1	99	95.563	Fukomys_damarensis
ENSCJAG00000001872	XRN1	84	68.368	ENSGMOG00000006396	xrn1	83	68.368	Gadus_morhua
ENSCJAG00000001872	XRN1	99	75.965	ENSGALG00000002706	XRN1	100	74.398	Gallus_gallus
ENSCJAG00000001872	XRN1	99	61.273	ENSGACG00000014328	xrn1	100	60.455	Gasterosteus_aculeatus
ENSCJAG00000001872	XRN1	98	77.939	ENSGAGG00000017535	XRN1	99	77.939	Gopherus_agassizii
ENSCJAG00000001872	XRN1	100	96.517	ENSGGOG00000008047	XRN1	100	96.517	Gorilla_gorilla
ENSCJAG00000001872	XRN1	100	60.638	ENSHBUG00000005908	xrn1	98	72.895	Haplochromis_burtoni
ENSCJAG00000001872	XRN1	100	89.965	ENSHGLG00000014476	XRN1	99	96.672	Heterocephalus_glaber_female
ENSCJAG00000001872	XRN1	100	89.965	ENSHGLG00100015130	XRN1	99	96.672	Heterocephalus_glaber_male
ENSCJAG00000001872	XRN1	98	69.852	ENSHCOG00000014062	xrn1	99	70.000	Hippocampus_comes
ENSCJAG00000001872	XRN1	99	63.420	ENSIPUG00000015229	xrn1	97	63.329	Ictalurus_punctatus
ENSCJAG00000001872	XRN1	100	91.339	ENSSTOG00000013552	XRN1	99	97.306	Ictidomys_tridecemlineatus
ENSCJAG00000001872	XRN1	98	86.922	ENSJJAG00000010863	Xrn1	99	93.710	Jaculus_jaculus
ENSCJAG00000001872	XRN1	97	62.454	ENSKMAG00000021356	xrn1	94	75.949	Kryptolebias_marmoratus
ENSCJAG00000001872	XRN1	99	62.079	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSCJAG00000001872	XRN1	100	70.772	ENSLACG00000009020	XRN1	100	69.226	Latimeria_chalumnae
ENSCJAG00000001872	XRN1	99	67.976	ENSLOCG00000007944	xrn1	98	66.432	Lepisosteus_oculatus
ENSCJAG00000001872	XRN1	65	95.978	ENSLAFG00000015426	XRN1	100	95.978	Loxodonta_africana
ENSCJAG00000001872	XRN1	100	96.989	ENSMFAG00000032599	XRN1	100	96.989	Macaca_fascicularis
ENSCJAG00000001872	XRN1	100	97.048	ENSMMUG00000014038	XRN1	100	97.048	Macaca_mulatta
ENSCJAG00000001872	XRN1	100	96.871	ENSMNEG00000034217	XRN1	100	96.871	Macaca_nemestrina
ENSCJAG00000001872	XRN1	94	70.686	ENSMAMG00000013219	xrn1	94	77.113	Mastacembelus_armatus
ENSCJAG00000001872	XRN1	100	60.385	ENSMZEG00005015099	xrn1	99	60.259	Maylandia_zebra
ENSCJAG00000001872	XRN1	98	75.983	ENSMGAG00000006333	XRN1	100	74.421	Meleagris_gallopavo
ENSCJAG00000001872	XRN1	100	93.875	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSCJAG00000001872	XRN1	60	94.770	ENSMOCG00000008665	Xrn1	99	94.770	Microtus_ochrogaster
ENSCJAG00000001872	XRN1	100	82.020	ENSMODG00000021236	XRN1	100	81.845	Monodelphis_domestica
ENSCJAG00000001872	XRN1	99	58.956	ENSMALG00000004098	xrn1	100	56.905	Monopterus_albus
ENSCJAG00000001872	XRN1	96	94.945	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSCJAG00000001872	XRN1	100	86.366	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSCJAG00000001872	XRN1	100	86.482	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSCJAG00000001872	XRN1	100	86.308	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSCJAG00000001872	XRN1	100	93.204	ENSMPUG00000012040	XRN1	100	93.204	Mustela_putorius_furo
ENSCJAG00000001872	XRN1	100	88.857	ENSMLUG00000016885	XRN1	100	88.857	Myotis_lucifugus
ENSCJAG00000001872	XRN1	60	91.284	ENSNGAG00000023964	Xrn1	99	91.574	Nannospalax_galili
ENSCJAG00000001872	XRN1	100	96.753	ENSNLEG00000004726	XRN1	100	96.753	Nomascus_leucogenys
ENSCJAG00000001872	XRN1	80	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSCJAG00000001872	XRN1	79	84.160	ENSOPRG00000007337	-	78	84.160	Ochotona_princeps
ENSCJAG00000001872	XRN1	100	60.969	ENSONIG00000016673	xrn1	99	64.382	Oreochromis_niloticus
ENSCJAG00000001872	XRN1	92	78.080	ENSOANG00000006735	XRN1	100	78.016	Ornithorhynchus_anatinus
ENSCJAG00000001872	XRN1	100	89.742	ENSOCUG00000001861	XRN1	100	89.742	Oryctolagus_cuniculus
ENSCJAG00000001872	XRN1	100	61.312	ENSORLG00000013005	xrn1	100	60.780	Oryzias_latipes
ENSCJAG00000001872	XRN1	100	61.477	ENSORLG00020005559	xrn1	100	61.185	Oryzias_latipes_hni
ENSCJAG00000001872	XRN1	100	61.298	ENSORLG00015022523	xrn1	100	60.988	Oryzias_latipes_hsok
ENSCJAG00000001872	XRN1	92	72.801	ENSOMEG00000015397	xrn1	99	72.942	Oryzias_melastigma
ENSCJAG00000001872	XRN1	100	91.095	ENSOGAG00000000170	XRN1	100	91.213	Otolemur_garnettii
ENSCJAG00000001872	XRN1	99	92.375	ENSOARG00000006343	XRN1	99	92.375	Ovis_aries
ENSCJAG00000001872	XRN1	100	96.458	ENSPPAG00000010180	XRN1	100	96.458	Pan_paniscus
ENSCJAG00000001872	XRN1	100	93.274	ENSPPRG00000007125	XRN1	100	93.274	Panthera_pardus
ENSCJAG00000001872	XRN1	100	93.215	ENSPTIG00000021081	XRN1	100	93.215	Panthera_tigris_altaica
ENSCJAG00000001872	XRN1	100	96.340	ENSPTRG00000015482	XRN1	100	96.340	Pan_troglodytes
ENSCJAG00000001872	XRN1	100	96.930	ENSPANG00000010638	XRN1	100	96.930	Papio_anubis
ENSCJAG00000001872	XRN1	100	76.642	ENSPSIG00000018050	XRN1	100	76.756	Pelodiscus_sinensis
ENSCJAG00000001872	XRN1	59	77.394	ENSPMGG00000002648	xrn1	98	78.493	Periophthalmus_magnuspinnatus
ENSCJAG00000001872	XRN1	60	95.563	ENSPEMG00000020610	Xrn1	99	95.563	Peromyscus_maniculatus_bairdii
ENSCJAG00000001872	XRN1	68	50.464	ENSPMAG00000002975	xrn1	91	78.161	Petromyzon_marinus
ENSCJAG00000001872	XRN1	100	81.527	ENSPCIG00000028735	XRN1	99	89.762	Phascolarctos_cinereus
ENSCJAG00000001872	XRN1	94	64.578	ENSPFOG00000013932	xrn1	99	64.917	Poecilia_formosa
ENSCJAG00000001872	XRN1	94	63.338	ENSPLAG00000021653	xrn1	99	64.132	Poecilia_latipinna
ENSCJAG00000001872	XRN1	92	64.189	ENSPMEG00000003076	xrn1	95	64.679	Poecilia_mexicana
ENSCJAG00000001872	XRN1	99	62.270	ENSPREG00000021147	xrn1	100	61.095	Poecilia_reticulata
ENSCJAG00000001872	XRN1	100	96.366	ENSPPYG00000014172	XRN1	100	96.366	Pongo_abelii
ENSCJAG00000001872	XRN1	90	83.997	ENSPCAG00000005638	XRN1	99	81.948	Procavia_capensis
ENSCJAG00000001872	XRN1	100	94.395	ENSPCOG00000013089	XRN1	99	97.173	Propithecus_coquereli
ENSCJAG00000001872	XRN1	96	92.114	ENSPVAG00000016265	XRN1	96	92.114	Pteropus_vampyrus
ENSCJAG00000001872	XRN1	100	60.797	ENSPNYG00000010570	xrn1	99	60.819	Pundamilia_nyererei
ENSCJAG00000001872	XRN1	99	61.377	ENSPNAG00000023531	xrn1	96	61.387	Pygocentrus_nattereri
ENSCJAG00000001872	XRN1	100	87.002	ENSRNOG00000042951	Xrn1	100	87.002	Rattus_norvegicus
ENSCJAG00000001872	XRN1	100	96.075	ENSRBIG00000041227	XRN1	100	96.075	Rhinopithecus_bieti
ENSCJAG00000001872	XRN1	69	54.496	YGL173C	XRN1	81	34.591	Saccharomyces_cerevisiae
ENSCJAG00000001872	XRN1	100	98.288	ENSSBOG00000029561	XRN1	100	98.288	Saimiri_boliviensis_boliviensis
ENSCJAG00000001872	XRN1	99	81.113	ENSSHAG00000016207	XRN1	100	80.935	Sarcophilus_harrisii
ENSCJAG00000001872	XRN1	99	62.350	ENSSFOG00015024211	xrn1	97	62.545	Scleropages_formosus
ENSCJAG00000001872	XRN1	94	72.375	ENSSMAG00000016534	xrn1	98	72.375	Scophthalmus_maximus
ENSCJAG00000001872	XRN1	90	72.195	ENSSDUG00000010306	xrn1	97	72.042	Seriola_dumerili
ENSCJAG00000001872	XRN1	96	70.451	ENSSLDG00000021543	xrn1	100	71.531	Seriola_lalandi_dorsalis
ENSCJAG00000001872	XRN1	70	84.917	ENSSARG00000007741	-	83	84.917	Sorex_araneus
ENSCJAG00000001872	XRN1	100	76.785	ENSTGUG00000008498	XRN1	100	76.083	Taeniopygia_guttata
ENSCJAG00000001872	XRN1	100	58.974	ENSTRUG00000004895	xrn1	96	75.365	Takifugu_rubripes
ENSCJAG00000001872	XRN1	96	68.471	ENSTNIG00000017615	xrn1	98	59.631	Tetraodon_nigroviridis
ENSCJAG00000001872	XRN1	84	97.305	ENSTBEG00000003256	XRN1	89	87.241	Tupaia_belangeri
ENSCJAG00000001872	XRN1	100	88.335	ENSTTRG00000012914	XRN1	100	88.335	Tursiops_truncatus
ENSCJAG00000001872	XRN1	100	91.979	ENSUAMG00000001608	XRN1	99	93.429	Ursus_americanus
ENSCJAG00000001872	XRN1	100	93.794	ENSUMAG00000013625	XRN1	100	93.794	Ursus_maritimus
ENSCJAG00000001872	XRN1	100	90.211	ENSVPAG00000004690	XRN1	100	90.211	Vicugna_pacos
ENSCJAG00000001872	XRN1	100	93.556	ENSVVUG00000024461	XRN1	99	96.830	Vulpes_vulpes
ENSCJAG00000001872	XRN1	100	69.356	ENSXETG00000000619	xrn1	99	88.542	Xenopus_tropicalis
ENSCJAG00000001872	XRN1	100	61.034	ENSXCOG00000007917	xrn1	100	60.842	Xiphophorus_couchianus
ENSCJAG00000001872	XRN1	92	71.964	ENSXMAG00000018320	xrn1	98	72.046	Xiphophorus_maculatus