EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000005611 (Gene tree)
Gene ID: 100388181
Gene Symbol: XRN2
Alias: -
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 94546 bases
Position: chrNTIC01034389.1:26072389-26166934
Accession: 100388181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000051846	XRN_N	PF03159.18	1.8e-102	1	1
ENSCJAP00000010232	XRN_N	PF03159.18	1.9e-102	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000060027	XRN2-202	4129	-	ENSCJAP00000051846	920 (aa)	-	F6WIU9
ENSCJAT00000010816	XRN2-201	4219	-	ENSCJAP00000010232	950 (aa)	XP_002747533	F6UP03

Gene Model

Click here to download ENSCJAG00000005611's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03008	Ribosome biogenesis in eukaryotes	KEGG
cjc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000005611's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000005611	XRN2	100	98.737	ENSG00000088930	XRN2	100	98.737	Homo_sapiens
ENSCJAG00000005611	XRN2	97	71.596	ENSAPOG00000009818	xrn2	100	70.438	Acanthochromis_polyacanthus
ENSCJAG00000005611	XRN2	100	97.684	ENSAMEG00000012581	XRN2	100	97.684	Ailuropoda_melanoleuca
ENSCJAG00000005611	XRN2	90	70.421	ENSACIG00000015047	xrn2	95	74.664	Amphilophus_citrinellus
ENSCJAG00000005611	XRN2	97	72.115	ENSAOCG00000023632	xrn2	100	70.964	Amphiprion_ocellaris
ENSCJAG00000005611	XRN2	97	71.945	ENSAPEG00000014871	xrn2	100	70.774	Amphiprion_percula
ENSCJAG00000005611	XRN2	95	71.614	ENSATEG00000001273	xrn2	97	70.930	Anabas_testudineus
ENSCJAG00000005611	XRN2	97	82.992	ENSAPLG00000013869	XRN2	99	83.423	Anas_platyrhynchos
ENSCJAG00000005611	XRN2	100	80.538	ENSACAG00000005565	XRN2	100	80.538	Anolis_carolinensis
ENSCJAG00000005611	XRN2	100	99.263	ENSANAG00000020126	XRN2	100	99.263	Aotus_nancymaae
ENSCJAG00000005611	XRN2	90	73.526	ENSACLG00000010522	xrn2	96	75.833	Astatotilapia_calliptera
ENSCJAG00000005611	XRN2	100	71.254	ENSAMXG00000018301	xrn2	100	71.254	Astyanax_mexicanus
ENSCJAG00000005611	XRN2	100	95.478	ENSBTAG00000011304	XRN2	100	95.478	Bos_taurus
ENSCJAG00000005611	XRN2	87	55.930	WBGene00006964	xrn-2	89	55.317	Caenorhabditis_elegans
ENSCJAG00000005611	XRN2	100	97.579	ENSCAFG00000005185	XRN2	100	97.579	Canis_familiaris
ENSCJAG00000005611	XRN2	100	97.579	ENSCAFG00020027479	XRN2	100	97.579	Canis_lupus_dingo
ENSCJAG00000005611	XRN2	100	96.004	ENSCHIG00000006921	XRN2	100	96.004	Capra_hircus
ENSCJAG00000005611	XRN2	100	96.947	ENSTSYG00000008315	XRN2	100	96.947	Carlito_syrichta
ENSCJAG00000005611	XRN2	97	81.877	ENSCAPG00000010773	XRN2	99	81.769	Cavia_aperea
ENSCJAG00000005611	XRN2	100	97.053	ENSCPOG00000009407	XRN2	100	97.053	Cavia_porcellus
ENSCJAG00000005611	XRN2	100	98.947	ENSCATG00000040350	XRN2	100	98.947	Cercocebus_atys
ENSCJAG00000005611	XRN2	100	97.579	ENSCLAG00000013419	XRN2	100	97.579	Chinchilla_lanigera
ENSCJAG00000005611	XRN2	100	98.947	ENSCSAG00000011094	XRN2	100	98.947	Chlorocebus_sabaeus
ENSCJAG00000005611	XRN2	68	98.925	ENSCHOG00000013404	XRN2	70	98.925	Choloepus_hoffmanni
ENSCJAG00000005611	XRN2	100	84.479	ENSCPBG00000023533	XRN2	100	85.104	Chrysemys_picta_bellii
ENSCJAG00000005611	XRN2	86	60.215	ENSCING00000022336	-	100	60.573	Ciona_intestinalis
ENSCJAG00000005611	XRN2	87	58.950	ENSCSAVG00000011217	-	100	61.407	Ciona_savignyi
ENSCJAG00000005611	XRN2	100	98.947	ENSCANG00000040240	XRN2	100	98.947	Colobus_angolensis_palliatus
ENSCJAG00000005611	XRN2	98	96.340	ENSCGRG00001010676	Xrn2	99	96.340	Cricetulus_griseus_chok1gshd
ENSCJAG00000005611	XRN2	97	95.469	ENSCGRG00000006378	Xrn2	99	95.469	Cricetulus_griseus_crigri
ENSCJAG00000005611	XRN2	55	72.157	ENSCSEG00000005628	xrn2	100	72.157	Cynoglossus_semilaevis
ENSCJAG00000005611	XRN2	89	71.379	ENSCVAG00000018999	xrn2	98	76.762	Cyprinodon_variegatus
ENSCJAG00000005611	XRN2	100	69.713	ENSDARG00000101900	xrn2	96	77.820	Danio_rerio
ENSCJAG00000005611	XRN2	100	96.842	ENSDNOG00000001895	XRN2	100	96.842	Dasypus_novemcinctus
ENSCJAG00000005611	XRN2	100	95.579	ENSDORG00000005434	Xrn2	100	95.579	Dipodomys_ordii
ENSCJAG00000005611	XRN2	86	56.432	FBgn0031868	Rat1	90	55.047	Drosophila_melanogaster
ENSCJAG00000005611	XRN2	100	83.895	ENSETEG00000001740	XRN2	100	83.895	Echinops_telfairi
ENSCJAG00000005611	XRN2	84	71.636	ENSEBUG00000016136	xrn2	100	71.636	Eptatretus_burgeri
ENSCJAG00000005611	XRN2	100	97.368	ENSEASG00005002484	XRN2	100	97.368	Equus_asinus_asinus
ENSCJAG00000005611	XRN2	99	97.571	ENSECAG00000018988	XRN2	96	100.000	Equus_caballus
ENSCJAG00000005611	XRN2	80	100.000	ENSEEUG00000009265	XRN2	80	100.000	Erinaceus_europaeus
ENSCJAG00000005611	XRN2	100	70.287	ENSELUG00000000552	xrn2	100	70.697	Esox_lucius
ENSCJAG00000005611	XRN2	100	97.684	ENSFCAG00000007970	XRN2	100	97.684	Felis_catus
ENSCJAG00000005611	XRN2	100	82.495	ENSFALG00000004508	XRN2	100	82.914	Ficedula_albicollis
ENSCJAG00000005611	XRN2	100	97.579	ENSFDAG00000016311	XRN2	100	97.579	Fukomys_damarensis
ENSCJAG00000005611	XRN2	55	69.847	ENSFHEG00000013039	xrn2	98	69.847	Fundulus_heteroclitus
ENSCJAG00000005611	XRN2	86	72.661	ENSGMOG00000013436	xrn2	100	72.661	Gadus_morhua
ENSCJAG00000005611	XRN2	100	82.513	ENSGALG00000008372	XRN2	100	82.513	Gallus_gallus
ENSCJAG00000005611	XRN2	89	73.372	ENSGAFG00000014284	xrn2	98	73.372	Gambusia_affinis
ENSCJAG00000005611	XRN2	87	74.519	ENSGACG00000011870	xrn2	100	74.519	Gasterosteus_aculeatus
ENSCJAG00000005611	XRN2	100	84.271	ENSGAGG00000004884	XRN2	100	84.896	Gopherus_agassizii
ENSCJAG00000005611	XRN2	100	98.842	ENSGGOG00000013738	XRN2	100	98.842	Gorilla_gorilla
ENSCJAG00000005611	XRN2	56	74.664	ENSHBUG00000005077	xrn2	96	75.833	Haplochromis_burtoni
ENSCJAG00000005611	XRN2	100	96.000	ENSHGLG00000014831	XRN2	100	96.000	Heterocephalus_glaber_female
ENSCJAG00000005611	XRN2	100	96.000	ENSHGLG00100013130	XRN2	100	96.000	Heterocephalus_glaber_male
ENSCJAG00000005611	XRN2	99	67.915	ENSHCOG00000011994	xrn2	99	68.826	Hippocampus_comes
ENSCJAG00000005611	XRN2	100	69.827	ENSIPUG00000006639	xrn2	100	69.827	Ictalurus_punctatus
ENSCJAG00000005611	XRN2	100	98.000	ENSSTOG00000000589	XRN2	100	98.000	Ictidomys_tridecemlineatus
ENSCJAG00000005611	XRN2	100	97.158	ENSJJAG00000022128	Xrn2	100	97.158	Jaculus_jaculus
ENSCJAG00000005611	XRN2	55	79.492	ENSLBEG00000010041	xrn2	100	79.492	Labrus_bergylta
ENSCJAG00000005611	XRN2	94	77.197	ENSLACG00000008307	XRN2	99	79.509	Latimeria_chalumnae
ENSCJAG00000005611	XRN2	99	72.699	ENSLOCG00000016874	xrn2	100	72.699	Lepisosteus_oculatus
ENSCJAG00000005611	XRN2	100	96.316	ENSLAFG00000014624	XRN2	100	96.316	Loxodonta_africana
ENSCJAG00000005611	XRN2	100	98.947	ENSMFAG00000038122	XRN2	100	98.947	Macaca_fascicularis
ENSCJAG00000005611	XRN2	100	98.947	ENSMMUG00000011405	XRN2	100	98.947	Macaca_mulatta
ENSCJAG00000005611	XRN2	100	98.842	ENSMNEG00000040626	XRN2	100	98.842	Macaca_nemestrina
ENSCJAG00000005611	XRN2	100	98.842	ENSMLEG00000041897	XRN2	100	98.842	Mandrillus_leucophaeus
ENSCJAG00000005611	XRN2	95	72.579	ENSMAMG00000008633	xrn2	98	71.069	Mastacembelus_armatus
ENSCJAG00000005611	XRN2	90	75.376	ENSMZEG00005022362	xrn2	97	75.376	Maylandia_zebra
ENSCJAG00000005611	XRN2	99	81.042	ENSMGAG00000003196	XRN2	99	81.042	Meleagris_gallopavo
ENSCJAG00000005611	XRN2	100	96.421	ENSMAUG00000021842	Xrn2	100	96.421	Mesocricetus_auratus
ENSCJAG00000005611	XRN2	100	96.842	ENSMICG00000008126	XRN2	100	96.842	Microcebus_murinus
ENSCJAG00000005611	XRN2	100	95.895	ENSMOCG00000012588	Xrn2	100	95.895	Microtus_ochrogaster
ENSCJAG00000005611	XRN2	89	73.883	ENSMMOG00000017576	xrn2	96	74.432	Mola_mola
ENSCJAG00000005611	XRN2	100	91.053	ENSMODG00000006163	XRN2	100	91.053	Monodelphis_domestica
ENSCJAG00000005611	XRN2	91	72.135	ENSMALG00000011355	xrn2	100	74.186	Monopterus_albus
ENSCJAG00000005611	XRN2	100	95.268	MGP_CAROLIEiJ_G0024400	Xrn2	100	95.268	Mus_caroli
ENSCJAG00000005611	XRN2	100	95.478	ENSMUSG00000027433	Xrn2	100	95.478	Mus_musculus
ENSCJAG00000005611	XRN2	100	95.268	MGP_PahariEiJ_G0025843	Xrn2	100	95.268	Mus_pahari
ENSCJAG00000005611	XRN2	100	95.478	MGP_SPRETEiJ_G0025318	Xrn2	100	95.478	Mus_spretus
ENSCJAG00000005611	XRN2	100	96.174	ENSMPUG00000001198	XRN2	93	96.174	Mustela_putorius_furo
ENSCJAG00000005611	XRN2	100	97.579	ENSMLUG00000001536	XRN2	100	97.579	Myotis_lucifugus
ENSCJAG00000005611	XRN2	100	97.368	ENSNGAG00000018138	Xrn2	100	97.368	Nannospalax_galili
ENSCJAG00000005611	XRN2	90	75.694	ENSNBRG00000008062	xrn2	97	75.694	Neolamprologus_brichardi
ENSCJAG00000005611	XRN2	100	98.842	ENSNLEG00000009991	XRN2	100	98.842	Nomascus_leucogenys
ENSCJAG00000005611	XRN2	68	97.778	ENSMEUG00000008622	-	67	97.778	Notamacropus_eugenii
ENSCJAG00000005611	XRN2	75	78.534	ENSOPRG00000001397	-	77	78.534	Ochotona_princeps
ENSCJAG00000005611	XRN2	100	97.263	ENSODEG00000010745	-	100	97.263	Octodon_degus
ENSCJAG00000005611	XRN2	98	88.242	ENSODEG00000000860	-	99	88.673	Octodon_degus
ENSCJAG00000005611	XRN2	100	71.546	ENSONIG00000018720	xrn2	100	71.753	Oreochromis_niloticus
ENSCJAG00000005611	XRN2	100	90.966	ENSOANG00000015673	XRN2	100	90.966	Ornithorhynchus_anatinus
ENSCJAG00000005611	XRN2	100	97.789	ENSOCUG00000013468	XRN2	100	97.789	Oryctolagus_cuniculus
ENSCJAG00000005611	XRN2	98	70.509	ENSORLG00000017213	xrn2	97	75.058	Oryzias_latipes
ENSCJAG00000005611	XRN2	98	70.509	ENSORLG00020001824	xrn2	100	70.204	Oryzias_latipes_hni
ENSCJAG00000005611	XRN2	98	70.301	ENSORLG00015019747	xrn2	100	70.000	Oryzias_latipes_hsok
ENSCJAG00000005611	XRN2	90	74.104	ENSOMEG00000019820	xrn2	100	69.442	Oryzias_melastigma
ENSCJAG00000005611	XRN2	100	96.740	ENSOGAG00000001068	XRN2	100	96.740	Otolemur_garnettii
ENSCJAG00000005611	XRN2	97	95.896	ENSOARG00000004443	XRN2	100	95.896	Ovis_aries
ENSCJAG00000005611	XRN2	100	98.842	ENSPPAG00000033549	XRN2	100	98.842	Pan_paniscus
ENSCJAG00000005611	XRN2	100	97.684	ENSPPRG00000008732	XRN2	100	97.684	Panthera_pardus
ENSCJAG00000005611	XRN2	97	97.622	ENSPTIG00000015683	XRN2	97	97.622	Panthera_tigris_altaica
ENSCJAG00000005611	XRN2	100	98.842	ENSPTRG00000013308	XRN2	100	98.842	Pan_troglodytes
ENSCJAG00000005611	XRN2	100	98.947	ENSPANG00000018088	XRN2	100	98.947	Papio_anubis
ENSCJAG00000005611	XRN2	100	70.829	ENSPKIG00000016889	xrn2	100	70.829	Paramormyrops_kingsleyae
ENSCJAG00000005611	XRN2	80	86.962	ENSPSIG00000014666	XRN2	99	86.962	Pelodiscus_sinensis
ENSCJAG00000005611	XRN2	100	95.789	ENSPEMG00000000111	Xrn2	100	95.789	Peromyscus_maniculatus_bairdii
ENSCJAG00000005611	XRN2	100	69.782	ENSPFOG00000004182	xrn2	99	70.186	Poecilia_formosa
ENSCJAG00000005611	XRN2	89	74.070	ENSPLAG00000007351	xrn2	96	74.070	Poecilia_latipinna
ENSCJAG00000005611	XRN2	94	68.118	ENSPMEG00000011798	xrn2	99	68.988	Poecilia_mexicana
ENSCJAG00000005611	XRN2	89	73.953	ENSPREG00000012452	xrn2	99	72.391	Poecilia_reticulata
ENSCJAG00000005611	XRN2	100	98.421	ENSPPYG00000010755	XRN2	100	98.421	Pongo_abelii
ENSCJAG00000005611	XRN2	100	91.071	ENSPCAG00000011191	XRN2	100	91.071	Procavia_capensis
ENSCJAG00000005611	XRN2	100	90.421	ENSPCOG00000016468	XRN2	100	90.421	Propithecus_coquereli
ENSCJAG00000005611	XRN2	96	94.833	ENSPVAG00000004596	XRN2	93	94.833	Pteropus_vampyrus
ENSCJAG00000005611	XRN2	90	73.526	ENSPNYG00000001765	xrn2	97	73.526	Pundamilia_nyererei
ENSCJAG00000005611	XRN2	100	71.327	ENSPNAG00000010956	xrn2	99	71.327	Pygocentrus_nattereri
ENSCJAG00000005611	XRN2	100	96.109	ENSRNOG00000011785	Xrn2	100	96.109	Rattus_norvegicus
ENSCJAG00000005611	XRN2	86	99.022	ENSRBIG00000036193	XRN2	100	99.022	Rhinopithecus_bieti
ENSCJAG00000005611	XRN2	100	98.947	ENSRROG00000044400	XRN2	90	98.947	Rhinopithecus_roxellana
ENSCJAG00000005611	XRN2	77	48.069	YOR048C	RAT1	63	53.606	Saccharomyces_cerevisiae
ENSCJAG00000005611	XRN2	100	99.368	ENSSBOG00000021014	XRN2	100	99.368	Saimiri_boliviensis_boliviensis
ENSCJAG00000005611	XRN2	100	71.827	ENSSFOG00015001091	xrn2	100	71.827	Scleropages_formosus
ENSCJAG00000005611	XRN2	92	72.686	ENSSMAG00000007834	xrn2	100	68.490	Scophthalmus_maximus
ENSCJAG00000005611	XRN2	91	72.172	ENSSDUG00000012802	xrn2	99	72.511	Seriola_dumerili
ENSCJAG00000005611	XRN2	93	73.446	ENSSLDG00000021273	xrn2	100	73.446	Seriola_lalandi_dorsalis
ENSCJAG00000005611	XRN2	76	100.000	ENSSARG00000005859	-	76	100.000	Sorex_araneus
ENSCJAG00000005611	XRN2	98	79.380	ENSSPUG00000005485	XRN2	96	79.487	Sphenodon_punctatus
ENSCJAG00000005611	XRN2	100	70.522	ENSSPAG00000016027	xrn2	99	70.522	Stegastes_partitus
ENSCJAG00000005611	XRN2	100	95.368	ENSSSCG00000007109	XRN2	100	95.368	Sus_scrofa
ENSCJAG00000005611	XRN2	100	81.420	ENSTGUG00000007535	XRN2	100	81.837	Taeniopygia_guttata
ENSCJAG00000005611	XRN2	100	68.214	ENSTRUG00000015489	xrn2	100	68.586	Takifugu_rubripes
ENSCJAG00000005611	XRN2	100	71.132	ENSTNIG00000010712	xrn2	100	71.132	Tetraodon_nigroviridis
ENSCJAG00000005611	XRN2	100	96.842	ENSTBEG00000004119	XRN2	100	96.842	Tupaia_belangeri
ENSCJAG00000005611	XRN2	96	97.658	ENSTTRG00000009087	XRN2	93	97.658	Tursiops_truncatus
ENSCJAG00000005611	XRN2	100	97.789	ENSUAMG00000024634	XRN2	100	97.789	Ursus_americanus
ENSCJAG00000005611	XRN2	97	97.514	ENSUMAG00000004012	XRN2	95	97.514	Ursus_maritimus
ENSCJAG00000005611	XRN2	89	89.586	ENSVPAG00000010694	XRN2	91	89.586	Vicugna_pacos
ENSCJAG00000005611	XRN2	100	97.895	ENSVVUG00000012178	XRN2	100	97.895	Vulpes_vulpes
ENSCJAG00000005611	XRN2	100	74.583	ENSXETG00000023501	xrn2	100	75.208	Xenopus_tropicalis
ENSCJAG00000005611	XRN2	100	68.243	ENSXMAG00000000242	xrn2	92	78.832	Xiphophorus_maculatus