EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000003398 (Gene tree)
Gene ID: 100414538
Gene Symbol: RTCA
Alias: RPC|RTC1|RTCD1
Full Name: RNA 3'-terminal phosphate cyclase
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 21833 bases
Position: chrNTIC01036611.1:13118940-13140772
Accession: 100414538
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000006221	RTC	PF01137.21	7.5e-86	1	1
ENSCJAP00000012580	RTC	PF01137.21	3.4e-70	1	1
ENSCJAP00000012580	RTC_insert	PF05189.13	1.1e-24	1	1
ENSCJAP00000006221	RTC_insert	PF05189.13	1.3e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000006563	RTCA-201	1101	-	ENSCJAP00000006221	366 (aa)	XP_002751183	F7H6I6
ENSCJAT00000013259	RTCA-202	996	-	ENSCJAP00000012580	331 (aa)	XP_009000026	F7GD30

Gene Model

Click here to download ENSCJAG00000003398's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000003398's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000003398	RTCA	100	97.814	ENSG00000137996	RTCA	100	100.000	Homo_sapiens
ENSCJAG00000003398	RTCA	99	71.745	ENSAPOG00000001345	rtca	98	71.745	Acanthochromis_polyacanthus
ENSCJAG00000003398	RTCA	73	94.424	ENSAMEG00000008855	RTCA	100	94.424	Ailuropoda_melanoleuca
ENSCJAG00000003398	RTCA	99	72.022	ENSACIG00000019643	rtca	99	72.022	Amphilophus_citrinellus
ENSCJAG00000003398	RTCA	100	71.038	ENSAOCG00000014979	rtca	99	71.038	Amphiprion_ocellaris
ENSCJAG00000003398	RTCA	100	71.038	ENSAPEG00000006945	rtca	99	71.038	Amphiprion_percula
ENSCJAG00000003398	RTCA	96	72.080	ENSATEG00000006315	rtca	96	72.080	Anabas_testudineus
ENSCJAG00000003398	RTCA	96	79.944	ENSAPLG00000015430	RTCA	100	79.944	Anas_platyrhynchos
ENSCJAG00000003398	RTCA	50	83.636	ENSACAG00000003290	RTCA	94	83.636	Anolis_carolinensis
ENSCJAG00000003398	RTCA	100	98.907	ENSANAG00000025446	RTCA	100	98.907	Aotus_nancymaae
ENSCJAG00000003398	RTCA	100	70.219	ENSACLG00000020770	rtca	99	70.219	Astatotilapia_calliptera
ENSCJAG00000003398	RTCA	100	72.678	ENSAMXG00000043271	rtca	100	72.678	Astyanax_mexicanus
ENSCJAG00000003398	RTCA	100	94.809	ENSBTAG00000006321	RTCA	100	94.809	Bos_taurus
ENSCJAG00000003398	RTCA	100	94.536	ENSCAFG00000020010	RTCA	68	94.536	Canis_familiaris
ENSCJAG00000003398	RTCA	100	94.536	ENSCAFG00020011528	RTCA	57	94.536	Canis_lupus_dingo
ENSCJAG00000003398	RTCA	100	94.536	ENSCHIG00000018937	RTCA	100	94.536	Capra_hircus
ENSCJAG00000003398	RTCA	100	92.623	ENSTSYG00000011305	RTCA	100	92.623	Carlito_syrichta
ENSCJAG00000003398	RTCA	100	98.634	ENSCCAG00000021844	RTCA	100	98.634	Cebus_capucinus
ENSCJAG00000003398	RTCA	100	94.459	ENSCATG00000019364	RTCA	100	97.411	Cercocebus_atys
ENSCJAG00000003398	RTCA	87	94.953	ENSCLAG00000006125	RTCA	100	94.953	Chinchilla_lanigera
ENSCJAG00000003398	RTCA	100	98.087	ENSCSAG00000001509	RTCA	100	98.087	Chlorocebus_sabaeus
ENSCJAG00000003398	RTCA	100	93.169	ENSCHOG00000005211	RTCA	100	93.169	Choloepus_hoffmanni
ENSCJAG00000003398	RTCA	100	82.514	ENSCPBG00000026658	RTCA	100	82.514	Chrysemys_picta_bellii
ENSCJAG00000003398	RTCA	98	55.679	ENSCING00000007875	-	98	55.679	Ciona_intestinalis
ENSCJAG00000003398	RTCA	98	53.889	ENSCSAVG00000007269	-	98	53.889	Ciona_savignyi
ENSCJAG00000003398	RTCA	100	97.814	ENSCANG00000040106	RTCA	100	97.814	Colobus_angolensis_palliatus
ENSCJAG00000003398	RTCA	73	91.078	ENSCGRG00001013163	Rtca	85	91.078	Cricetulus_griseus_chok1gshd
ENSCJAG00000003398	RTCA	99	68.767	ENSCSEG00000000530	rtca	98	68.767	Cynoglossus_semilaevis
ENSCJAG00000003398	RTCA	100	59.290	ENSCVAG00000021809	rtca	100	59.290	Cyprinodon_variegatus
ENSCJAG00000003398	RTCA	100	73.497	ENSDARG00000002215	rtca	100	73.497	Danio_rerio
ENSCJAG00000003398	RTCA	100	93.716	ENSDNOG00000000456	RTCA	100	93.716	Dasypus_novemcinctus
ENSCJAG00000003398	RTCA	100	92.077	ENSDORG00000005448	Rtca	100	92.077	Dipodomys_ordii
ENSCJAG00000003398	RTCA	98	38.268	FBgn0025630	Rtca	98	38.268	Drosophila_melanogaster
ENSCJAG00000003398	RTCA	95	54.237	ENSEBUG00000008556	rtca	97	54.237	Eptatretus_burgeri
ENSCJAG00000003398	RTCA	100	94.262	ENSEASG00005015926	RTCA	100	94.262	Equus_asinus_asinus
ENSCJAG00000003398	RTCA	100	94.262	ENSECAG00000019831	RTCA	100	94.262	Equus_caballus
ENSCJAG00000003398	RTCA	91	82.081	ENSEEUG00000001165	RTCA	100	82.081	Erinaceus_europaeus
ENSCJAG00000003398	RTCA	99	72.022	ENSELUG00000003741	rtca	99	72.022	Esox_lucius
ENSCJAG00000003398	RTCA	100	94.536	ENSFCAG00000024460	RTCA	100	94.536	Felis_catus
ENSCJAG00000003398	RTCA	91	82.883	ENSFALG00000002443	RTCA	90	82.883	Ficedula_albicollis
ENSCJAG00000003398	RTCA	98	74.586	ENSFDAG00000016084	-	100	74.586	Fukomys_damarensis
ENSCJAG00000003398	RTCA	100	95.355	ENSFDAG00000012070	-	100	95.355	Fukomys_damarensis
ENSCJAG00000003398	RTCA	72	61.450	ENSFHEG00000002868	rtca	96	68.142	Fundulus_heteroclitus
ENSCJAG00000003398	RTCA	100	69.126	ENSGMOG00000013264	rtca	100	69.126	Gadus_morhua
ENSCJAG00000003398	RTCA	100	82.787	ENSGALG00000005277	RTCA	100	82.787	Gallus_gallus
ENSCJAG00000003398	RTCA	100	71.311	ENSGAFG00000011853	rtca	99	71.311	Gambusia_affinis
ENSCJAG00000003398	RTCA	100	69.399	ENSGACG00000013497	rtca	100	69.399	Gasterosteus_aculeatus
ENSCJAG00000003398	RTCA	89	83.276	ENSGAGG00000023306	RTCA	100	83.276	Gopherus_agassizii
ENSCJAG00000003398	RTCA	100	97.814	ENSGGOG00000009546	-	100	97.814	Gorilla_gorilla
ENSCJAG00000003398	RTCA	100	96.995	ENSGGOG00000044018	-	100	96.995	Gorilla_gorilla
ENSCJAG00000003398	RTCA	100	69.945	ENSHBUG00000002114	rtca	99	69.945	Haplochromis_burtoni
ENSCJAG00000003398	RTCA	100	93.989	ENSHGLG00000002617	RTCA	100	93.989	Heterocephalus_glaber_female
ENSCJAG00000003398	RTCA	100	93.989	ENSHGLG00100006056	RTCA	100	93.989	Heterocephalus_glaber_male
ENSCJAG00000003398	RTCA	100	64.208	ENSHCOG00000020628	rtca	89	64.208	Hippocampus_comes
ENSCJAG00000003398	RTCA	100	72.951	ENSIPUG00000024803	rtca	100	72.951	Ictalurus_punctatus
ENSCJAG00000003398	RTCA	100	87.705	ENSSTOG00000013528	-	100	87.705	Ictidomys_tridecemlineatus
ENSCJAG00000003398	RTCA	100	82.561	ENSSTOG00000033099	-	100	82.561	Ictidomys_tridecemlineatus
ENSCJAG00000003398	RTCA	100	66.393	ENSJJAG00000016178	Rtca	100	66.393	Jaculus_jaculus
ENSCJAG00000003398	RTCA	99	72.022	ENSKMAG00000006651	rtca	98	72.022	Kryptolebias_marmoratus
ENSCJAG00000003398	RTCA	88	68.847	ENSLBEG00000002448	-	99	68.847	Labrus_bergylta
ENSCJAG00000003398	RTCA	99	69.529	ENSLBEG00000028971	rtca	99	69.529	Labrus_bergylta
ENSCJAG00000003398	RTCA	100	77.869	ENSLACG00000013666	RTCA	100	77.869	Latimeria_chalumnae
ENSCJAG00000003398	RTCA	100	72.678	ENSLOCG00000000093	rtca	99	72.678	Lepisosteus_oculatus
ENSCJAG00000003398	RTCA	100	92.623	ENSLAFG00000001473	RTCA	100	92.623	Loxodonta_africana
ENSCJAG00000003398	RTCA	100	98.087	ENSMFAG00000034132	RTCA	100	98.087	Macaca_fascicularis
ENSCJAG00000003398	RTCA	100	97.541	ENSMMUG00000019105	RTCA	100	97.541	Macaca_mulatta
ENSCJAG00000003398	RTCA	84	97.735	ENSMNEG00000037163	RTCA	100	97.735	Macaca_nemestrina
ENSCJAG00000003398	RTCA	100	88.822	ENSMLEG00000042151	RTCA	100	88.822	Mandrillus_leucophaeus
ENSCJAG00000003398	RTCA	100	73.497	ENSMAMG00000016536	rtca	100	73.497	Mastacembelus_armatus
ENSCJAG00000003398	RTCA	100	70.219	ENSMZEG00005017945	rtca	99	70.219	Maylandia_zebra
ENSCJAG00000003398	RTCA	87	81.191	ENSMGAG00000006892	RTCA	99	81.191	Meleagris_gallopavo
ENSCJAG00000003398	RTCA	100	91.530	ENSMAUG00000008488	Rtca	100	91.530	Mesocricetus_auratus
ENSCJAG00000003398	RTCA	84	95.469	ENSMICG00000008643	RTCA	100	95.469	Microcebus_murinus
ENSCJAG00000003398	RTCA	100	91.530	ENSMOCG00000016660	Rtca	100	91.530	Microtus_ochrogaster
ENSCJAG00000003398	RTCA	84	71.845	ENSMMOG00000007750	rtca	100	71.845	Mola_mola
ENSCJAG00000003398	RTCA	100	89.891	ENSMODG00000003557	RTCA	100	89.891	Monodelphis_domestica
ENSCJAG00000003398	RTCA	100	72.951	ENSMALG00000020844	rtca	100	72.951	Monopterus_albus
ENSCJAG00000003398	RTCA	100	90.984	MGP_CAROLIEiJ_G0025565	Rtca	100	90.984	Mus_caroli
ENSCJAG00000003398	RTCA	100	90.437	ENSMUSG00000000339	Rtca	100	90.845	Mus_musculus
ENSCJAG00000003398	RTCA	100	90.710	MGP_PahariEiJ_G0027011	Rtca	100	90.710	Mus_pahari
ENSCJAG00000003398	RTCA	100	91.257	MGP_SPRETEiJ_G0026515	Rtca	100	91.549	Mus_spretus
ENSCJAG00000003398	RTCA	100	95.082	ENSMPUG00000012119	RTCA	100	95.082	Mustela_putorius_furo
ENSCJAG00000003398	RTCA	100	87.193	ENSMLUG00000009922	RTCA	100	87.193	Myotis_lucifugus
ENSCJAG00000003398	RTCA	100	91.803	ENSNGAG00000011540	Rtca	99	91.803	Nannospalax_galili
ENSCJAG00000003398	RTCA	100	70.219	ENSNBRG00000003062	rtca	99	70.219	Neolamprologus_brichardi
ENSCJAG00000003398	RTCA	100	97.814	ENSNLEG00000031426	RTCA	100	97.814	Nomascus_leucogenys
ENSCJAG00000003398	RTCA	64	95.122	ENSMEUG00000010030	-	77	75.758	Notamacropus_eugenii
ENSCJAG00000003398	RTCA	73	87.361	ENSOPRG00000012092	RTCA	71	87.361	Ochotona_princeps
ENSCJAG00000003398	RTCA	95	94.253	ENSODEG00000006990	RTCA	96	94.302	Octodon_degus
ENSCJAG00000003398	RTCA	100	70.219	ENSONIG00000007753	rtca	99	70.219	Oreochromis_niloticus
ENSCJAG00000003398	RTCA	87	86.435	ENSOANG00000012055	RTCA	98	86.435	Ornithorhynchus_anatinus
ENSCJAG00000003398	RTCA	100	95.082	ENSOCUG00000014247	RTCA	100	95.082	Oryctolagus_cuniculus
ENSCJAG00000003398	RTCA	100	70.492	ENSORLG00000013605	rtca	100	70.492	Oryzias_latipes
ENSCJAG00000003398	RTCA	100	70.492	ENSORLG00020001904	rtca	100	70.492	Oryzias_latipes_hni
ENSCJAG00000003398	RTCA	100	70.492	ENSORLG00015021064	rtca	100	70.492	Oryzias_latipes_hsok
ENSCJAG00000003398	RTCA	100	71.311	ENSOMEG00000000756	rtca	100	71.311	Oryzias_melastigma
ENSCJAG00000003398	RTCA	100	85.246	ENSOGAG00000005627	RTCA	100	85.246	Otolemur_garnettii
ENSCJAG00000003398	RTCA	87	93.396	ENSOARG00000018122	RTCA	100	93.396	Ovis_aries
ENSCJAG00000003398	RTCA	100	93.931	ENSPPAG00000035119	RTCA	100	97.087	Pan_paniscus
ENSCJAG00000003398	RTCA	100	94.536	ENSPPRG00000000350	RTCA	100	94.536	Panthera_pardus
ENSCJAG00000003398	RTCA	100	94.262	ENSPTIG00000012816	RTCA	100	94.262	Panthera_tigris_altaica
ENSCJAG00000003398	RTCA	100	93.931	ENSPTRG00000001004	RTCA	100	97.087	Pan_troglodytes
ENSCJAG00000003398	RTCA	100	97.268	ENSPANG00000000346	RTCA	100	97.268	Papio_anubis
ENSCJAG00000003398	RTCA	100	74.044	ENSPKIG00000001653	rtca	100	74.044	Paramormyrops_kingsleyae
ENSCJAG00000003398	RTCA	100	83.060	ENSPSIG00000011408	RTCA	100	83.060	Pelodiscus_sinensis
ENSCJAG00000003398	RTCA	100	90.710	ENSPEMG00000018582	Rtca	100	90.710	Peromyscus_maniculatus_bairdii
ENSCJAG00000003398	RTCA	100	58.038	ENSPMAG00000009110	rtca	100	58.038	Petromyzon_marinus
ENSCJAG00000003398	RTCA	100	90.164	ENSPCIG00000007684	RTCA	100	90.164	Phascolarctos_cinereus
ENSCJAG00000003398	RTCA	100	71.662	ENSPFOG00000004824	rtca	100	71.662	Poecilia_formosa
ENSCJAG00000003398	RTCA	100	71.858	ENSPLAG00000011753	rtca	99	71.858	Poecilia_latipinna
ENSCJAG00000003398	RTCA	100	71.858	ENSPMEG00000020469	rtca	99	71.858	Poecilia_mexicana
ENSCJAG00000003398	RTCA	100	72.678	ENSPREG00000001365	rtca	99	72.678	Poecilia_reticulata
ENSCJAG00000003398	RTCA	100	97.814	ENSPPYG00000001115	RTCA	100	97.814	Pongo_abelii
ENSCJAG00000003398	RTCA	100	90.164	ENSPCAG00000005076	RTCA	100	90.164	Procavia_capensis
ENSCJAG00000003398	RTCA	100	96.175	ENSPCOG00000005603	RTCA	100	96.175	Propithecus_coquereli
ENSCJAG00000003398	RTCA	100	89.446	ENSPVAG00000009478	RTCA	100	89.446	Pteropus_vampyrus
ENSCJAG00000003398	RTCA	100	70.219	ENSPNYG00000004722	rtca	99	70.219	Pundamilia_nyererei
ENSCJAG00000003398	RTCA	100	73.224	ENSPNAG00000022270	rtca	100	73.224	Pygocentrus_nattereri
ENSCJAG00000003398	RTCA	100	90.437	ENSRNOG00000014575	Rtca	100	90.437	Rattus_norvegicus
ENSCJAG00000003398	RTCA	100	93.931	ENSRBIG00000041180	RTCA	100	96.764	Rhinopithecus_bieti
ENSCJAG00000003398	RTCA	100	97.268	ENSRROG00000024929	RTCA	100	97.268	Rhinopithecus_roxellana
ENSCJAG00000003398	RTCA	100	98.634	ENSSBOG00000028626	RTCA	100	98.634	Saimiri_boliviensis_boliviensis
ENSCJAG00000003398	RTCA	100	89.891	ENSSHAG00000001758	RTCA	100	89.891	Sarcophilus_harrisii
ENSCJAG00000003398	RTCA	98	69.444	ENSSMAG00000014680	rtca	97	69.444	Scophthalmus_maximus
ENSCJAG00000003398	RTCA	98	71.944	ENSSDUG00000015585	rtca	97	71.944	Seriola_dumerili
ENSCJAG00000003398	RTCA	96	72.080	ENSSLDG00000018985	rtca	95	72.080	Seriola_lalandi_dorsalis
ENSCJAG00000003398	RTCA	87	86.120	ENSSARG00000013993	RTCA	100	86.120	Sorex_araneus
ENSCJAG00000003398	RTCA	100	70.492	ENSSPAG00000011938	rtca	99	70.492	Stegastes_partitus
ENSCJAG00000003398	RTCA	100	94.262	ENSSSCG00000006865	RTCA	100	94.262	Sus_scrofa
ENSCJAG00000003398	RTCA	100	83.060	ENSTGUG00000005154	RTCA	100	83.060	Taeniopygia_guttata
ENSCJAG00000003398	RTCA	100	71.311	ENSTRUG00000008799	rtca	100	71.311	Takifugu_rubripes
ENSCJAG00000003398	RTCA	100	71.311	ENSTNIG00000004725	rtca	100	71.311	Tetraodon_nigroviridis
ENSCJAG00000003398	RTCA	59	80.909	ENSTBEG00000000943	RTCA	82	68.067	Tupaia_belangeri
ENSCJAG00000003398	RTCA	100	90.237	ENSTTRG00000015327	RTCA	100	90.237	Tursiops_truncatus
ENSCJAG00000003398	RTCA	94	91.837	ENSUAMG00000017265	RTCA	96	91.837	Ursus_americanus
ENSCJAG00000003398	RTCA	100	93.989	ENSUMAG00000007881	RTCA	100	93.989	Ursus_maritimus
ENSCJAG00000003398	RTCA	87	84.543	ENSVPAG00000001039	RTCA	84	84.543	Vicugna_pacos
ENSCJAG00000003398	RTCA	100	94.562	ENSVVUG00000022041	RTCA	68	94.262	Vulpes_vulpes
ENSCJAG00000003398	RTCA	99	65.123	ENSXETG00000031661	RTCA	99	65.123	Xenopus_tropicalis
ENSCJAG00000003398	RTCA	100	62.295	ENSXCOG00000008002	rtca	100	62.295	Xiphophorus_couchianus
ENSCJAG00000003398	RTCA	100	71.585	ENSXMAG00000005482	rtca	99	71.585	Xiphophorus_maculatus