EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000004554 (Gene tree)
Gene ID: 100408755
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 80423 bases
Position: chrNTIC01034389.1:149932535-150012957
Accession: 100408755
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000008291	RRM_1	PF00076.22	3.4e-32	1	2
ENSCJAP00000008291	RRM_1	PF00076.22	3.4e-32	2	2
ENSCJAP00000008299	RRM_1	PF00076.22	3.7e-32	1	2
ENSCJAP00000008299	RRM_1	PF00076.22	3.7e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000008771	PSPC1-201	4240	-	ENSCJAP00000008299	521 (aa)	XP_008996236	F7I3U8
ENSCJAT00000008763	PSPC1-202	1491	-	ENSCJAP00000008291	496 (aa)	-	F7I633

Gene Model

Click here to download ENSCJAG00000004554's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000004554's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000004554	PSPC1	90	58.038	ENSCJAG00000001431	SFPQ	54	66.408
ENSCJAG00000004554	PSPC1	91	58.861	ENSCJAG00000036744	NONO	94	72.185

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000004554	PSPC1	100	98.853	ENSG00000121390	PSPC1	100	98.853	Homo_sapiens
ENSCJAG00000004554	PSPC1	88	70.860	ENSAPOG00000015946	pspc1	87	69.392	Acanthochromis_polyacanthus
ENSCJAG00000004554	PSPC1	100	98.656	ENSAMEG00000017420	PSPC1	100	98.656	Ailuropoda_melanoleuca
ENSCJAG00000004554	PSPC1	99	59.693	ENSACIG00000018695	pspc1	100	58.462	Amphilophus_citrinellus
ENSCJAG00000004554	PSPC1	88	69.937	ENSAOCG00000005279	pspc1	87	68.750	Amphiprion_ocellaris
ENSCJAG00000004554	PSPC1	88	71.064	ENSAPEG00000015927	pspc1	88	68.750	Amphiprion_percula
ENSCJAG00000004554	PSPC1	97	60.314	ENSATEG00000004878	pspc1	86	60.044	Anabas_testudineus
ENSCJAG00000004554	PSPC1	89	60.730	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSCJAG00000004554	PSPC1	77	93.812	ENSAPLG00000006246	PSPC1	100	93.812	Anas_platyrhynchos
ENSCJAG00000004554	PSPC1	99	83.117	ENSACAG00000002093	PSPC1	99	84.762	Anolis_carolinensis
ENSCJAG00000004554	PSPC1	90	52.500	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSCJAG00000004554	PSPC1	100	99.616	ENSANAG00000000059	PSPC1	100	99.616	Aotus_nancymaae
ENSCJAG00000004554	PSPC1	99	57.491	ENSACLG00000027220	pspc1	100	54.820	Astatotilapia_calliptera
ENSCJAG00000004554	PSPC1	99	63.736	ENSAMXG00000036881	pspc1	83	71.681	Astyanax_mexicanus
ENSCJAG00000004554	PSPC1	100	95.969	ENSBTAG00000003934	PSPC1	100	95.969	Bos_taurus
ENSCJAG00000004554	PSPC1	100	98.848	ENSCAFG00020002009	PSPC1	100	98.848	Canis_lupus_dingo
ENSCJAG00000004554	PSPC1	100	95.969	ENSCHIG00000016708	PSPC1	100	95.969	Capra_hircus
ENSCJAG00000004554	PSPC1	79	90.686	ENSTSYG00000032882	PSPC1	93	90.686	Carlito_syrichta
ENSCJAG00000004554	PSPC1	100	97.313	ENSCPOG00000000395	PSPC1	100	97.313	Cavia_porcellus
ENSCJAG00000004554	PSPC1	100	99.616	ENSCCAG00000033498	PSPC1	100	99.616	Cebus_capucinus
ENSCJAG00000004554	PSPC1	100	98.470	ENSCATG00000036434	PSPC1	100	98.470	Cercocebus_atys
ENSCJAG00000004554	PSPC1	88	87.905	ENSCLAG00000005241	PSPC1	99	87.905	Chinchilla_lanigera
ENSCJAG00000004554	PSPC1	100	91.396	ENSCHOG00000008913	PSPC1	100	91.013	Choloepus_hoffmanni
ENSCJAG00000004554	PSPC1	99	86.692	ENSCPBG00000020859	PSPC1	99	87.838	Chrysemys_picta_bellii
ENSCJAG00000004554	PSPC1	59	58.766	ENSCSAVG00000003533	-	57	58.553	Ciona_savignyi
ENSCJAG00000004554	PSPC1	77	91.579	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSCJAG00000004554	PSPC1	100	97.514	ENSCGRG00001018368	Pspc1	100	97.514	Cricetulus_griseus_chok1gshd
ENSCJAG00000004554	PSPC1	100	97.514	ENSCGRG00000011724	Pspc1	100	97.514	Cricetulus_griseus_crigri
ENSCJAG00000004554	PSPC1	87	66.307	ENSCVAG00000007679	-	92	62.173	Cyprinodon_variegatus
ENSCJAG00000004554	PSPC1	99	66.479	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSCJAG00000004554	PSPC1	100	96.750	ENSDNOG00000011078	PSPC1	100	96.750	Dasypus_novemcinctus
ENSCJAG00000004554	PSPC1	100	94.455	ENSDORG00000016050	Pspc1	100	93.881	Dipodomys_ordii
ENSCJAG00000004554	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSCJAG00000004554	PSPC1	88	59.504	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSCJAG00000004554	PSPC1	62	45.087	ENSEBUG00000010133	pspc1	82	47.302	Eptatretus_burgeri
ENSCJAG00000004554	PSPC1	100	97.889	ENSEASG00005000119	PSPC1	100	97.889	Equus_asinus_asinus
ENSCJAG00000004554	PSPC1	100	97.889	ENSECAG00000017286	PSPC1	100	97.889	Equus_caballus
ENSCJAG00000004554	PSPC1	92	82.812	ENSEEUG00000011288	-	88	82.500	Erinaceus_europaeus
ENSCJAG00000004554	PSPC1	99	65.867	ENSELUG00000003746	pspc1	94	72.564	Esox_lucius
ENSCJAG00000004554	PSPC1	100	98.848	ENSFCAG00000027841	PSPC1	100	98.848	Felis_catus
ENSCJAG00000004554	PSPC1	89	94.647	ENSFALG00000008750	PSPC1	99	87.763	Ficedula_albicollis
ENSCJAG00000004554	PSPC1	100	95.202	ENSFDAG00000002617	PSPC1	100	95.202	Fukomys_damarensis
ENSCJAG00000004554	PSPC1	88	66.524	ENSGMOG00000015074	pspc1	86	65.659	Gadus_morhua
ENSCJAG00000004554	PSPC1	99	87.476	ENSGALG00000017142	PSPC1	99	88.632	Gallus_gallus
ENSCJAG00000004554	PSPC1	62	78.154	ENSGAFG00000006327	pspc1	67	78.154	Gambusia_affinis
ENSCJAG00000004554	PSPC1	88	65.733	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSCJAG00000004554	PSPC1	92	59.420	ENSGAGG00000017325	-	58	66.841	Gopherus_agassizii
ENSCJAG00000004554	PSPC1	99	88.077	ENSGAGG00000019164	PSPC1	99	87.838	Gopherus_agassizii
ENSCJAG00000004554	PSPC1	100	98.662	ENSGGOG00000003414	PSPC1	100	98.662	Gorilla_gorilla
ENSCJAG00000004554	PSPC1	99	64.325	ENSHBUG00000001139	pspc1	100	63.586	Haplochromis_burtoni
ENSCJAG00000004554	PSPC1	100	97.313	ENSHGLG00000018811	PSPC1	100	97.313	Heterocephalus_glaber_female
ENSCJAG00000004554	PSPC1	67	93.103	ENSHGLG00100007962	PSPC1	100	93.103	Heterocephalus_glaber_male
ENSCJAG00000004554	PSPC1	79	67.067	ENSHCOG00000013251	pspc1	92	65.942	Hippocampus_comes
ENSCJAG00000004554	PSPC1	99	67.730	ENSIPUG00000013192	pspc1	100	67.355	Ictalurus_punctatus
ENSCJAG00000004554	PSPC1	100	97.897	ENSSTOG00000026833	PSPC1	100	97.897	Ictidomys_tridecemlineatus
ENSCJAG00000004554	PSPC1	100	97.323	ENSJJAG00000018334	Pspc1	100	97.323	Jaculus_jaculus
ENSCJAG00000004554	PSPC1	88	55.724	ENSKMAG00000013525	-	96	50.962	Kryptolebias_marmoratus
ENSCJAG00000004554	PSPC1	92	66.004	ENSLBEG00000004474	pspc1	78	70.698	Labrus_bergylta
ENSCJAG00000004554	PSPC1	99	78.095	ENSLACG00000010762	PSPC1	99	77.401	Latimeria_chalumnae
ENSCJAG00000004554	PSPC1	99	77.885	ENSLOCG00000010832	pspc1	99	77.055	Lepisosteus_oculatus
ENSCJAG00000004554	PSPC1	100	97.132	ENSLAFG00000010968	PSPC1	100	97.132	Loxodonta_africana
ENSCJAG00000004554	PSPC1	100	98.470	ENSMFAG00000032728	PSPC1	100	98.470	Macaca_fascicularis
ENSCJAG00000004554	PSPC1	100	98.470	ENSMMUG00000020262	PSPC1	100	98.470	Macaca_mulatta
ENSCJAG00000004554	PSPC1	100	98.470	ENSMNEG00000027401	PSPC1	100	98.470	Macaca_nemestrina
ENSCJAG00000004554	PSPC1	100	99.499	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSCJAG00000004554	PSPC1	88	67.629	ENSMAMG00000004333	pspc1	91	62.366	Mastacembelus_armatus
ENSCJAG00000004554	PSPC1	99	57.491	ENSMZEG00005005726	pspc1	100	54.820	Maylandia_zebra
ENSCJAG00000004554	PSPC1	78	93.596	ENSMGAG00000015134	PSPC1	100	93.596	Meleagris_gallopavo
ENSCJAG00000004554	PSPC1	88	93.792	ENSMAUG00000021067	Pspc1	99	93.792	Mesocricetus_auratus
ENSCJAG00000004554	PSPC1	100	97.505	ENSMICG00000013970	PSPC1	100	97.505	Microcebus_murinus
ENSCJAG00000004554	PSPC1	100	97.514	ENSMOCG00000006060	Pspc1	100	97.514	Microtus_ochrogaster
ENSCJAG00000004554	PSPC1	93	43.665	ENSMMOG00000004352	pspc1	58	55.449	Mola_mola
ENSCJAG00000004554	PSPC1	93	96.495	ENSMODG00000008029	PSPC1	78	96.495	Monodelphis_domestica
ENSCJAG00000004554	PSPC1	92	67.347	ENSMALG00000008914	pspc1	92	65.447	Monopterus_albus
ENSCJAG00000004554	PSPC1	100	97.519	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.519	Mus_caroli
ENSCJAG00000004554	PSPC1	100	97.710	ENSMUSG00000021938	Pspc1	100	97.710	Mus_musculus
ENSCJAG00000004554	PSPC1	100	97.519	MGP_PahariEiJ_G0030359	Pspc1	100	97.519	Mus_pahari
ENSCJAG00000004554	PSPC1	100	97.519	MGP_SPRETEiJ_G0020232	Pspc1	100	97.519	Mus_spretus
ENSCJAG00000004554	PSPC1	100	98.464	ENSMPUG00000013347	PSPC1	100	98.464	Mustela_putorius_furo
ENSCJAG00000004554	PSPC1	100	96.565	ENSMLUG00000017663	PSPC1	100	96.565	Myotis_lucifugus
ENSCJAG00000004554	PSPC1	100	97.706	ENSNGAG00000011271	Pspc1	100	97.706	Nannospalax_galili
ENSCJAG00000004554	PSPC1	74	65.394	ENSNBRG00000014059	pspc1	92	63.542	Neolamprologus_brichardi
ENSCJAG00000004554	PSPC1	100	98.662	ENSNLEG00000001294	PSPC1	100	98.662	Nomascus_leucogenys
ENSCJAG00000004554	PSPC1	84	94.531	ENSMEUG00000000476	PSPC1	84	95.312	Notamacropus_eugenii
ENSCJAG00000004554	PSPC1	100	86.372	ENSODEG00000007817	-	100	83.074	Octodon_degus
ENSCJAG00000004554	PSPC1	100	85.249	ENSODEG00000019012	-	100	85.958	Octodon_degus
ENSCJAG00000004554	PSPC1	99	64.325	ENSONIG00000012010	pspc1	99	62.888	Oreochromis_niloticus
ENSCJAG00000004554	PSPC1	99	66.284	ENSOANG00000011381	-	99	64.054	Ornithorhynchus_anatinus
ENSCJAG00000004554	PSPC1	77	97.744	ENSOANG00000009017	-	100	97.744	Ornithorhynchus_anatinus
ENSCJAG00000004554	PSPC1	100	98.088	ENSOCUG00000006153	PSPC1	100	98.088	Oryctolagus_cuniculus
ENSCJAG00000004554	PSPC1	88	70.213	ENSORLG00000004232	-	87	66.091	Oryzias_latipes
ENSCJAG00000004554	PSPC1	88	69.787	ENSORLG00020000578	PSPC1	86	66.522	Oryzias_latipes_hni
ENSCJAG00000004554	PSPC1	88	70.638	ENSORLG00015017480	pspc1	86	66.739	Oryzias_latipes_hsok
ENSCJAG00000004554	PSPC1	100	98.853	ENSOGAG00000012643	PSPC1	100	98.853	Otolemur_garnettii
ENSCJAG00000004554	PSPC1	100	91.396	ENSOARG00000014163	PSPC1	100	91.396	Ovis_aries
ENSCJAG00000004554	PSPC1	89	98.182	ENSPPAG00000009836	PSPC1	98	98.182	Pan_paniscus
ENSCJAG00000004554	PSPC1	100	98.848	ENSPPRG00000008833	PSPC1	100	98.848	Panthera_pardus
ENSCJAG00000004554	PSPC1	100	83.301	ENSPTIG00000016917	PSPC1	100	83.301	Panthera_tigris_altaica
ENSCJAG00000004554	PSPC1	98	97.276	ENSPTRG00000005677	PSPC1	99	98.971	Pan_troglodytes
ENSCJAG00000004554	PSPC1	100	98.662	ENSPANG00000001992	PSPC1	100	98.662	Papio_anubis
ENSCJAG00000004554	PSPC1	89	75.000	ENSPKIG00000003578	pspc1	88	74.414	Paramormyrops_kingsleyae
ENSCJAG00000004554	PSPC1	99	86.629	ENSPSIG00000005168	PSPC1	99	87.283	Pelodiscus_sinensis
ENSCJAG00000004554	PSPC1	59	70.476	ENSPMGG00000015135	pspc1	86	70.382	Periophthalmus_magnuspinnatus
ENSCJAG00000004554	PSPC1	100	97.897	ENSPEMG00000015214	Pspc1	100	97.897	Peromyscus_maniculatus_bairdii
ENSCJAG00000004554	PSPC1	56	44.912	ENSPMAG00000004618	pspc1	88	44.792	Petromyzon_marinus
ENSCJAG00000004554	PSPC1	99	97.126	ENSPCIG00000017680	PSPC1	100	97.126	Phascolarctos_cinereus
ENSCJAG00000004554	PSPC1	95	66.008	ENSPFOG00000003362	pspc1	88	67.653	Poecilia_formosa
ENSCJAG00000004554	PSPC1	95	66.008	ENSPLAG00000011540	pspc1	87	67.653	Poecilia_latipinna
ENSCJAG00000004554	PSPC1	70	64.595	ENSPLAG00000004407	-	53	60.209	Poecilia_latipinna
ENSCJAG00000004554	PSPC1	69	65.110	ENSPMEG00000001025	-	52	60.638	Poecilia_mexicana
ENSCJAG00000004554	PSPC1	95	65.613	ENSPMEG00000008322	pspc1	87	67.230	Poecilia_mexicana
ENSCJAG00000004554	PSPC1	95	65.613	ENSPREG00000007786	pspc1	87	67.653	Poecilia_reticulata
ENSCJAG00000004554	PSPC1	100	98.088	ENSPPYG00000005186	PSPC1	100	98.088	Pongo_abelii
ENSCJAG00000004554	PSPC1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSCJAG00000004554	PSPC1	100	94.073	ENSPCOG00000014364	PSPC1	100	94.073	Propithecus_coquereli
ENSCJAG00000004554	PSPC1	100	95.010	ENSPVAG00000005036	PSPC1	100	95.393	Pteropus_vampyrus
ENSCJAG00000004554	PSPC1	99	57.678	ENSPNYG00000008893	pspc1	100	55.009	Pundamilia_nyererei
ENSCJAG00000004554	PSPC1	99	68.224	ENSPNAG00000016511	pspc1	100	67.850	Pygocentrus_nattereri
ENSCJAG00000004554	PSPC1	100	97.706	ENSRNOG00000020782	Pspc1	100	97.706	Rattus_norvegicus
ENSCJAG00000004554	PSPC1	93	98.973	ENSRBIG00000036057	PSPC1	100	98.973	Rhinopithecus_bieti
ENSCJAG00000004554	PSPC1	100	98.662	ENSRROG00000036334	PSPC1	100	98.662	Rhinopithecus_roxellana
ENSCJAG00000004554	PSPC1	78	94.588	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSCJAG00000004554	PSPC1	100	91.238	ENSSHAG00000004696	PSPC1	100	91.429	Sarcophilus_harrisii
ENSCJAG00000004554	PSPC1	82	79.391	ENSSFOG00015001395	pspc1	90	78.372	Scleropages_formosus
ENSCJAG00000004554	PSPC1	93	66.000	ENSSMAG00000001761	pspc1	86	74.928	Scophthalmus_maximus
ENSCJAG00000004554	PSPC1	88	69.168	ENSSDUG00000010651	pspc1	80	71.903	Seriola_dumerili
ENSCJAG00000004554	PSPC1	88	64.758	ENSSLDG00000004284	pspc1	86	62.217	Seriola_lalandi_dorsalis
ENSCJAG00000004554	PSPC1	100	90.019	ENSSARG00000000888	PSPC1	100	90.403	Sorex_araneus
ENSCJAG00000004554	PSPC1	89	54.025	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSCJAG00000004554	PSPC1	99	79.029	ENSSPUG00000008550	PSPC1	99	79.724	Sphenodon_punctatus
ENSCJAG00000004554	PSPC1	91	67.600	ENSSPAG00000001921	pspc1	81	70.917	Stegastes_partitus
ENSCJAG00000004554	PSPC1	100	97.126	ENSSSCG00000009569	PSPC1	100	97.126	Sus_scrofa
ENSCJAG00000004554	PSPC1	89	94.647	ENSTGUG00000011295	PSPC1	100	94.647	Taeniopygia_guttata
ENSCJAG00000004554	PSPC1	88	63.270	ENSTRUG00000011335	pspc1	77	65.937	Takifugu_rubripes
ENSCJAG00000004554	PSPC1	88	65.236	ENSTNIG00000010358	pspc1	88	64.920	Tetraodon_nigroviridis
ENSCJAG00000004554	PSPC1	100	77.735	ENSTBEG00000002361	PSPC1	100	76.008	Tupaia_belangeri
ENSCJAG00000004554	PSPC1	100	97.318	ENSTTRG00000003343	PSPC1	100	97.318	Tursiops_truncatus
ENSCJAG00000004554	PSPC1	67	98.854	ENSUAMG00000012309	PSPC1	100	98.854	Ursus_americanus
ENSCJAG00000004554	PSPC1	93	98.357	ENSUMAG00000013993	PSPC1	100	98.357	Ursus_maritimus
ENSCJAG00000004554	PSPC1	77	99.248	ENSVPAG00000010029	PSPC1	100	99.248	Vicugna_pacos
ENSCJAG00000004554	PSPC1	100	98.848	ENSVVUG00000006414	PSPC1	100	99.219	Vulpes_vulpes
ENSCJAG00000004554	PSPC1	66	73.239	ENSXCOG00000017438	pspc1	84	73.239	Xiphophorus_couchianus
ENSCJAG00000004554	PSPC1	66	73.521	ENSXMAG00000007929	pspc1	84	73.521	Xiphophorus_maculatus