EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000004959 (Gene tree)
Gene ID: 100403004
Gene Symbol: MBD1
Alias: CXXC3|PCM1
Full Name: methyl-CpG binding domain protein 1
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 10710 bases
Position: chrNTIC01003335.1:86752989-86763698
Accession: 6916
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000009173	MBD	PF01429.19	3.5e-16	1	1
ENSCJAP00000009153	MBD	PF01429.19	3.6e-16	1	1
ENSCJAP00000009187	MBD	PF01429.19	3.8e-16	1	1
ENSCJAP00000009185	MBD	PF01429.19	4.3e-16	1	1
ENSCJAP00000009182	MBD	PF01429.19	4.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000009695	MBD1-203	1641	-	ENSCJAP00000009173	547 (aa)	-	F7IKH9
ENSCJAT00000009712	MBD1-202	1761	-	ENSCJAP00000009187	586 (aa)	-	F7IKD2
ENSCJAT00000009706	MBD1-201	1968	-	ENSCJAP00000009182	655 (aa)	-	F7IKE0
ENSCJAT00000009673	MBD1-205	1732	-	ENSCJAP00000009153	568 (aa)	-	F7IQ64
ENSCJAT00000009710	MBD1-204	1954	-	ENSCJAP00000009185	642 (aa)	-	F7IKD5

Gene Model

Click here to download ENSCJAG00000004959's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000004959's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000004959	MBD1	100	96.641	ENSG00000141644	MBD1	100	96.641	Homo_sapiens
ENSCJAG00000004959	MBD1	100	85.404	ENSAMEG00000000238	MBD1	96	84.783	Ailuropoda_melanoleuca
ENSCJAG00000004959	MBD1	70	45.545	ENSACAG00000006091	-	100	44.802	Anolis_carolinensis
ENSCJAG00000004959	MBD1	100	98.321	ENSANAG00000036253	MBD1	100	98.321	Aotus_nancymaae
ENSCJAG00000004959	MBD1	100	84.137	ENSBTAG00000003801	MBD1	100	84.292	Bos_taurus
ENSCJAG00000004959	MBD1	100	84.448	ENSCAFG00000018928	MBD1	96	85.226	Canis_familiaris
ENSCJAG00000004959	MBD1	99	83.622	ENSCAFG00020024272	MBD1	97	84.409	Canis_lupus_dingo
ENSCJAG00000004959	MBD1	100	84.137	ENSCHIG00000021134	MBD1	100	84.292	Capra_hircus
ENSCJAG00000004959	MBD1	100	90.076	ENSTSYG00000000509	MBD1	100	90.076	Carlito_syrichta
ENSCJAG00000004959	MBD1	95	67.278	ENSCAPG00000015782	MBD1	96	66.972	Cavia_aperea
ENSCJAG00000004959	MBD1	100	74.624	ENSCPOG00000001671	MBD1	100	73.623	Cavia_porcellus
ENSCJAG00000004959	MBD1	100	95.884	ENSCCAG00000034600	MBD1	100	95.884	Cebus_capucinus
ENSCJAG00000004959	MBD1	100	96.416	ENSCATG00000029959	MBD1	100	96.416	Cercocebus_atys
ENSCJAG00000004959	MBD1	100	83.956	ENSCLAG00000007457	MBD1	89	83.956	Chinchilla_lanigera
ENSCJAG00000004959	MBD1	100	91.589	ENSCSAG00000018070	MBD1	98	97.128	Chlorocebus_sabaeus
ENSCJAG00000004959	MBD1	100	96.246	ENSCANG00000033425	MBD1	100	96.246	Colobus_angolensis_palliatus
ENSCJAG00000004959	MBD1	100	69.302	ENSCGRG00001014843	Mbd1	98	74.497	Cricetulus_griseus_chok1gshd
ENSCJAG00000004959	MBD1	99	54.416	ENSCGRG00000014135	Mbd1	96	58.221	Cricetulus_griseus_crigri
ENSCJAG00000004959	MBD1	100	79.782	ENSDNOG00000015998	MBD1	100	81.804	Dasypus_novemcinctus
ENSCJAG00000004959	MBD1	87	79.268	ENSDORG00000013917	Mbd1	96	78.963	Dipodomys_ordii
ENSCJAG00000004959	MBD1	100	85.693	ENSEASG00005003857	MBD1	100	87.215	Equus_asinus_asinus
ENSCJAG00000004959	MBD1	99	83.805	ENSECAG00000011497	MBD1	79	87.374	Equus_caballus
ENSCJAG00000004959	MBD1	100	86.758	ENSFCAG00000015730	MBD1	100	86.301	Felis_catus
ENSCJAG00000004959	MBD1	91	78.082	ENSFDAG00000011085	MBD1	97	78.078	Fukomys_damarensis
ENSCJAG00000004959	MBD1	51	52.174	ENSGAFG00000008975	mbd1b	50	37.079	Gambusia_affinis
ENSCJAG00000004959	MBD1	70	31.000	ENSGACG00000012106	-	58	32.410	Gasterosteus_aculeatus
ENSCJAG00000004959	MBD1	100	96.183	ENSGGOG00000016966	MBD1	100	96.183	Gorilla_gorilla
ENSCJAG00000004959	MBD1	100	83.801	ENSHGLG00000008740	MBD1	99	85.403	Heterocephalus_glaber_female
ENSCJAG00000004959	MBD1	93	84.356	ENSHGLG00100005198	MBD1	98	89.734	Heterocephalus_glaber_male
ENSCJAG00000004959	MBD1	63	38.650	ENSIPUG00000015243	-	50	37.748	Ictalurus_punctatus
ENSCJAG00000004959	MBD1	100	79.721	ENSSTOG00000007780	MBD1	98	83.721	Ictidomys_tridecemlineatus
ENSCJAG00000004959	MBD1	98	66.297	ENSJJAG00000022859	Mbd1	96	67.559	Jaculus_jaculus
ENSCJAG00000004959	MBD1	74	32.093	ENSKMAG00000020760	mbd1b	50	31.172	Kryptolebias_marmoratus
ENSCJAG00000004959	MBD1	87	37.951	ENSLACG00000002414	-	51	65.079	Latimeria_chalumnae
ENSCJAG00000004959	MBD1	99	70.469	ENSLAFG00000031328	MBD1	97	75.874	Loxodonta_africana
ENSCJAG00000004959	MBD1	100	95.247	ENSMFAG00000026335	MBD1	100	94.860	Macaca_fascicularis
ENSCJAG00000004959	MBD1	100	95.247	ENSMMUG00000009050	MBD1	100	94.860	Macaca_mulatta
ENSCJAG00000004959	MBD1	100	95.247	ENSMNEG00000038822	MBD1	100	94.860	Macaca_nemestrina
ENSCJAG00000004959	MBD1	100	96.416	ENSMLEG00000043121	MBD1	100	96.416	Mandrillus_leucophaeus
ENSCJAG00000004959	MBD1	69	38.418	ENSMAMG00000023341	-	51	59.155	Mastacembelus_armatus
ENSCJAG00000004959	MBD1	99	88.927	ENSMICG00000006414	MBD1	100	88.927	Microcebus_murinus
ENSCJAG00000004959	MBD1	51	73.145	ENSMOCG00000011976	-	93	77.186	Microtus_ochrogaster
ENSCJAG00000004959	MBD1	72	43.659	ENSMODG00000001286	-	58	45.013	Monodelphis_domestica
ENSCJAG00000004959	MBD1	99	63.063	ENSMUSG00000024561	Mbd1	97	67.252	Mus_musculus
ENSCJAG00000004959	MBD1	100	63.885	MGP_PahariEiJ_G0019128	Mbd1	98	67.695	Mus_pahari
ENSCJAG00000004959	MBD1	98	64.526	MGP_SPRETEiJ_G0023304	Mbd1	99	68.618	Mus_spretus
ENSCJAG00000004959	MBD1	100	84.938	ENSMPUG00000008843	MBD1	96	84.472	Mustela_putorius_furo
ENSCJAG00000004959	MBD1	100	83.333	ENSMLUG00000008286	MBD1	96	83.333	Myotis_lucifugus
ENSCJAG00000004959	MBD1	98	63.240	ENSNGAG00000011412	Mbd1	85	78.261	Nannospalax_galili
ENSCJAG00000004959	MBD1	100	81.399	ENSNLEG00000032711	-	100	80.717	Nomascus_leucogenys
ENSCJAG00000004959	MBD1	100	95.267	ENSNLEG00000011661	-	100	95.267	Nomascus_leucogenys
ENSCJAG00000004959	MBD1	100	70.405	ENSOPRG00000007647	MBD1	98	74.155	Ochotona_princeps
ENSCJAG00000004959	MBD1	99	66.719	ENSODEG00000018451	MBD1	97	79.630	Octodon_degus
ENSCJAG00000004959	MBD1	86	44.483	ENSOANG00000014593	-	100	46.542	Ornithorhynchus_anatinus
ENSCJAG00000004959	MBD1	100	82.426	ENSOCUG00000006554	MBD1	100	82.893	Oryctolagus_cuniculus
ENSCJAG00000004959	MBD1	100	85.714	ENSOGAG00000003784	MBD1	96	85.714	Otolemur_garnettii
ENSCJAG00000004959	MBD1	100	83.851	ENSOARG00000004218	MBD1	95	84.006	Ovis_aries
ENSCJAG00000004959	MBD1	100	96.336	ENSPPAG00000038886	MBD1	100	96.336	Pan_paniscus
ENSCJAG00000004959	MBD1	100	86.233	ENSPPRG00000021387	MBD1	100	85.779	Panthera_pardus
ENSCJAG00000004959	MBD1	100	86.758	ENSPTIG00000021231	MBD1	100	86.301	Panthera_tigris_altaica
ENSCJAG00000004959	MBD1	100	96.246	ENSPTRG00000010021	MBD1	100	96.246	Pan_troglodytes
ENSCJAG00000004959	MBD1	100	96.641	ENSPANG00000010867	MBD1	100	96.641	Papio_anubis
ENSCJAG00000004959	MBD1	99	56.366	ENSPEMG00000022630	Mbd1	96	58.795	Peromyscus_maniculatus_bairdii
ENSCJAG00000004959	MBD1	96	45.975	ENSPCIG00000027937	-	79	47.818	Phascolarctos_cinereus
ENSCJAG00000004959	MBD1	55	53.846	ENSPFOG00000007511	mbd1b	50	37.079	Poecilia_formosa
ENSCJAG00000004959	MBD1	51	52.174	ENSPLAG00000021258	mbd1b	50	37.079	Poecilia_latipinna
ENSCJAG00000004959	MBD1	64	53.846	ENSPMEG00000024145	mbd1b	50	37.079	Poecilia_mexicana
ENSCJAG00000004959	MBD1	51	52.174	ENSPREG00000021805	mbd1b	50	37.079	Poecilia_reticulata
ENSCJAG00000004959	MBD1	100	91.589	ENSPPYG00000009158	MBD1	89	97.128	Pongo_abelii
ENSCJAG00000004959	MBD1	99	70.405	ENSPCAG00000001648	MBD1	93	83.942	Procavia_capensis
ENSCJAG00000004959	MBD1	99	90.840	ENSPCOG00000012450	MBD1	100	90.222	Propithecus_coquereli
ENSCJAG00000004959	MBD1	99	52.098	ENSRNOG00000024104	Mbd1	92	57.391	Rattus_norvegicus
ENSCJAG00000004959	MBD1	100	94.366	ENSRBIG00000041294	MBD1	100	94.366	Rhinopithecus_bieti
ENSCJAG00000004959	MBD1	100	94.860	ENSRROG00000032517	MBD1	100	94.860	Rhinopithecus_roxellana
ENSCJAG00000004959	MBD1	100	97.819	ENSSBOG00000027169	MBD1	100	97.252	Saimiri_boliviensis_boliviensis
ENSCJAG00000004959	MBD1	84	46.253	ENSSHAG00000003661	-	100	47.122	Sarcophilus_harrisii
ENSCJAG00000004959	MBD1	64	31.961	ENSSPAG00000021447	mbd1b	51	38.235	Stegastes_partitus
ENSCJAG00000004959	MBD1	99	81.546	ENSSSCG00000004516	MBD1	98	87.954	Sus_scrofa
ENSCJAG00000004959	MBD1	51	50.538	ENSTRUG00000013422	mbd1b	50	30.288	Takifugu_rubripes
ENSCJAG00000004959	MBD1	74	82.917	ENSTBEG00000012651	-	68	82.917	Tupaia_belangeri
ENSCJAG00000004959	MBD1	100	79.037	ENSTTRG00000015523	MBD1	98	83.838	Tursiops_truncatus
ENSCJAG00000004959	MBD1	99	80.787	ENSUAMG00000004752	MBD1	98	83.305	Ursus_americanus
ENSCJAG00000004959	MBD1	99	84.399	ENSUMAG00000002947	MBD1	98	86.364	Ursus_maritimus