EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000002705 (Gene tree)
Gene ID: 100399108
Gene Symbol: -
Alias: Sm-F
Full Name: small nuclear ribonucleoprotein polypeptide F
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 21137 bases
Position: chrNTIC01000002.1:35839669-35860805
Accession: 100399108
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000004916	LSM	PF01423.22	3.7e-21	1	1
ENSCJAP00000061259	LSM	PF01423.22	2.9e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000005183	-	261	-	ENSCJAP00000004916	86 (aa)	XP_009002645	F6UZL4
ENSCJAT00000032999	-	204	-	ENSCJAP00000061259	67 (aa)	-	A0A2R8PDD7

Gene Model

Click here to download ENSCJAG00000002705's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000002705's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000002705	-	77	51.515	ENSCJAG00000002482	LSM6	83	51.515

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000002705	-	100	100.000	ENSG00000139343	SNRPF	100	100.000	Homo_sapiens
ENSCJAG00000002705	-	99	97.647	ENSAPOG00000003377	snrpf	66	97.647	Acanthochromis_polyacanthus
ENSCJAG00000002705	-	99	100.000	ENSAMEG00000002166	-	100	100.000	Ailuropoda_melanoleuca
ENSCJAG00000002705	-	88	86.842	ENSAMEG00000018718	-	87	88.000	Ailuropoda_melanoleuca
ENSCJAG00000002705	-	98	97.619	ENSACIG00000013216	snrpf	99	97.619	Amphilophus_citrinellus
ENSCJAG00000002705	-	98	97.619	ENSAOCG00000015108	snrpf	99	97.619	Amphiprion_ocellaris
ENSCJAG00000002705	-	98	97.619	ENSAPEG00000022022	snrpf	99	97.619	Amphiprion_percula
ENSCJAG00000002705	-	98	97.619	ENSATEG00000022625	snrpf	90	97.619	Anabas_testudineus
ENSCJAG00000002705	-	99	98.824	ENSACAG00000014073	SNRPF	98	98.824	Anolis_carolinensis
ENSCJAG00000002705	-	83	91.549	ENSANAG00000020297	-	65	91.549	Aotus_nancymaae
ENSCJAG00000002705	-	87	69.333	ENSANAG00000025860	-	85	69.333	Aotus_nancymaae
ENSCJAG00000002705	-	100	100.000	ENSANAG00000032845	SNRPF	100	100.000	Aotus_nancymaae
ENSCJAG00000002705	-	98	97.619	ENSACLG00000016066	snrpf	99	97.619	Astatotilapia_calliptera
ENSCJAG00000002705	-	87	94.667	ENSAMXG00000007421	snrpf	87	94.667	Astyanax_mexicanus
ENSCJAG00000002705	-	91	93.590	ENSBTAG00000050012	-	93	93.333	Bos_taurus
ENSCJAG00000002705	-	100	100.000	ENSBTAG00000016271	SNRPF	100	100.000	Bos_taurus
ENSCJAG00000002705	-	90	72.727	WBGene00004918	snr-5	85	75.000	Caenorhabditis_elegans
ENSCJAG00000002705	-	100	100.000	ENSCAFG00000006395	-	77	100.000	Canis_familiaris
ENSCJAG00000002705	-	85	91.781	ENSCAFG00000031151	-	85	94.521	Canis_familiaris
ENSCJAG00000002705	-	91	88.462	ENSCAFG00020013161	-	74	97.143	Canis_lupus_dingo
ENSCJAG00000002705	-	85	91.781	ENSCAFG00020010823	-	85	94.521	Canis_lupus_dingo
ENSCJAG00000002705	-	87	86.667	ENSTSYG00000030635	-	87	86.667	Carlito_syrichta
ENSCJAG00000002705	-	94	93.827	ENSTSYG00000031636	-	61	95.890	Carlito_syrichta
ENSCJAG00000002705	-	100	94.253	ENSTSYG00000036502	-	100	94.253	Carlito_syrichta
ENSCJAG00000002705	-	99	100.000	ENSCAPG00000007242	SNRPF	100	100.000	Cavia_aperea
ENSCJAG00000002705	-	100	100.000	ENSCPOG00000013898	SNRPF	100	100.000	Cavia_porcellus
ENSCJAG00000002705	-	100	88.372	ENSCCAG00000033627	-	59	89.333	Cebus_capucinus
ENSCJAG00000002705	-	100	98.837	ENSCCAG00000017356	-	100	98.837	Cebus_capucinus
ENSCJAG00000002705	-	100	100.000	ENSCCAG00000037378	-	100	100.000	Cebus_capucinus
ENSCJAG00000002705	-	100	100.000	ENSCLAG00000007200	SNRPF	100	100.000	Chinchilla_lanigera
ENSCJAG00000002705	-	100	100.000	ENSCSAG00000003602	-	70	100.000	Chlorocebus_sabaeus
ENSCJAG00000002705	-	74	100.000	ENSCHOG00000009392	SNRPF	100	100.000	Choloepus_hoffmanni
ENSCJAG00000002705	-	87	92.000	ENSCPBG00000006227	-	87	92.000	Chrysemys_picta_bellii
ENSCJAG00000002705	-	100	88.372	ENSCPBG00000001985	-	89	90.667	Chrysemys_picta_bellii
ENSCJAG00000002705	-	99	94.118	ENSCPBG00000024287	-	67	94.118	Chrysemys_picta_bellii
ENSCJAG00000002705	-	100	89.535	ENSCPBG00000026463	-	87	90.667	Chrysemys_picta_bellii
ENSCJAG00000002705	-	99	87.059	ENSCSAVG00000007498	-	84	89.189	Ciona_savignyi
ENSCJAG00000002705	-	87	92.000	ENSCGRG00001008965	-	58	92.000	Cricetulus_griseus_chok1gshd
ENSCJAG00000002705	-	100	100.000	ENSCGRG00001017100	-	100	100.000	Cricetulus_griseus_chok1gshd
ENSCJAG00000002705	-	100	100.000	ENSCGRG00000000336	-	100	100.000	Cricetulus_griseus_crigri
ENSCJAG00000002705	-	93	92.500	ENSCGRG00000018878	-	94	92.000	Cricetulus_griseus_crigri
ENSCJAG00000002705	-	87	96.000	ENSCSEG00000004748	snrpf	87	96.000	Cynoglossus_semilaevis
ENSCJAG00000002705	-	99	97.647	ENSCVAG00000000397	snrpf	67	97.647	Cyprinodon_variegatus
ENSCJAG00000002705	-	100	95.455	ENSDARG00000105037	snrpf	100	95.455	Danio_rerio
ENSCJAG00000002705	-	87	84.000	ENSDNOG00000049373	-	65	84.000	Dasypus_novemcinctus
ENSCJAG00000002705	-	100	100.000	ENSDNOG00000043775	-	55	100.000	Dasypus_novemcinctus
ENSCJAG00000002705	-	100	98.837	ENSDNOG00000048989	-	77	98.837	Dasypus_novemcinctus
ENSCJAG00000002705	-	81	98.571	ENSDORG00000029740	-	85	98.571	Dipodomys_ordii
ENSCJAG00000002705	-	84	88.889	ENSDORG00000025351	-	100	88.889	Dipodomys_ordii
ENSCJAG00000002705	-	98	78.571	FBgn0000426	SmF	83	82.192	Drosophila_melanogaster
ENSCJAG00000002705	-	100	100.000	ENSETEG00000001558	-	100	100.000	Echinops_telfairi
ENSCJAG00000002705	-	95	75.610	ENSEBUG00000001793	-	72	86.567	Eptatretus_burgeri
ENSCJAG00000002705	-	100	100.000	ENSECAG00000019817	SNRPF	70	100.000	Equus_caballus
ENSCJAG00000002705	-	99	100.000	ENSEEUG00000013509	SNRPF	100	100.000	Erinaceus_europaeus
ENSCJAG00000002705	-	100	91.860	ENSELUG00000007737	RUXF	86	93.333	Esox_lucius
ENSCJAG00000002705	-	87	94.667	ENSELUG00000003121	RUXF	87	94.667	Esox_lucius
ENSCJAG00000002705	-	98	78.571	ENSFCAG00000031148	-	72	76.923	Felis_catus
ENSCJAG00000002705	-	87	76.000	ENSFCAG00000021942	-	87	76.000	Felis_catus
ENSCJAG00000002705	-	100	100.000	ENSFCAG00000029966	-	100	100.000	Felis_catus
ENSCJAG00000002705	-	99	100.000	ENSFALG00000010799	SNRPF	99	100.000	Ficedula_albicollis
ENSCJAG00000002705	-	100	100.000	ENSFDAG00000002831	-	100	100.000	Fukomys_damarensis
ENSCJAG00000002705	-	99	97.647	ENSFHEG00000003240	snrpf	75	97.647	Fundulus_heteroclitus
ENSCJAG00000002705	-	99	97.647	ENSGMOG00000007741	snrpf	100	97.647	Gadus_morhua
ENSCJAG00000002705	-	100	100.000	ENSGALG00000011409	SNRPF	100	100.000	Gallus_gallus
ENSCJAG00000002705	-	98	97.619	ENSGAFG00000016187	snrpf	97	97.619	Gambusia_affinis
ENSCJAG00000002705	-	99	96.471	ENSGACG00000020055	snrpf	100	96.471	Gasterosteus_aculeatus
ENSCJAG00000002705	-	86	93.243	ENSGAGG00000012945	-	69	94.667	Gopherus_agassizii
ENSCJAG00000002705	-	70	91.667	ENSGAGG00000011163	-	100	91.667	Gopherus_agassizii
ENSCJAG00000002705	-	92	91.139	ENSGAGG00000022991	-	80	94.118	Gopherus_agassizii
ENSCJAG00000002705	-	80	86.957	ENSGAGG00000014132	-	83	86.957	Gopherus_agassizii
ENSCJAG00000002705	-	72	96.774	ENSGAGG00000020974	-	52	96.774	Gopherus_agassizii
ENSCJAG00000002705	-	92	75.949	ENSGGOG00000039564	-	90	74.667	Gorilla_gorilla
ENSCJAG00000002705	-	100	100.000	ENSGGOG00000001127	-	100	100.000	Gorilla_gorilla
ENSCJAG00000002705	-	98	80.952	ENSGGOG00000039936	-	83	78.667	Gorilla_gorilla
ENSCJAG00000002705	-	100	98.837	ENSHGLG00000021172	-	100	98.837	Heterocephalus_glaber_female
ENSCJAG00000002705	-	100	100.000	ENSHGLG00000009108	SNRPF	100	100.000	Heterocephalus_glaber_female
ENSCJAG00000002705	-	99	100.000	ENSHGLG00100008103	-	100	100.000	Heterocephalus_glaber_male
ENSCJAG00000002705	-	100	98.837	ENSHGLG00100019596	-	100	98.837	Heterocephalus_glaber_male
ENSCJAG00000002705	-	73	85.714	ENSHCOG00000018663	snrpf	55	85.714	Hippocampus_comes
ENSCJAG00000002705	-	100	97.674	ENSIPUG00000018994	snrpf	100	97.674	Ictalurus_punctatus
ENSCJAG00000002705	-	100	100.000	ENSSTOG00000010434	-	100	100.000	Ictidomys_tridecemlineatus
ENSCJAG00000002705	-	100	84.884	ENSJJAG00000010502	-	89	86.667	Jaculus_jaculus
ENSCJAG00000002705	-	78	94.030	ENSJJAG00000004828	-	100	94.030	Jaculus_jaculus
ENSCJAG00000002705	-	100	100.000	ENSJJAG00000011272	-	100	100.000	Jaculus_jaculus
ENSCJAG00000002705	-	100	81.395	ENSJJAG00000004558	-	89	82.667	Jaculus_jaculus
ENSCJAG00000002705	-	100	96.512	ENSKMAG00000013566	snrpf	100	96.512	Kryptolebias_marmoratus
ENSCJAG00000002705	-	100	96.512	ENSLBEG00000008800	snrpf	100	96.512	Labrus_bergylta
ENSCJAG00000002705	-	100	98.837	ENSLACG00000002456	-	74	98.837	Latimeria_chalumnae
ENSCJAG00000002705	-	87	94.667	ENSLOCG00000015744	snrpf	87	94.667	Lepisosteus_oculatus
ENSCJAG00000002705	-	99	100.000	ENSLAFG00000017426	SNRPF	99	100.000	Loxodonta_africana
ENSCJAG00000002705	-	98	96.429	ENSMAMG00000016593	snrpf	99	96.429	Mastacembelus_armatus
ENSCJAG00000002705	-	98	97.619	ENSMZEG00005014701	snrpf	99	97.619	Maylandia_zebra
ENSCJAG00000002705	-	98	100.000	ENSMGAG00000011453	-	76	100.000	Meleagris_gallopavo
ENSCJAG00000002705	-	87	94.667	ENSMAUG00000008799	-	87	94.667	Mesocricetus_auratus
ENSCJAG00000002705	-	86	100.000	ENSMAUG00000019737	-	100	100.000	Mesocricetus_auratus
ENSCJAG00000002705	-	97	74.699	ENSMAUG00000010289	-	96	74.699	Mesocricetus_auratus
ENSCJAG00000002705	-	86	100.000	ENSMAUG00000016909	-	100	100.000	Mesocricetus_auratus
ENSCJAG00000002705	-	87	93.333	ENSMICG00000030494	-	60	93.333	Microcebus_murinus
ENSCJAG00000002705	-	100	100.000	ENSMICG00000012153	-	100	100.000	Microcebus_murinus
ENSCJAG00000002705	-	79	83.824	ENSMOCG00000020220	-	87	83.824	Microtus_ochrogaster
ENSCJAG00000002705	-	100	100.000	ENSMOCG00000020437	Snrpf	100	100.000	Microtus_ochrogaster
ENSCJAG00000002705	-	87	85.333	ENSMOCG00000022166	-	82	85.333	Microtus_ochrogaster
ENSCJAG00000002705	-	99	96.471	ENSMMOG00000007127	snrpf	100	96.471	Mola_mola
ENSCJAG00000002705	-	100	100.000	ENSMODG00000008091	SNRPF	75	100.000	Monodelphis_domestica
ENSCJAG00000002705	-	98	97.619	ENSMALG00000012328	snrpf	99	97.619	Monopterus_albus
ENSCJAG00000002705	-	100	100.000	MGP_CAROLIEiJ_G0015735	-	100	100.000	Mus_caroli
ENSCJAG00000002705	-	100	100.000	ENSMUSG00000020018	Snrpf	100	100.000	Mus_musculus
ENSCJAG00000002705	-	100	100.000	MGP_PahariEiJ_G0031350	Snrpf	100	100.000	Mus_pahari
ENSCJAG00000002705	-	100	100.000	MGP_SPRETEiJ_G0016553	Snrpf	100	100.000	Mus_spretus
ENSCJAG00000002705	-	100	100.000	ENSMPUG00000007176	-	77	100.000	Mustela_putorius_furo
ENSCJAG00000002705	-	100	80.233	ENSMLUG00000026269	-	71	78.667	Myotis_lucifugus
ENSCJAG00000002705	-	100	100.000	ENSMLUG00000026149	-	81	100.000	Myotis_lucifugus
ENSCJAG00000002705	-	99	100.000	ENSMLUG00000013577	-	100	100.000	Myotis_lucifugus
ENSCJAG00000002705	-	100	100.000	ENSMLUG00000027932	-	81	100.000	Myotis_lucifugus
ENSCJAG00000002705	-	100	100.000	ENSMLUG00000029201	-	81	100.000	Myotis_lucifugus
ENSCJAG00000002705	-	100	100.000	ENSNGAG00000024292	-	100	100.000	Nannospalax_galili
ENSCJAG00000002705	-	73	90.476	ENSNGAG00000005851	-	71	90.000	Nannospalax_galili
ENSCJAG00000002705	-	99	97.647	ENSNBRG00000011682	snrpf	87	97.647	Neolamprologus_brichardi
ENSCJAG00000002705	-	63	100.000	ENSMEUG00000000671	SNRPF	87	70.270	Notamacropus_eugenii
ENSCJAG00000002705	-	100	100.000	ENSODEG00000010328	-	100	100.000	Octodon_degus
ENSCJAG00000002705	-	100	98.837	ENSOCUG00000010925	SNRPF	76	98.837	Oryctolagus_cuniculus
ENSCJAG00000002705	-	86	94.595	ENSORLG00020008216	snrpf	87	94.595	Oryzias_latipes_hni
ENSCJAG00000002705	-	86	94.595	ENSORLG00015007418	snrpf	87	94.595	Oryzias_latipes_hsok
ENSCJAG00000002705	-	98	96.429	ENSOMEG00000003018	snrpf	99	96.429	Oryzias_melastigma
ENSCJAG00000002705	-	100	97.674	ENSOGAG00000030323	-	100	97.674	Otolemur_garnettii
ENSCJAG00000002705	-	100	100.000	ENSOARG00000011853	-	75	100.000	Ovis_aries
ENSCJAG00000002705	-	92	75.949	ENSPPAG00000037479	-	91	74.667	Pan_paniscus
ENSCJAG00000002705	-	98	80.952	ENSPPAG00000037544	-	83	78.667	Pan_paniscus
ENSCJAG00000002705	-	100	100.000	ENSPPRG00000005875	-	100	100.000	Panthera_pardus
ENSCJAG00000002705	-	98	77.381	ENSPPRG00000007449	-	77	77.333	Panthera_pardus
ENSCJAG00000002705	-	98	79.762	ENSPTIG00000005117	-	89	77.333	Panthera_tigris_altaica
ENSCJAG00000002705	-	100	100.000	ENSPTIG00000007520	SNRPF	100	100.000	Panthera_tigris_altaica
ENSCJAG00000002705	-	98	80.952	ENSPTRG00000043814	-	83	78.667	Pan_troglodytes
ENSCJAG00000002705	-	92	75.949	ENSPTRG00000047717	-	91	74.667	Pan_troglodytes
ENSCJAG00000002705	-	99	97.647	ENSPKIG00000014784	snrpf	93	97.647	Paramormyrops_kingsleyae
ENSCJAG00000002705	-	99	100.000	ENSPSIG00000016462	SNRPF	99	100.000	Pelodiscus_sinensis
ENSCJAG00000002705	-	99	96.471	ENSPMGG00000023548	snrpf	100	96.471	Periophthalmus_magnuspinnatus
ENSCJAG00000002705	-	100	100.000	ENSPEMG00000023326	Snrpf	100	100.000	Peromyscus_maniculatus_bairdii
ENSCJAG00000002705	-	98	97.619	ENSPLAG00000023932	snrpf	99	97.619	Poecilia_latipinna
ENSCJAG00000002705	-	98	97.619	ENSPMEG00000003377	snrpf	99	97.619	Poecilia_mexicana
ENSCJAG00000002705	-	98	97.619	ENSPREG00000022635	snrpf	97	97.619	Poecilia_reticulata
ENSCJAG00000002705	-	100	100.000	ENSPPYG00000004847	-	100	100.000	Pongo_abelii
ENSCJAG00000002705	-	100	100.000	ENSPCOG00000023833	-	100	100.000	Propithecus_coquereli
ENSCJAG00000002705	-	100	100.000	ENSPVAG00000009036	SNRPF	100	100.000	Pteropus_vampyrus
ENSCJAG00000002705	-	98	97.619	ENSPNYG00000021712	snrpf	99	97.619	Pundamilia_nyererei
ENSCJAG00000002705	-	98	96.429	ENSPNAG00000019117	snrpf	99	96.429	Pygocentrus_nattereri
ENSCJAG00000002705	-	100	100.000	ENSRNOG00000005556	Snrpf	100	100.000	Rattus_norvegicus
ENSCJAG00000002705	-	100	96.512	ENSRBIG00000030414	-	100	96.512	Rhinopithecus_bieti
ENSCJAG00000002705	-	100	96.512	ENSRROG00000021975	-	100	96.512	Rhinopithecus_roxellana
ENSCJAG00000002705	-	81	59.155	YPR182W	SMX3	83	59.155	Saccharomyces_cerevisiae
ENSCJAG00000002705	-	100	100.000	ENSSBOG00000036179	-	100	100.000	Saimiri_boliviensis_boliviensis
ENSCJAG00000002705	-	91	80.247	ENSSBOG00000027638	-	91	80.247	Saimiri_boliviensis_boliviensis
ENSCJAG00000002705	-	100	98.837	ENSSBOG00000012868	-	100	98.837	Saimiri_boliviensis_boliviensis
ENSCJAG00000002705	-	87	85.333	ENSSBOG00000032297	-	86	85.333	Saimiri_boliviensis_boliviensis
ENSCJAG00000002705	-	99	100.000	ENSSHAG00000012294	SNRPF	77	100.000	Sarcophilus_harrisii
ENSCJAG00000002705	-	74	96.875	ENSSFOG00015021523	snrpf	96	96.875	Scleropages_formosus
ENSCJAG00000002705	-	87	94.667	ENSSMAG00000005533	snrpf	86	94.667	Scophthalmus_maximus
ENSCJAG00000002705	-	76	96.923	ENSSDUG00000016283	snrpf	77	96.923	Seriola_dumerili
ENSCJAG00000002705	-	93	73.750	ENSSLDG00000003885	-	90	77.027	Seriola_lalandi_dorsalis
ENSCJAG00000002705	-	100	96.512	ENSSLDG00000005119	snrpf	100	96.512	Seriola_lalandi_dorsalis
ENSCJAG00000002705	-	98	100.000	ENSSPUG00000014590	-	99	100.000	Sphenodon_punctatus
ENSCJAG00000002705	-	99	97.647	ENSSPAG00000003283	snrpf	97	97.647	Stegastes_partitus
ENSCJAG00000002705	-	100	100.000	ENSSSCG00000000895	SNRPF	100	100.000	Sus_scrofa
ENSCJAG00000002705	-	67	94.828	ENSTRUG00000014956	snrpf	84	94.828	Takifugu_rubripes
ENSCJAG00000002705	-	100	96.512	ENSTNIG00000012672	snrpf	100	96.512	Tetraodon_nigroviridis
ENSCJAG00000002705	-	64	100.000	ENSTTRG00000006070	SNRPF	87	70.667	Tursiops_truncatus
ENSCJAG00000002705	-	100	87.209	ENSUAMG00000001101	-	88	89.333	Ursus_americanus
ENSCJAG00000002705	-	100	100.000	ENSUAMG00000008176	-	100	100.000	Ursus_americanus
ENSCJAG00000002705	-	100	100.000	ENSUMAG00000003528	-	100	100.000	Ursus_maritimus
ENSCJAG00000002705	-	87	89.333	ENSUMAG00000006177	-	88	89.333	Ursus_maritimus
ENSCJAG00000002705	-	100	100.000	ENSVPAG00000008712	-	100	100.000	Vicugna_pacos
ENSCJAG00000002705	-	91	92.308	ENSVVUG00000023821	-	96	92.000	Vulpes_vulpes
ENSCJAG00000002705	-	64	97.674	ENSXETG00000021630	snrpf	87	75.000	Xenopus_tropicalis
ENSCJAG00000002705	-	98	97.619	ENSXCOG00000013860	snrpf	97	97.619	Xiphophorus_couchianus
ENSCJAG00000002705	-	98	97.619	ENSXMAG00000015448	snrpf	99	97.619	Xiphophorus_maculatus