EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000004041 (Gene tree)
Gene ID: 100389616
Gene Symbol: GAR1
Alias: NOLA1
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 8234 bases
Position: chrNTIC01033278.1:58048397-58056630
Accession: 14264
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000007347	Gar1	PF04410.14	1.3e-38	1	1
ENSCJAP00000062806	Gar1	PF04410.14	1.6e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000007764	GAR1-201	657	-	ENSCJAP00000007347	218 (aa)	-	F6RKS9
ENSCJAT00000076210	GAR1-202	720	-	ENSCJAP00000062806	239 (aa)	-	A0A2R8MNQ1

Gene Model

Click here to download ENSCJAG00000004041's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000004041's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000004041	GAR1	100	98.624	ENSG00000109534	GAR1	100	98.624	Homo_sapiens
ENSCJAG00000004041	GAR1	67	86.897	ENSAPOG00000019754	gar1	50	94.393	Acanthochromis_polyacanthus
ENSCJAG00000004041	GAR1	50	98.165	ENSAMEG00000004605	GAR1	53	98.165	Ailuropoda_melanoleuca
ENSCJAG00000004041	GAR1	100	99.541	ENSANAG00000021608	GAR1	100	99.541	Aotus_nancymaae
ENSCJAG00000004041	GAR1	50	99.083	ENSBTAG00000000748	GAR1	52	99.083	Bos_taurus
ENSCJAG00000004041	GAR1	64	54.286	WBGene00022046	Y66H1A.4	64	50.000	Caenorhabditis_elegans
ENSCJAG00000004041	GAR1	50	99.091	ENSCHIG00000016026	-	52	99.083	Capra_hircus
ENSCJAG00000004041	GAR1	60	81.944	ENSTSYG00000026632	-	56	91.743	Carlito_syrichta
ENSCJAG00000004041	GAR1	50	100.000	ENSTSYG00000013668	-	51	100.000	Carlito_syrichta
ENSCJAG00000004041	GAR1	50	99.091	ENSCPOG00000004216	GAR1	50	99.083	Cavia_porcellus
ENSCJAG00000004041	GAR1	100	99.541	ENSCCAG00000029372	GAR1	100	99.541	Cebus_capucinus
ENSCJAG00000004041	GAR1	100	98.165	ENSCATG00000021854	GAR1	100	98.165	Cercocebus_atys
ENSCJAG00000004041	GAR1	50	97.273	ENSCLAG00000005335	GAR1	99	94.937	Chinchilla_lanigera
ENSCJAG00000004041	GAR1	89	96.923	ENSCSAG00000003922	GAR1	98	96.923	Chlorocebus_sabaeus
ENSCJAG00000004041	GAR1	53	99.138	ENSCHOG00000007484	-	51	99.138	Choloepus_hoffmanni
ENSCJAG00000004041	GAR1	100	97.248	ENSCANG00000039262	GAR1	100	97.248	Colobus_angolensis_palliatus
ENSCJAG00000004041	GAR1	50	99.083	ENSDNOG00000037632	GAR1	55	99.083	Dasypus_novemcinctus
ENSCJAG00000004041	GAR1	66	92.361	ENSDORG00000000482	Gar1	50	96.330	Dipodomys_ordii
ENSCJAG00000004041	GAR1	50	98.182	ENSEASG00005004658	GAR1	50	98.165	Equus_asinus_asinus
ENSCJAG00000004041	GAR1	50	99.091	ENSECAG00000013624	GAR1	55	99.083	Equus_caballus
ENSCJAG00000004041	GAR1	59	60.000	ENSFCAG00000025841	-	57	63.866	Felis_catus
ENSCJAG00000004041	GAR1	50	99.083	ENSFCAG00000040791	-	52	99.083	Felis_catus
ENSCJAG00000004041	GAR1	51	91.892	ENSFHEG00000008068	gar1	50	93.458	Fundulus_heteroclitus
ENSCJAG00000004041	GAR1	100	98.165	ENSGGOG00000008681	GAR1	100	98.165	Gorilla_gorilla
ENSCJAG00000004041	GAR1	51	80.180	ENSGGOG00000036205	-	54	80.734	Gorilla_gorilla
ENSCJAG00000004041	GAR1	50	90.000	ENSIPUG00000003194	gar1	51	91.589	Ictalurus_punctatus
ENSCJAG00000004041	GAR1	50	97.248	ENSSTOG00000005577	GAR1	71	96.364	Ictidomys_tridecemlineatus
ENSCJAG00000004041	GAR1	51	89.189	ENSKMAG00000010402	gar1	51	91.589	Kryptolebias_marmoratus
ENSCJAG00000004041	GAR1	79	84.298	ENSLACG00000003306	GAR1	65	87.037	Latimeria_chalumnae
ENSCJAG00000004041	GAR1	58	84.252	ENSLOCG00000011711	GAR1	79	83.333	Lepisosteus_oculatus
ENSCJAG00000004041	GAR1	50	84.259	ENSMFAG00000003572	-	53	83.486	Macaca_fascicularis
ENSCJAG00000004041	GAR1	100	98.165	ENSMFAG00000024592	GAR1	100	98.165	Macaca_fascicularis
ENSCJAG00000004041	GAR1	100	98.165	ENSMMUG00000021225	GAR1	100	98.165	Macaca_mulatta
ENSCJAG00000004041	GAR1	100	98.165	ENSMNEG00000042594	GAR1	100	98.165	Macaca_nemestrina
ENSCJAG00000004041	GAR1	99	97.685	ENSMLEG00000002496	GAR1	99	97.685	Mandrillus_leucophaeus
ENSCJAG00000004041	GAR1	50	96.330	ENSMAUG00000016788	Gar1	70	98.182	Mesocricetus_auratus
ENSCJAG00000004041	GAR1	51	98.214	ENSMICG00000003326	GAR1	50	99.083	Microcebus_murinus
ENSCJAG00000004041	GAR1	50	95.413	ENSMOCG00000001340	Gar1	70	100.000	Microtus_ochrogaster
ENSCJAG00000004041	GAR1	50	96.330	MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	Mus_caroli
ENSCJAG00000004041	GAR1	59	87.500	ENSMUSG00000028010	Gar1	70	100.000	Mus_musculus
ENSCJAG00000004041	GAR1	88	92.228	MGP_PahariEiJ_G0027076	Gar1	100	94.149	Mus_pahari
ENSCJAG00000004041	GAR1	59	87.500	MGP_SPRETEiJ_G0026580	Gar1	70	100.000	Mus_spretus
ENSCJAG00000004041	GAR1	100	92.727	ENSMPUG00000008615	GAR1	52	99.083	Mustela_putorius_furo
ENSCJAG00000004041	GAR1	100	93.750	ENSMLUG00000003776	GAR1	100	93.750	Myotis_lucifugus
ENSCJAG00000004041	GAR1	50	98.182	ENSNGAG00000008268	Gar1	92	98.592	Nannospalax_galili
ENSCJAG00000004041	GAR1	100	96.789	ENSNLEG00000016578	GAR1	100	96.789	Nomascus_leucogenys
ENSCJAG00000004041	GAR1	51	83.784	ENSNLEG00000034282	-	55	83.486	Nomascus_leucogenys
ENSCJAG00000004041	GAR1	50	99.083	ENSOCUG00000003901	GAR1	51	99.083	Oryctolagus_cuniculus
ENSCJAG00000004041	GAR1	69	82.667	ENSORLG00000020583	gar1	62	89.706	Oryzias_latipes
ENSCJAG00000004041	GAR1	69	82.667	ENSORLG00020008602	gar1	62	89.706	Oryzias_latipes_hni
ENSCJAG00000004041	GAR1	69	82.667	ENSORLG00015017643	gar1	62	89.706	Oryzias_latipes_hsok
ENSCJAG00000004041	GAR1	69	82.667	ENSOMEG00000007911	GAR1	50	89.706	Oryzias_melastigma
ENSCJAG00000004041	GAR1	50	99.083	ENSOGAG00000004693	GAR1	51	99.083	Otolemur_garnettii
ENSCJAG00000004041	GAR1	50	99.083	ENSOARG00000004910	GAR1	52	99.083	Ovis_aries
ENSCJAG00000004041	GAR1	100	98.174	ENSPPAG00000014081	GAR1	100	98.174	Pan_paniscus
ENSCJAG00000004041	GAR1	100	92.727	ENSPPRG00000023697	GAR1	52	99.083	Panthera_pardus
ENSCJAG00000004041	GAR1	100	92.727	ENSPTIG00000021565	GAR1	83	93.122	Panthera_tigris_altaica
ENSCJAG00000004041	GAR1	100	98.165	ENSPTRG00000016364	GAR1	100	98.165	Pan_troglodytes
ENSCJAG00000004041	GAR1	73	81.651	ENSPTRG00000049340	-	70	76.027	Pan_troglodytes
ENSCJAG00000004041	GAR1	100	98.165	ENSPANG00000000639	GAR1	100	98.165	Papio_anubis
ENSCJAG00000004041	GAR1	50	96.330	ENSPEMG00000015838	Gar1	70	98.182	Peromyscus_maniculatus_bairdii
ENSCJAG00000004041	GAR1	50	92.593	ENSPCIG00000018912	GAR1	57	86.029	Phascolarctos_cinereus
ENSCJAG00000004041	GAR1	100	98.165	ENSPPYG00000014996	GAR1	100	98.165	Pongo_abelii
ENSCJAG00000004041	GAR1	78	95.322	ENSRNOG00000061146	Gar1	100	95.322	Rattus_norvegicus
ENSCJAG00000004041	GAR1	51	82.143	ENSRBIG00000042411	-	53	81.651	Rhinopithecus_bieti
ENSCJAG00000004041	GAR1	100	97.706	ENSRBIG00000019547	GAR1	100	97.706	Rhinopithecus_bieti
ENSCJAG00000004041	GAR1	100	98.165	ENSRROG00000028454	GAR1	100	98.165	Rhinopithecus_roxellana
ENSCJAG00000004041	GAR1	51	82.143	ENSRROG00000044348	-	52	81.651	Rhinopithecus_roxellana
ENSCJAG00000004041	GAR1	100	96.364	ENSSBOG00000024785	GAR1	100	96.364	Saimiri_boliviensis_boliviensis
ENSCJAG00000004041	GAR1	77	88.690	ENSSSCG00000009137	GAR1	54	99.083	Sus_scrofa
ENSCJAG00000004041	GAR1	86	93.651	ENSUAMG00000005652	GAR1	94	93.651	Ursus_americanus
ENSCJAG00000004041	GAR1	100	92.273	ENSUMAG00000000776	GAR1	100	92.273	Ursus_maritimus
ENSCJAG00000004041	GAR1	100	92.727	ENSVVUG00000017612	GAR1	100	92.727	Vulpes_vulpes