EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCJAG00000002512 (Gene tree)
Gene ID
100399096
Gene Symbol
-
Alias
APP-1|iPABP
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Callithrix_jacchus
Status
putative
Strand
Plus strand
Length
13175 bases
Position
chrNTIC01036611.1:81943168-81956342
Accession
100399096
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCJAP00000004611PABPPF00658.182.2e-3111
ENSCJAP00000004606PABPPF00658.182.5e-3111
ENSCJAP00000004611RRM_5PF13893.63.5e-0811
ENSCJAP00000004606RRM_5PF13893.64.4e-0811
ENSCJAP00000004611RRM_1PF00076.226.7e-9114
ENSCJAP00000004611RRM_1PF00076.226.7e-9124
ENSCJAP00000004611RRM_1PF00076.226.7e-9134
ENSCJAP00000004611RRM_1PF00076.226.7e-9144
ENSCJAP00000004606RRM_1PF00076.228.6e-9114
ENSCJAP00000004606RRM_1PF00076.228.6e-9124
ENSCJAP00000004606RRM_1PF00076.228.6e-9134
ENSCJAP00000004606RRM_1PF00076.228.6e-9144
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCJAT00000004855-1983-ENSCJAP00000004606660 (aa)XP_017830071U3CSD6
ENSCJAT00000004862-1896-ENSCJAP00000004611631 (aa)XP_017830074U3D9D9
Gene Model
Click here to download ENSCJAG00000002512's gene model file
Pathways
Pathway IDPathway NameSource
cjc03013RNA transportKEGG
cjc03015mRNA surveillance pathwayKEGG
cjc03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000002512's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCJAG00000002512-9767.258ENSCJAG00000017628PABPC1L9967.258
ENSCJAG00000002512-5876.650ENSCJAG00000041326-9976.650
ENSCJAG00000002512-8767.870ENSCJAG00000045282-10068.108
ENSCJAG00000002512-5832.099ENSCJAG00000013725ELAVL48730.921
ENSCJAG00000002512-5883.908ENSCJAG00000038506-10083.908
ENSCJAG00000002512-5738.750ENSCJAG00000017535RBM395639.241
ENSCJAG00000002512-5837.500ENSCJAG00000020663CELF26037.500
ENSCJAG00000002512-6173.514ENSCJAG00000045332PABPC4L8773.514
ENSCJAG00000002512-7790.164ENSCJAG00000045953-9290.123
ENSCJAG00000002512-5931.579ENSCJAG00000008064ELAVL28834.940
ENSCJAG00000002512-5730.189ENSCJAG00000019278TIA18530.189
ENSCJAG00000002512-6067.135ENSCJAG00000003665PABPC59666.942
ENSCJAG00000002512-6233.735ENSCJAG00000005589ELAVL39233.735
ENSCJAG00000002512-7579.915ENSCJAG00000041162-9479.915
ENSCJAG00000002512-5430.380ENSCJAG00000006112HNRNPA05031.126
ENSCJAG00000002512-5831.395ENSCJAG00000019682TIAL17631.395
ENSCJAG00000002512-5833.553ENSCJAG00000046587ELAVL19533.553
ENSCJAG00000002512-9978.471ENSCJAG00000015833PABPC19978.315
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCJAG00000002512-10099.697ENSG00000090621PABPC4100100.000Homo_sapiens
ENSCJAG00000002512-9983.201ENSAPOG00000001161pabpc410082.298Acanthochromis_polyacanthus
ENSCJAG00000002512-10098.636ENSAMEG00000011535-10098.636Ailuropoda_melanoleuca
ENSCJAG00000002512-9857.395ENSAMEG00000015083-9957.074Ailuropoda_melanoleuca
ENSCJAG00000002512-10083.438ENSACIG00000023343pabpc410084.062Amphilophus_citrinellus
ENSCJAG00000002512-9983.360ENSAOCG00000021529pabpc410090.583Amphiprion_ocellaris
ENSCJAG00000002512-9983.360ENSAPEG00000019196pabpc410083.594Amphiprion_percula
ENSCJAG00000002512-9982.622ENSATEG00000007402pabpc410082.426Anabas_testudineus
ENSCJAG00000002512-9991.270ENSAPLG00000009729-10091.270Anas_platyrhynchos
ENSCJAG00000002512-9990.161ENSACAG00000002544PABPC410090.161Anolis_carolinensis
ENSCJAG00000002512-10099.545ENSANAG00000025079PABPC410099.545Aotus_nancymaae
ENSCJAG00000002512-10082.969ENSACLG00000019558pabpc410083.048Astatotilapia_calliptera
ENSCJAG00000002512-9979.081ENSAMXG00000018779pabpc49979.715Astyanax_mexicanus
ENSCJAG00000002512-10096.218ENSBTAG00000017125PABPC410096.218Bos_taurus
ENSCJAG00000002512-5786.826ENSBTAG00000048536-9886.826Bos_taurus
ENSCJAG00000002512-10098.891ENSCAFG00000003081PABPC410098.891Canis_familiaris
ENSCJAG00000002512-10098.788ENSCAFG00020004161PABPC410098.788Canis_lupus_dingo
ENSCJAG00000002512-10076.515ENSCHIG00000023385-10076.515Capra_hircus
ENSCJAG00000002512-10098.636ENSCHIG00000019398-10098.636Capra_hircus
ENSCJAG00000002512-10099.394ENSTSYG00000006532PABPC410099.394Carlito_syrichta
ENSCJAG00000002512-9999.088ENSCAPG00000015984PABPC410099.088Cavia_aperea
ENSCJAG00000002512-10099.091ENSCPOG00000009552PABPC410099.091Cavia_porcellus
ENSCJAG00000002512-10099.545ENSCCAG00000037306PABPC410099.545Cebus_capucinus
ENSCJAG00000002512-10099.545ENSCATG00000042164PABPC410099.545Cercocebus_atys
ENSCJAG00000002512-10098.788ENSCLAG00000011899PABPC410098.788Chinchilla_lanigera
ENSCJAG00000002512-10099.545ENSCSAG00000001135PABPC410099.545Chlorocebus_sabaeus
ENSCJAG00000002512-8697.625ENSCHOG00000005327PABPC48197.625Choloepus_hoffmanni
ENSCJAG00000002512-9991.587ENSCPBG00000001038PABPC410091.587Chrysemys_picta_bellii
ENSCJAG00000002512-9999.386ENSCANG00000034177PABPC410099.386Colobus_angolensis_palliatus
ENSCJAG00000002512-10097.139ENSCGRG00001018166Pabpc410097.139Cricetulus_griseus_chok1gshd
ENSCJAG00000002512-9994.656ENSCGRG00000009777Pabpc410094.656Cricetulus_griseus_crigri
ENSCJAG00000002512-10082.344ENSCSEG00000000130pabpc410082.426Cynoglossus_semilaevis
ENSCJAG00000002512-9983.466ENSCVAG00000019246pabpc410083.703Cyprinodon_variegatus
ENSCJAG00000002512-9985.079ENSDARG00000059259pabpc410085.855Danio_rerio
ENSCJAG00000002512-9999.107ENSDNOG00000018444-10099.107Dasypus_novemcinctus
ENSCJAG00000002512-10096.667ENSDORG00000011581Pabpc410096.667Dipodomys_ordii
ENSCJAG00000002512-8665.000ENSETEG00000009172-9965.018Echinops_telfairi
ENSCJAG00000002512-100100.000ENSETEG00000018453-84100.000Echinops_telfairi
ENSCJAG00000002512-9776.898ENSEBUG00000013782pabpc49976.108Eptatretus_burgeri
ENSCJAG00000002512-9976.582ENSEBUG00000000992pabpc49980.346Eptatretus_burgeri
ENSCJAG00000002512-10099.242ENSEASG00005014119PABPC410099.242Equus_asinus_asinus
ENSCJAG00000002512-10099.242ENSECAG00000009396PABPC410099.242Equus_caballus
ENSCJAG00000002512-10095.909ENSEEUG00000002962PABPC410095.909Erinaceus_europaeus
ENSCJAG00000002512-9983.439ENSELUG00000003195pabpc49884.019Esox_lucius
ENSCJAG00000002512-10098.939ENSFCAG00000015254-10098.939Felis_catus
ENSCJAG00000002512-9990.952ENSFALG00000000543PABPC410090.952Ficedula_albicollis
ENSCJAG00000002512-9066.872ENSFDAG00000010581-10063.193Fukomys_damarensis
ENSCJAG00000002512-10099.091ENSFDAG00000020016-10099.091Fukomys_damarensis
ENSCJAG00000002512-10083.255ENSFHEG00000007548pabpc49688.571Fundulus_heteroclitus
ENSCJAG00000002512-9982.650ENSGMOG00000019025pabpc49983.281Gadus_morhua
ENSCJAG00000002512-9991.587ENSGALG00000003800PABPC410091.587Gallus_gallus
ENSCJAG00000002512-9990.330ENSGAFG00000018195pabpc49895.556Gambusia_affinis
ENSCJAG00000002512-10081.435ENSGACG00000007179pabpc410082.059Gasterosteus_aculeatus
ENSCJAG00000002512-9991.429ENSGAGG00000001888PABPC410091.429Gopherus_agassizii
ENSCJAG00000002512-10099.697ENSGGOG00000004002PABPC410099.697Gorilla_gorilla
ENSCJAG00000002512-10083.125ENSHBUG00000020206pabpc410083.204Haplochromis_burtoni
ENSCJAG00000002512-10099.242ENSHGLG00000011162PABPC410099.242Heterocephalus_glaber_female
ENSCJAG00000002512-10099.208ENSHGLG00100001580PABPC410099.208Heterocephalus_glaber_male
ENSCJAG00000002512-10082.316ENSHCOG00000012694pabpc410082.942Hippocampus_comes
ENSCJAG00000002512-9883.307ENSIPUG00000016620pabpc49983.333Ictalurus_punctatus
ENSCJAG00000002512-10096.667ENSSTOG00000010416PABPC410096.667Ictidomys_tridecemlineatus
ENSCJAG00000002512-10094.545ENSJJAG00000007781Pabpc410094.545Jaculus_jaculus
ENSCJAG00000002512-9982.677ENSKMAG00000013597pabpc49982.188Kryptolebias_marmoratus
ENSCJAG00000002512-10082.582ENSLBEG00000013654pabpc410082.143Labrus_bergylta
ENSCJAG00000002512-9988.013ENSLACG00000011907PABPC410088.013Latimeria_chalumnae
ENSCJAG00000002512-9985.354ENSLOCG00000001877pabpc49986.142Lepisosteus_oculatus
ENSCJAG00000002512-10098.788ENSLAFG00000000151PABPC410098.788Loxodonta_africana
ENSCJAG00000002512-10099.545ENSMFAG00000041481PABPC410099.545Macaca_fascicularis
ENSCJAG00000002512-10099.545ENSMMUG00000007497PABPC410099.545Macaca_mulatta
ENSCJAG00000002512-10099.394ENSMNEG00000043054PABPC410099.394Macaca_nemestrina
ENSCJAG00000002512-10099.545ENSMLEG00000040716PABPC410099.545Mandrillus_leucophaeus
ENSCJAG00000002512-9983.201ENSMAMG00000010025pabpc49982.059Mastacembelus_armatus
ENSCJAG00000002512-10090.847ENSMZEG00005006141pabpc410082.893Maylandia_zebra
ENSCJAG00000002512-9987.734ENSMGAG00000005408PABPC410087.734Meleagris_gallopavo
ENSCJAG00000002512-5781.287ENSMAUG00000004089-9281.287Mesocricetus_auratus
ENSCJAG00000002512-76100.000ENSMAUG00000019763-8495.413Mesocricetus_auratus
ENSCJAG00000002512-7289.423ENSMAUG00000001295-9789.423Mesocricetus_auratus
ENSCJAG00000002512-8996.085ENSMICG00000016633-9799.149Microcebus_murinus
ENSCJAG00000002512-9980.817ENSMICG00000036729-10085.080Microcebus_murinus
ENSCJAG00000002512-10097.440ENSMOCG00000006763Pabpc410097.440Microtus_ochrogaster
ENSCJAG00000002512-10080.346ENSMMOG00000002363pabpc49979.507Mola_mola
ENSCJAG00000002512-5973.446ENSMODG00000018051-9173.446Monodelphis_domestica
ENSCJAG00000002512-9889.043ENSMODG00000017657-10088.636Monodelphis_domestica
ENSCJAG00000002512-9982.780ENSMALG00000011017pabpc410082.326Monopterus_albus
ENSCJAG00000002512-10097.121MGP_CAROLIEiJ_G0026435-10099.291Mus_caroli
ENSCJAG00000002512-9983.390MGP_CAROLIEiJ_G0024864-10083.390Mus_caroli
ENSCJAG00000002512-10097.576ENSMUSG00000011257Pabpc410099.405Mus_musculus
ENSCJAG00000002512-9997.235MGP_PahariEiJ_G0028765Pabpc4100100.000Mus_pahari
ENSCJAG00000002512-9978.306MGP_SPRETEiJ_G0027415Pabpc410099.291Mus_spretus
ENSCJAG00000002512-9553.477ENSMPUG00000006836-10053.311Mustela_putorius_furo
ENSCJAG00000002512-10098.939ENSMPUG00000014414-10098.939Mustela_putorius_furo
ENSCJAG00000002512-10096.355ENSMLUG00000012068PABPC410096.355Myotis_lucifugus
ENSCJAG00000002512-10096.515ENSNGAG00000018292Pabpc410096.515Nannospalax_galili
ENSCJAG00000002512-5992.788ENSNBRG00000009708pabpc49892.788Neolamprologus_brichardi
ENSCJAG00000002512-6786.441ENSNBRG00000010047-7586.441Neolamprologus_brichardi
ENSCJAG00000002512-10099.525ENSNLEG00000011928PABPC410099.525Nomascus_leucogenys
ENSCJAG00000002512-8598.526ENSOPRG00000011984PABPC48798.526Ochotona_princeps
ENSCJAG00000002512-9989.117ENSODEG00000017434-10089.002Octodon_degus
ENSCJAG00000002512-10098.485ENSODEG00000006592-10098.485Octodon_degus
ENSCJAG00000002512-5385.714ENSODEG00000013457-10085.714Octodon_degus
ENSCJAG00000002512-10083.125ENSONIG00000008176pabpc410083.750Oreochromis_niloticus
ENSCJAG00000002512-9990.952ENSOANG00000010001PABPC410090.952Ornithorhynchus_anatinus
ENSCJAG00000002512-9698.892ENSOCUG00000000562PABPC48898.892Oryctolagus_cuniculus
ENSCJAG00000002512-9990.741ENSORLG00000017479pabpc49990.741Oryzias_latipes
ENSCJAG00000002512-9990.741ENSORLG00020018644pabpc49990.741Oryzias_latipes_hni
ENSCJAG00000002512-9990.741ENSORLG00015015042pabpc49990.741Oryzias_latipes_hsok
ENSCJAG00000002512-9983.043ENSOMEG00000014410pabpc49983.491Oryzias_melastigma
ENSCJAG00000002512-10096.531ENSOGAG00000004067PABPC410096.531Otolemur_garnettii
ENSCJAG00000002512-10098.636ENSOARG00000020060PABPC410098.636Ovis_aries
ENSCJAG00000002512-10099.697ENSPPAG00000043625PABPC410099.697Pan_paniscus
ENSCJAG00000002512-10098.939ENSPPRG00000024727PABPC410098.939Panthera_pardus
ENSCJAG00000002512-10098.939ENSPTIG00000005829PABPC410098.939Panthera_tigris_altaica
ENSCJAG00000002512-10099.697ENSPTRG00000000573PABPC410099.697Pan_troglodytes
ENSCJAG00000002512-10099.394ENSPANG00000009484PABPC410099.394Papio_anubis
ENSCJAG00000002512-9984.810ENSPKIG00000025356pabpc49985.443Paramormyrops_kingsleyae
ENSCJAG00000002512-9991.587ENSPSIG00000016892PABPC410091.587Pelodiscus_sinensis
ENSCJAG00000002512-10081.417ENSPMGG00000009073pabpc49981.319Periophthalmus_magnuspinnatus
ENSCJAG00000002512-10096.970ENSPEMG00000023569-9996.970Peromyscus_maniculatus_bairdii
ENSCJAG00000002512-10090.758ENSPEMG00000024193-9990.758Peromyscus_maniculatus_bairdii
ENSCJAG00000002512-9771.107ENSPMAG00000007885pabpc410069.822Petromyzon_marinus
ENSCJAG00000002512-8973.484ENSPMAG00000002836pabpc410073.196Petromyzon_marinus
ENSCJAG00000002512-9892.557ENSPCIG00000020674PABPC410093.333Phascolarctos_cinereus
ENSCJAG00000002512-10082.473ENSPFOG00000002682pabpc410082.764Poecilia_formosa
ENSCJAG00000002512-10082.473ENSPLAG00000010112pabpc410083.178Poecilia_latipinna
ENSCJAG00000002512-9982.989ENSPMEG00000019739pabpc410082.919Poecilia_mexicana
ENSCJAG00000002512-10083.220ENSPREG00000001589pabpc410083.220Poecilia_reticulata
ENSCJAG00000002512-10099.697ENSPPYG00000001506PABPC410099.697Pongo_abelii
ENSCJAG00000002512-10093.939ENSPCAG00000003341PABPC410093.939Procavia_capensis
ENSCJAG00000002512-9981.834ENSPCOG00000025882-9594.059Propithecus_coquereli
ENSCJAG00000002512-10099.244ENSPCOG00000023725-10099.244Propithecus_coquereli
ENSCJAG00000002512-9998.319ENSPVAG00000002187PABPC410098.319Pteropus_vampyrus
ENSCJAG00000002512-10082.969ENSPNYG00000006134pabpc410083.048Pundamilia_nyererei
ENSCJAG00000002512-10083.568ENSPNAG00000024355pabpc410084.194Pygocentrus_nattereri
ENSCJAG00000002512-10095.303ENSRNOG00000015642Pabpc410095.303Rattus_norvegicus
ENSCJAG00000002512-10093.182ENSRNOG00000028592AABR07035074.110093.182Rattus_norvegicus
ENSCJAG00000002512-10099.545ENSRBIG00000039761PABPC410099.545Rhinopithecus_bieti
ENSCJAG00000002512-10099.545ENSRROG00000033355PABPC410099.545Rhinopithecus_roxellana
ENSCJAG00000002512-10099.394ENSSBOG00000026193PABPC410099.394Saimiri_boliviensis_boliviensis
ENSCJAG00000002512-9892.395ENSSHAG00000018139PABPC410091.905Sarcophilus_harrisii
ENSCJAG00000002512-9985.714ENSSFOG00015023514pabpc49985.714Scleropages_formosus
ENSCJAG00000002512-9982.437ENSSMAG00000009007pabpc49982.104Scophthalmus_maximus
ENSCJAG00000002512-9982.726ENSSDUG00000012683pabpc49588.046Seriola_dumerili
ENSCJAG00000002512-9982.726ENSSLDG00000013025pabpc410082.969Seriola_lalandi_dorsalis
ENSCJAG00000002512-10091.818ENSSARG00000000310PABPC410091.818Sorex_araneus
ENSCJAG00000002512-9989.841ENSSPUG00000003204PABPC410089.841Sphenodon_punctatus
ENSCJAG00000002512-9990.562ENSSPAG00000009252pabpc49983.176Stegastes_partitus
ENSCJAG00000002512-8950.168ENSSSCG00000036170-9650.168Sus_scrofa
ENSCJAG00000002512-10098.788ENSSSCG00000003660-10098.788Sus_scrofa
ENSCJAG00000002512-9987.595ENSTGUG00000001266PABPC410087.595Taeniopygia_guttata
ENSCJAG00000002512-10082.075ENSTRUG00000005907pabpc49982.003Takifugu_rubripes
ENSCJAG00000002512-10078.213ENSTNIG00000016902pabpc49978.213Tetraodon_nigroviridis
ENSCJAG00000002512-9988.403ENSTBEG00000009035PABPC410088.403Tupaia_belangeri
ENSCJAG00000002512-9983.142ENSTTRG00000014340PABPC410086.723Tursiops_truncatus
ENSCJAG00000002512-10098.732ENSUAMG00000000303PABPC410098.732Ursus_americanus
ENSCJAG00000002512-10098.636ENSUMAG00000019585PABPC410099.057Ursus_maritimus
ENSCJAG00000002512-8497.163ENSVPAG00000010041PABPC47797.163Vicugna_pacos
ENSCJAG00000002512-10098.891ENSVVUG00000005215PABPC410098.891Vulpes_vulpes
ENSCJAG00000002512-9983.175ENSXETG00000010946pabpc410083.175Xenopus_tropicalis
ENSCJAG00000002512-5997.024ENSXETG00000027221-10097.024Xenopus_tropicalis
ENSCJAG00000002512-9989.091ENSXCOG00000013190pabpc49689.623Xiphophorus_couchianus
ENSCJAG00000002512-10082.786ENSXMAG00000019007pabpc410083.022Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us