EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000003665 (Gene tree)
Gene ID: 100385809
Gene Symbol: PABPC5
Alias: PABP5
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 1149 bases
Position: chrNTIC01038833.1:37271083-37272231
Accession: 100385809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000045701	RRM_5	PF13893.6	8.1e-13	1	2
ENSCJAP00000045701	RRM_5	PF13893.6	8.1e-13	2	2
ENSCJAP00000045701	RRM_1	PF00076.22	1.1e-77	1	4
ENSCJAP00000045701	RRM_1	PF00076.22	1.1e-77	2	4
ENSCJAP00000045701	RRM_1	PF00076.22	1.1e-77	3	4
ENSCJAP00000045701	RRM_1	PF00076.22	1.1e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000053877	PABPC5-201	1149	-	ENSCJAP00000045701	382 (aa)	XP_002763106	Q95M35

Gene Model

Click here to download ENSCJAG00000003665's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03013	RNA transport	KEGG
cjc03015	mRNA surveillance pathway	KEGG
cjc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000003665's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000003665	PABPC5	97	37.037	ENSCJAG00000013725	ELAVL4	65	40.278
ENSCJAG00000003665	PABPC5	96	59.229	ENSCJAG00000017628	PABPC1L	61	59.270
ENSCJAG00000003665	PABPC5	93	60.204	ENSCJAG00000041326	-	98	59.896
ENSCJAG00000003665	PABPC5	74	30.508	ENSCJAG00000009717	TRNAU1AP	58	30.409
ENSCJAG00000003665	PABPC5	95	59.780	ENSCJAG00000045282	-	67	59.610
ENSCJAG00000003665	PABPC5	97	63.342	ENSCJAG00000041162	-	73	64.326
ENSCJAG00000003665	PABPC5	94	66.467	ENSCJAG00000038506	-	95	67.500
ENSCJAG00000003665	PABPC5	73	63.025	ENSCJAG00000045953	-	52	63.025
ENSCJAG00000003665	PABPC5	83	32.335	ENSCJAG00000036744	NONO	51	33.333
ENSCJAG00000003665	PABPC5	98	64.960	ENSCJAG00000015833	PABPC1	58	66.011
ENSCJAG00000003665	PABPC5	99	60.106	ENSCJAG00000045332	PABPC4L	84	60.674
ENSCJAG00000003665	PABPC5	96	66.942	ENSCJAG00000002512	-	60	67.135
ENSCJAG00000003665	PABPC5	94	35.802	ENSCJAG00000008064	ELAVL2	88	35.802

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000003665	PABPC5	100	99.476	ENSG00000174740	PABPC5	100	99.476	Homo_sapiens
ENSCJAG00000003665	PABPC5	99	96.850	ENSAMEG00000020114	PABPC5	100	96.850	Ailuropoda_melanoleuca
ENSCJAG00000003665	PABPC5	100	99.476	ENSANAG00000005063	PABPC5	100	99.476	Aotus_nancymaae
ENSCJAG00000003665	PABPC5	99	96.325	ENSBTAG00000019942	PABPC5	99	96.325	Bos_taurus
ENSCJAG00000003665	PABPC5	99	96.588	ENSCAFG00000017452	PABPC5	99	96.588	Canis_familiaris
ENSCJAG00000003665	PABPC5	99	96.325	ENSCHIG00000019004	PABPC5	99	96.325	Capra_hircus
ENSCJAG00000003665	PABPC5	99	97.375	ENSTSYG00000036351	PABPC5	99	97.375	Carlito_syrichta
ENSCJAG00000003665	PABPC5	99	88.421	ENSCAPG00000010714	PABPC5	99	88.421	Cavia_aperea
ENSCJAG00000003665	PABPC5	99	94.488	ENSCPOG00000002555	PABPC5	99	94.488	Cavia_porcellus
ENSCJAG00000003665	PABPC5	100	99.476	ENSCCAG00000032154	PABPC5	100	99.476	Cebus_capucinus
ENSCJAG00000003665	PABPC5	100	99.215	ENSCATG00000043083	PABPC5	100	99.215	Cercocebus_atys
ENSCJAG00000003665	PABPC5	99	96.325	ENSCLAG00000000647	PABPC5	99	96.325	Chinchilla_lanigera
ENSCJAG00000003665	PABPC5	100	99.215	ENSCSAG00000000065	PABPC5	100	99.215	Chlorocebus_sabaeus
ENSCJAG00000003665	PABPC5	100	99.215	ENSCANG00000011473	PABPC5	100	99.215	Colobus_angolensis_palliatus
ENSCJAG00000003665	PABPC5	99	93.701	ENSCGRG00000018699	Pabpc5	99	93.701	Cricetulus_griseus_crigri
ENSCJAG00000003665	PABPC5	99	78.272	ENSETEG00000011832	PABPC5	99	78.272	Echinops_telfairi
ENSCJAG00000003665	PABPC5	99	97.113	ENSEASG00005014396	PABPC5	99	97.113	Equus_asinus_asinus
ENSCJAG00000003665	PABPC5	99	97.113	ENSECAG00000003452	PABPC5	99	97.113	Equus_caballus
ENSCJAG00000003665	PABPC5	99	96.588	ENSFCAG00000004998	PABPC5	99	96.588	Felis_catus
ENSCJAG00000003665	PABPC5	99	96.063	ENSFDAG00000000126	PABPC5	99	96.063	Fukomys_damarensis
ENSCJAG00000003665	PABPC5	100	99.476	ENSGGOG00000007622	PABPC5	100	99.476	Gorilla_gorilla
ENSCJAG00000003665	PABPC5	95	95.853	ENSJJAG00000011960	Pabpc5	99	95.853	Jaculus_jaculus
ENSCJAG00000003665	PABPC5	100	99.215	ENSMFAG00000024561	PABPC5	100	99.215	Macaca_fascicularis
ENSCJAG00000003665	PABPC5	100	99.215	ENSMMUG00000011562	PABPC5	100	99.215	Macaca_mulatta
ENSCJAG00000003665	PABPC5	100	99.215	ENSMNEG00000037604	PABPC5	100	99.215	Macaca_nemestrina
ENSCJAG00000003665	PABPC5	100	99.215	ENSMLEG00000028318	PABPC5	100	99.215	Mandrillus_leucophaeus
ENSCJAG00000003665	PABPC5	99	96.063	ENSMICG00000041706	PABPC5	99	96.063	Microcebus_murinus
ENSCJAG00000003665	PABPC5	99	95.013	ENSMOCG00000001554	Pabpc5	99	95.013	Microtus_ochrogaster
ENSCJAG00000003665	PABPC5	99	94.459	MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.459	Mus_caroli
ENSCJAG00000003665	PABPC5	99	94.987	ENSMUSG00000034732	Pabpc5	99	94.987	Mus_musculus
ENSCJAG00000003665	PABPC5	99	95.276	MGP_PahariEiJ_G0031908	Pabpc5	99	95.276	Mus_pahari
ENSCJAG00000003665	PABPC5	99	94.987	MGP_SPRETEiJ_G0034533	Pabpc5	99	94.987	Mus_spretus
ENSCJAG00000003665	PABPC5	99	96.063	ENSMPUG00000018465	PABPC5	99	96.063	Mustela_putorius_furo
ENSCJAG00000003665	PABPC5	99	95.538	ENSMLUG00000008244	PABPC5	99	95.538	Myotis_lucifugus
ENSCJAG00000003665	PABPC5	95	94.931	ENSNGAG00000004371	Pabpc5	99	94.931	Nannospalax_galili
ENSCJAG00000003665	PABPC5	100	99.476	ENSNLEG00000035086	PABPC5	100	99.476	Nomascus_leucogenys
ENSCJAG00000003665	PABPC5	98	96.833	ENSOPRG00000000856	PABPC5	100	96.833	Ochotona_princeps
ENSCJAG00000003665	PABPC5	99	97.375	ENSOCUG00000010919	PABPC5	99	97.375	Oryctolagus_cuniculus
ENSCJAG00000003665	PABPC5	99	96.325	ENSOGAG00000006882	PABPC5	99	96.325	Otolemur_garnettii
ENSCJAG00000003665	PABPC5	99	96.588	ENSOARG00000010260	PABPC5	99	96.588	Ovis_aries
ENSCJAG00000003665	PABPC5	100	99.215	ENSPPAG00000007378	PABPC5	100	99.215	Pan_paniscus
ENSCJAG00000003665	PABPC5	99	96.588	ENSPPRG00000010742	PABPC5	99	96.588	Panthera_pardus
ENSCJAG00000003665	PABPC5	99	96.588	ENSPTIG00000001480	PABPC5	99	96.588	Panthera_tigris_altaica
ENSCJAG00000003665	PABPC5	100	99.476	ENSPTRG00000022078	PABPC5	100	99.476	Pan_troglodytes
ENSCJAG00000003665	PABPC5	100	99.215	ENSPANG00000018282	PABPC5	100	99.215	Papio_anubis
ENSCJAG00000003665	PABPC5	99	94.488	ENSPEMG00000000171	Pabpc5	99	94.488	Peromyscus_maniculatus_bairdii
ENSCJAG00000003665	PABPC5	100	99.476	ENSPPYG00000020526	PABPC5	100	99.476	Pongo_abelii
ENSCJAG00000003665	PABPC5	99	97.091	ENSPCAG00000015577	PABPC5	100	97.091	Procavia_capensis
ENSCJAG00000003665	PABPC5	99	96.850	ENSPCOG00000000676	PABPC5	99	96.850	Propithecus_coquereli
ENSCJAG00000003665	PABPC5	99	96.850	ENSPVAG00000006465	PABPC5	99	96.850	Pteropus_vampyrus
ENSCJAG00000003665	PABPC5	99	95.013	ENSRNOG00000003354	Pabpc5	99	95.013	Rattus_norvegicus
ENSCJAG00000003665	PABPC5	100	99.215	ENSRBIG00000011760	PABPC5	100	99.215	Rhinopithecus_bieti
ENSCJAG00000003665	PABPC5	100	99.215	ENSRROG00000036708	PABPC5	100	99.215	Rhinopithecus_roxellana
ENSCJAG00000003665	PABPC5	100	99.215	ENSSBOG00000008658	PABPC5	100	99.215	Saimiri_boliviensis_boliviensis
ENSCJAG00000003665	PABPC5	99	93.701	ENSSARG00000014012	PABPC5	99	93.701	Sorex_araneus
ENSCJAG00000003665	PABPC5	99	96.850	ENSSSCG00000040194	PABPC5	99	96.850	Sus_scrofa
ENSCJAG00000003665	PABPC5	99	97.900	ENSTBEG00000016482	PABPC5	99	97.900	Tupaia_belangeri
ENSCJAG00000003665	PABPC5	99	96.325	ENSUAMG00000013627	PABPC5	99	96.325	Ursus_americanus
ENSCJAG00000003665	PABPC5	99	96.063	ENSUMAG00000023934	PABPC5	99	96.063	Ursus_maritimus
ENSCJAG00000003665	PABPC5	99	96.850	ENSVPAG00000001063	PABPC5	99	96.850	Vicugna_pacos
ENSCJAG00000003665	PABPC5	99	96.588	ENSVVUG00000013172	PABPC5	99	96.588	Vulpes_vulpes