EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000003138 (Gene tree)
Gene ID: 100395943
Gene Symbol: RIF1
Alias: FLJ10599|FLJ12870
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 62246 bases
Position: chrNTIC01035500.1:72730310-72792555
Accession: 23207
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000052997	Rif1_N	PF12231.8	6.7e-78	1	1
ENSCJAP00000005772	Rif1_N	PF12231.8	6.8e-78	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000075963	RIF1-202	7314	-	ENSCJAP00000052997	2437 (aa)	-	A0A2R8M384
ENSCJAT00000006080	RIF1-201	7392	-	ENSCJAP00000005772	2463 (aa)	-	F7I9U7

Gene Model

Click here to download ENSCJAG00000003138's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000003138's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000003138	RIF1	100	89.814	ENSG00000080345	RIF1	97	95.128	Homo_sapiens
ENSCJAG00000003138	RIF1	99	78.790	ENSAMEG00000008461	RIF1	100	78.750	Ailuropoda_melanoleuca
ENSCJAG00000003138	RIF1	65	49.848	ENSACIG00000017765	rif1	71	49.734	Amphilophus_citrinellus
ENSCJAG00000003138	RIF1	64	49.443	ENSAOCG00000017231	rif1	64	49.283	Amphiprion_ocellaris
ENSCJAG00000003138	RIF1	71	55.394	ENSAPEG00000013228	rif1	64	55.394	Amphiprion_percula
ENSCJAG00000003138	RIF1	65	48.809	ENSATEG00000022887	rif1	68	48.657	Anabas_testudineus
ENSCJAG00000003138	RIF1	84	67.160	ENSAPLG00000007092	RIF1	92	67.160	Anas_platyrhynchos
ENSCJAG00000003138	RIF1	84	58.112	ENSACAG00000003714	RIF1	89	58.112	Anolis_carolinensis
ENSCJAG00000003138	RIF1	100	94.091	ENSANAG00000024840	RIF1	100	94.091	Aotus_nancymaae
ENSCJAG00000003138	RIF1	94	76.718	ENSBTAG00000021020	RIF1	99	76.718	Bos_taurus
ENSCJAG00000003138	RIF1	100	76.942	ENSCAFG00000005670	RIF1	97	77.192	Canis_familiaris
ENSCJAG00000003138	RIF1	100	76.281	ENSCAFG00020016401	RIF1	100	76.532	Canis_lupus_dingo
ENSCJAG00000003138	RIF1	99	77.156	ENSCHIG00000020327	RIF1	99	77.156	Capra_hircus
ENSCJAG00000003138	RIF1	99	78.580	ENSTSYG00000008861	RIF1	100	78.580	Carlito_syrichta
ENSCJAG00000003138	RIF1	79	86.047	ENSCAPG00000008957	RIF1	96	86.047	Cavia_aperea
ENSCJAG00000003138	RIF1	99	70.166	ENSCPOG00000037898	RIF1	99	70.290	Cavia_porcellus
ENSCJAG00000003138	RIF1	100	92.996	ENSCCAG00000024760	RIF1	100	92.996	Cebus_capucinus
ENSCJAG00000003138	RIF1	100	89.527	ENSCATG00000033353	RIF1	100	89.527	Cercocebus_atys
ENSCJAG00000003138	RIF1	96	72.887	ENSCLAG00000001517	RIF1	99	72.803	Chinchilla_lanigera
ENSCJAG00000003138	RIF1	100	89.810	ENSCSAG00000016089	RIF1	100	89.810	Chlorocebus_sabaeus
ENSCJAG00000003138	RIF1	97	79.130	ENSCHOG00000007187	RIF1	97	79.130	Choloepus_hoffmanni
ENSCJAG00000003138	RIF1	89	72.353	ENSCPBG00000025885	RIF1	95	73.529	Chrysemys_picta_bellii
ENSCJAG00000003138	RIF1	100	88.000	ENSCANG00000028962	RIF1	100	89.311	Colobus_angolensis_palliatus
ENSCJAG00000003138	RIF1	99	69.416	ENSCGRG00001024589	Rif1	100	69.497	Cricetulus_griseus_chok1gshd
ENSCJAG00000003138	RIF1	99	70.723	ENSCGRG00000010713	Rif1	100	70.804	Cricetulus_griseus_crigri
ENSCJAG00000003138	RIF1	59	58.079	ENSCSEG00000003945	rif1	66	50.196	Cynoglossus_semilaevis
ENSCJAG00000003138	RIF1	64	48.949	ENSCVAG00000022479	rif1	68	48.872	Cyprinodon_variegatus
ENSCJAG00000003138	RIF1	63	51.675	ENSDARG00000062650	rif1	65	51.229	Danio_rerio
ENSCJAG00000003138	RIF1	99	75.921	ENSDNOG00000011194	RIF1	97	76.002	Dasypus_novemcinctus
ENSCJAG00000003138	RIF1	94	72.252	ENSETEG00000012421	RIF1	94	72.252	Echinops_telfairi
ENSCJAG00000003138	RIF1	93	92.453	ENSEASG00005023434	RIF1	98	91.749	Equus_asinus_asinus
ENSCJAG00000003138	RIF1	97	90.196	ENSECAG00000012679	RIF1	100	90.196	Equus_caballus
ENSCJAG00000003138	RIF1	63	50.753	ENSELUG00000006826	rif1	56	50.826	Esox_lucius
ENSCJAG00000003138	RIF1	100	77.626	ENSFCAG00000029742	RIF1	100	77.787	Felis_catus
ENSCJAG00000003138	RIF1	78	64.438	ENSFALG00000013874	RIF1	90	64.742	Ficedula_albicollis
ENSCJAG00000003138	RIF1	99	74.390	ENSFDAG00000006538	RIF1	99	74.324	Fukomys_damarensis
ENSCJAG00000003138	RIF1	62	50.400	ENSFHEG00000013721	rif1	65	50.278	Fundulus_heteroclitus
ENSCJAG00000003138	RIF1	56	52.273	ENSGMOG00000003517	rif1	85	51.261	Gadus_morhua
ENSCJAG00000003138	RIF1	79	65.294	ENSGALG00000012484	RIF1	91	65.294	Gallus_gallus
ENSCJAG00000003138	RIF1	65	50.080	ENSGAFG00000017196	rif1	68	53.986	Gambusia_affinis
ENSCJAG00000003138	RIF1	60	55.691	ENSGACG00000008579	rif1	65	54.941	Gasterosteus_aculeatus
ENSCJAG00000003138	RIF1	85	72.059	ENSGAGG00000012595	RIF1	93	73.156	Gopherus_agassizii
ENSCJAG00000003138	RIF1	90	95.422	ENSGGOG00000040178	RIF1	96	95.422	Gorilla_gorilla
ENSCJAG00000003138	RIF1	94	74.378	ENSHGLG00100009807	RIF1	99	74.308	Heterocephalus_glaber_male
ENSCJAG00000003138	RIF1	62	49.395	ENSHCOG00000015943	rif1	59	49.120	Hippocampus_comes
ENSCJAG00000003138	RIF1	50	52.994	ENSIPUG00000021703	rif1	50	52.814	Ictalurus_punctatus
ENSCJAG00000003138	RIF1	100	76.464	ENSSTOG00000020712	RIF1	100	76.423	Ictidomys_tridecemlineatus
ENSCJAG00000003138	RIF1	99	68.861	ENSJJAG00000023000	Rif1	100	68.901	Jaculus_jaculus
ENSCJAG00000003138	RIF1	64	49.921	ENSKMAG00000002852	rif1	67	49.921	Kryptolebias_marmoratus
ENSCJAG00000003138	RIF1	62	52.330	ENSLBEG00000023196	rif1	58	52.330	Labrus_bergylta
ENSCJAG00000003138	RIF1	86	61.236	ENSLACG00000005425	RIF1	90	61.236	Latimeria_chalumnae
ENSCJAG00000003138	RIF1	62	54.466	ENSLOCG00000002657	rif1	82	50.161	Lepisosteus_oculatus
ENSCJAG00000003138	RIF1	99	76.532	ENSLAFG00000009796	RIF1	100	76.532	Loxodonta_africana
ENSCJAG00000003138	RIF1	100	89.608	ENSMFAG00000032233	RIF1	100	89.608	Macaca_fascicularis
ENSCJAG00000003138	RIF1	100	89.567	ENSMMUG00000008611	RIF1	100	89.567	Macaca_mulatta
ENSCJAG00000003138	RIF1	100	89.689	ENSMNEG00000031616	RIF1	100	89.689	Macaca_nemestrina
ENSCJAG00000003138	RIF1	100	89.608	ENSMLEG00000042945	RIF1	100	89.608	Mandrillus_leucophaeus
ENSCJAG00000003138	RIF1	65	49.693	ENSMAMG00000001745	rif1	67	49.693	Mastacembelus_armatus
ENSCJAG00000003138	RIF1	64	51.030	ENSMZEG00005020920	rif1	69	50.549	Maylandia_zebra
ENSCJAG00000003138	RIF1	84	60.383	ENSMGAG00000012732	RIF1	92	61.157	Meleagris_gallopavo
ENSCJAG00000003138	RIF1	94	89.415	ENSMAUG00000013158	Rif1	99	89.415	Mesocricetus_auratus
ENSCJAG00000003138	RIF1	100	82.937	ENSMICG00000046127	RIF1	100	82.937	Microcebus_murinus
ENSCJAG00000003138	RIF1	99	69.184	ENSMOCG00000009381	Rif1	100	69.184	Microtus_ochrogaster
ENSCJAG00000003138	RIF1	66	49.516	ENSMMOG00000006519	rif1	68	49.355	Mola_mola
ENSCJAG00000003138	RIF1	100	60.208	ENSMODG00000003703	RIF1	100	60.104	Monodelphis_domestica
ENSCJAG00000003138	RIF1	65	48.863	ENSMALG00000016759	rif1	78	48.983	Monopterus_albus
ENSCJAG00000003138	RIF1	99	68.470	MGP_CAROLIEiJ_G0023555	Rif1	100	68.510	Mus_caroli
ENSCJAG00000003138	RIF1	99	68.742	ENSMUSG00000036202	Rif1	100	68.783	Mus_musculus
ENSCJAG00000003138	RIF1	99	67.340	MGP_PahariEiJ_G0025006	Rif1	100	67.340	Mus_pahari
ENSCJAG00000003138	RIF1	99	68.682	MGP_SPRETEiJ_G0024476	Rif1	100	68.682	Mus_spretus
ENSCJAG00000003138	RIF1	100	78.051	ENSMPUG00000000371	RIF1	100	78.051	Mustela_putorius_furo
ENSCJAG00000003138	RIF1	90	75.527	ENSMLUG00000003376	RIF1	100	75.527	Myotis_lucifugus
ENSCJAG00000003138	RIF1	100	72.200	ENSNGAG00000009268	Rif1	100	72.200	Nannospalax_galili
ENSCJAG00000003138	RIF1	76	46.296	ENSNBRG00000014257	rif1	71	49.239	Neolamprologus_brichardi
ENSCJAG00000003138	RIF1	100	89.223	ENSNLEG00000010955	RIF1	100	89.345	Nomascus_leucogenys
ENSCJAG00000003138	RIF1	81	76.889	ENSMEUG00000007601	-	88	76.889	Notamacropus_eugenii
ENSCJAG00000003138	RIF1	99	70.994	ENSODEG00000003950	RIF1	99	71.273	Octodon_degus
ENSCJAG00000003138	RIF1	63	45.716	ENSONIG00000013657	rif1	54	50.497	Oreochromis_niloticus
ENSCJAG00000003138	RIF1	84	66.788	ENSOANG00000006078	-	56	73.659	Ornithorhynchus_anatinus
ENSCJAG00000003138	RIF1	100	75.998	ENSOCUG00000017435	RIF1	100	76.160	Oryctolagus_cuniculus
ENSCJAG00000003138	RIF1	62	48.320	ENSORLG00020001302	rif1	67	49.354	Oryzias_latipes_hni
ENSCJAG00000003138	RIF1	62	48.909	ENSORLG00015000009	rif1	66	48.909	Oryzias_latipes_hsok
ENSCJAG00000003138	RIF1	64	48.945	ENSOMEG00000021513	rif1	68	48.749	Oryzias_melastigma
ENSCJAG00000003138	RIF1	99	79.266	ENSOGAG00000006141	RIF1	99	79.225	Otolemur_garnettii
ENSCJAG00000003138	RIF1	99	77.075	ENSOARG00000008930	RIF1	99	77.075	Ovis_aries
ENSCJAG00000003138	RIF1	100	89.859	ENSPPAG00000023754	RIF1	100	89.859	Pan_paniscus
ENSCJAG00000003138	RIF1	100	77.554	ENSPPRG00000003618	RIF1	100	77.755	Panthera_pardus
ENSCJAG00000003138	RIF1	100	77.595	ENSPTIG00000020652	RIF1	100	77.796	Panthera_tigris_altaica
ENSCJAG00000003138	RIF1	100	89.939	ENSPTRG00000012534	RIF1	100	89.939	Pan_troglodytes
ENSCJAG00000003138	RIF1	100	89.325	ENSPANG00000008525	RIF1	100	89.325	Papio_anubis
ENSCJAG00000003138	RIF1	64	51.618	ENSPKIG00000004267	rif1	69	51.801	Paramormyrops_kingsleyae
ENSCJAG00000003138	RIF1	65	46.737	ENSPMGG00000016141	rif1	78	45.411	Periophthalmus_magnuspinnatus
ENSCJAG00000003138	RIF1	99	70.815	ENSPEMG00000000446	Rif1	99	70.815	Peromyscus_maniculatus_bairdii
ENSCJAG00000003138	RIF1	99	59.496	ENSPCIG00000009185	RIF1	99	59.543	Phascolarctos_cinereus
ENSCJAG00000003138	RIF1	59	51.182	ENSPFOG00000000554	-	67	51.000	Poecilia_formosa
ENSCJAG00000003138	RIF1	66	51.069	ENSPFOG00000017804	rif1	69	51.111	Poecilia_formosa
ENSCJAG00000003138	RIF1	66	50.915	ENSPLAG00000017945	rif1	80	50.838	Poecilia_latipinna
ENSCJAG00000003138	RIF1	53	49.372	ENSPMEG00000006897	-	66	49.179	Poecilia_mexicana
ENSCJAG00000003138	RIF1	64	50.952	ENSPREG00000018052	rif1	65	54.265	Poecilia_reticulata
ENSCJAG00000003138	RIF1	100	89.895	ENSPPYG00000012846	RIF1	100	90.016	Pongo_abelii
ENSCJAG00000003138	RIF1	83	84.158	ENSPCAG00000009032	RIF1	83	84.158	Procavia_capensis
ENSCJAG00000003138	RIF1	100	82.977	ENSPCOG00000027888	RIF1	100	82.977	Propithecus_coquereli
ENSCJAG00000003138	RIF1	93	88.211	ENSPVAG00000014276	RIF1	95	88.211	Pteropus_vampyrus
ENSCJAG00000003138	RIF1	64	49.408	ENSPNYG00000012940	rif1	68	49.329	Pundamilia_nyererei
ENSCJAG00000003138	RIF1	51	52.573	ENSPNAG00000016685	rif1	52	52.669	Pygocentrus_nattereri
ENSCJAG00000003138	RIF1	99	67.699	ENSRNOG00000054901	Rif1	100	67.699	Rattus_norvegicus
ENSCJAG00000003138	RIF1	100	88.723	ENSRBIG00000003704	RIF1	100	88.844	Rhinopithecus_bieti
ENSCJAG00000003138	RIF1	100	89.693	ENSRROG00000028206	RIF1	100	89.814	Rhinopithecus_roxellana
ENSCJAG00000003138	RIF1	97	98.925	ENSSBOG00000029530	RIF1	100	98.925	Saimiri_boliviensis_boliviensis
ENSCJAG00000003138	RIF1	99	59.737	ENSSHAG00000018552	RIF1	100	58.711	Sarcophilus_harrisii
ENSCJAG00000003138	RIF1	79	49.651	ENSSMAG00000011704	rif1	63	49.204	Scophthalmus_maximus
ENSCJAG00000003138	RIF1	63	50.909	ENSSDUG00000015632	rif1	69	49.697	Seriola_dumerili
ENSCJAG00000003138	RIF1	63	50.678	ENSSLDG00000019531	rif1	66	49.280	Seriola_lalandi_dorsalis
ENSCJAG00000003138	RIF1	61	83.051	ENSSARG00000007161	-	61	83.051	Sorex_araneus
ENSCJAG00000003138	RIF1	88	70.030	ENSSPUG00000003062	RIF1	95	70.030	Sphenodon_punctatus
ENSCJAG00000003138	RIF1	50	57.143	ENSSPAG00000018359	rif1	75	57.143	Stegastes_partitus
ENSCJAG00000003138	RIF1	100	77.760	ENSSSCG00000016395	RIF1	100	77.760	Sus_scrofa
ENSCJAG00000003138	RIF1	64	49.842	ENSTRUG00000015808	rif1	70	49.070	Takifugu_rubripes
ENSCJAG00000003138	RIF1	66	50.755	ENSTNIG00000011538	rif1	70	50.755	Tetraodon_nigroviridis
ENSCJAG00000003138	RIF1	83	89.241	ENSTBEG00000016082	RIF1	81	89.241	Tupaia_belangeri
ENSCJAG00000003138	RIF1	100	78.333	ENSTTRG00000011190	RIF1	100	78.333	Tursiops_truncatus
ENSCJAG00000003138	RIF1	90	77.664	ENSUAMG00000026385	RIF1	99	77.619	Ursus_americanus
ENSCJAG00000003138	RIF1	100	78.695	ENSUMAG00000000337	RIF1	100	78.655	Ursus_maritimus
ENSCJAG00000003138	RIF1	100	76.452	ENSVPAG00000002162	RIF1	100	76.663	Vicugna_pacos
ENSCJAG00000003138	RIF1	100	76.703	ENSVVUG00000011293	RIF1	100	76.784	Vulpes_vulpes
ENSCJAG00000003138	RIF1	87	63.444	ENSXETG00000004530	rif1	87	63.444	Xenopus_tropicalis
ENSCJAG00000003138	RIF1	65	49.449	ENSXMAG00000000506	rif1	66	49.449	Xiphophorus_maculatus