EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000005684 (Gene tree)
Gene ID: 100403998
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 33287 bases
Position: chrNTIC01013335.1:36551262-36584548
Accession: 100403998
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000063739	EST1	PF10374.9	6.2e-24	1	1
ENSCJAP00000010554	EST1	PF10374.9	7.1e-24	1	1
ENSCJAP00000063739	EST1_DNA_bind	PF10373.9	3.7e-40	1	2
ENSCJAP00000063739	EST1_DNA_bind	PF10373.9	3.7e-40	2	2
ENSCJAP00000010554	EST1_DNA_bind	PF10373.9	4.2e-40	1	2
ENSCJAP00000010554	EST1_DNA_bind	PF10373.9	4.2e-40	2	2
ENSCJAP00000010554	PIN_4	PF13638.6	1.6e-05	1	1
ENSCJAP00000063739	PIN_4	PF13638.6	2.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000011152	SMG5-202	3397	-	ENSCJAP00000010554	1016 (aa)	XP_008982846	F7ID90
ENSCJAT00000069945	SMG5-201	3289	-	ENSCJAP00000063739	980 (aa)	-	A0A2R8NAZ4

Gene Model

Click here to download ENSCJAG00000005684's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000005684's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000005684	SMG5	100	98.130	ENSG00000198952	SMG5	100	98.130	Homo_sapiens
ENSCJAG00000005684	SMG5	99	67.317	ENSAPOG00000019690	smg5	93	77.103	Acanthochromis_polyacanthus
ENSCJAG00000005684	SMG5	98	92.749	ENSAMEG00000014458	SMG5	100	92.749	Ailuropoda_melanoleuca
ENSCJAG00000005684	SMG5	99	65.125	ENSACIG00000001353	smg5	99	65.544	Amphilophus_citrinellus
ENSCJAG00000005684	SMG5	98	64.700	ENSAOCG00000019483	smg5	93	78.066	Amphiprion_ocellaris
ENSCJAG00000005684	SMG5	98	65.941	ENSAPEG00000022949	smg5	93	77.830	Amphiprion_percula
ENSCJAG00000005684	SMG5	99	65.896	ENSATEG00000005348	smg5	99	67.216	Anabas_testudineus
ENSCJAG00000005684	SMG5	98	79.122	ENSAPLG00000010263	SMG5	100	78.829	Anas_platyrhynchos
ENSCJAG00000005684	SMG5	100	99.409	ENSANAG00000032899	SMG5	100	99.409	Aotus_nancymaae
ENSCJAG00000005684	SMG5	99	64.587	ENSACLG00000009311	smg5	99	66.442	Astatotilapia_calliptera
ENSCJAG00000005684	SMG5	99	44.487	ENSBTAG00000021747	-	99	43.520	Bos_taurus
ENSCJAG00000005684	SMG5	100	95.768	ENSBTAG00000009435	SMG5	100	95.768	Bos_taurus
ENSCJAG00000005684	SMG5	100	94.390	ENSCAFG00000016839	SMG5	100	93.701	Canis_familiaris
ENSCJAG00000005684	SMG5	100	94.390	ENSCAFG00020006061	SMG5	100	93.701	Canis_lupus_dingo
ENSCJAG00000005684	SMG5	99	44.608	ENSCHIG00000006323	-	99	43.652	Capra_hircus
ENSCJAG00000005684	SMG5	100	95.669	ENSCHIG00000007709	SMG5	100	95.669	Capra_hircus
ENSCJAG00000005684	SMG5	100	96.559	ENSTSYG00000004099	SMG5	100	96.559	Carlito_syrichta
ENSCJAG00000005684	SMG5	97	74.341	ENSCAPG00000003631	SMG5	100	74.974	Cavia_aperea
ENSCJAG00000005684	SMG5	100	95.580	ENSCPOG00000015696	SMG5	100	95.285	Cavia_porcellus
ENSCJAG00000005684	SMG5	100	99.213	ENSCCAG00000027409	SMG5	100	99.213	Cebus_capucinus
ENSCJAG00000005684	SMG5	100	98.327	ENSCATG00000030539	SMG5	100	98.327	Cercocebus_atys
ENSCJAG00000005684	SMG5	100	95.776	ENSCLAG00000003983	SMG5	100	95.678	Chinchilla_lanigera
ENSCJAG00000005684	SMG5	100	98.228	ENSCSAG00000002120	SMG5	100	98.228	Chlorocebus_sabaeus
ENSCJAG00000005684	SMG5	56	93.066	ENSCHOG00000008741	-	57	93.066	Choloepus_hoffmanni
ENSCJAG00000005684	SMG5	94	79.108	ENSCPBG00000025848	SMG5	100	78.702	Chrysemys_picta_bellii
ENSCJAG00000005684	SMG5	95	34.901	ENSCING00000008706	-	99	34.778	Ciona_intestinalis
ENSCJAG00000005684	SMG5	100	93.996	ENSCANG00000029208	SMG5	100	93.996	Colobus_angolensis_palliatus
ENSCJAG00000005684	SMG5	100	92.436	ENSCGRG00001006336	Smg5	100	92.141	Cricetulus_griseus_chok1gshd
ENSCJAG00000005684	SMG5	98	92.455	ENSCGRG00000005111	Smg5	100	92.145	Cricetulus_griseus_crigri
ENSCJAG00000005684	SMG5	99	65.467	ENSCSEG00000014220	smg5	92	77.778	Cynoglossus_semilaevis
ENSCJAG00000005684	SMG5	99	60.721	ENSCVAG00000000529	smg5	99	61.419	Cyprinodon_variegatus
ENSCJAG00000005684	SMG5	92	36.853	ENSDNOG00000039862	-	100	35.474	Dasypus_novemcinctus
ENSCJAG00000005684	SMG5	100	91.831	ENSDNOG00000000051	SMG5	100	91.831	Dasypus_novemcinctus
ENSCJAG00000005684	SMG5	100	94.106	ENSDORG00000010382	Smg5	100	93.418	Dipodomys_ordii
ENSCJAG00000005684	SMG5	63	41.837	FBgn0019890	Smg5	58	41.837	Drosophila_melanogaster
ENSCJAG00000005684	SMG5	85	95.146	ENSETEG00000010336	SMG5	89	95.146	Echinops_telfairi
ENSCJAG00000005684	SMG5	94	46.921	ENSEBUG00000003739	smg5	98	46.934	Eptatretus_burgeri
ENSCJAG00000005684	SMG5	100	96.555	ENSEASG00005019122	SMG5	100	96.555	Equus_asinus_asinus
ENSCJAG00000005684	SMG5	100	96.555	ENSECAG00000001389	SMG5	100	96.555	Equus_caballus
ENSCJAG00000005684	SMG5	72	98.271	ENSEEUG00000012690	SMG5	73	98.271	Erinaceus_europaeus
ENSCJAG00000005684	SMG5	99	65.063	ENSELUG00000012585	smg5	99	64.790	Esox_lucius
ENSCJAG00000005684	SMG5	100	93.996	ENSFCAG00000011783	SMG5	100	93.215	Felis_catus
ENSCJAG00000005684	SMG5	60	81.970	ENSFALG00000001166	-	99	82.077	Ficedula_albicollis
ENSCJAG00000005684	SMG5	98	92.749	ENSFDAG00000017388	SMG5	100	92.649	Fukomys_damarensis
ENSCJAG00000005684	SMG5	97	62.336	ENSFHEG00000013939	smg5	95	68.371	Fundulus_heteroclitus
ENSCJAG00000005684	SMG5	99	61.879	ENSGMOG00000007310	smg5	92	76.376	Gadus_morhua
ENSCJAG00000005684	SMG5	99	78.110	ENSGALG00000029918	-	100	77.810	Gallus_gallus
ENSCJAG00000005684	SMG5	100	79.962	ENSGAGG00000016131	SMG5	100	79.772	Gopherus_agassizii
ENSCJAG00000005684	SMG5	100	98.425	ENSGGOG00000010932	SMG5	100	98.425	Gorilla_gorilla
ENSCJAG00000005684	SMG5	99	64.491	ENSHBUG00000008654	smg5	99	65.271	Haplochromis_burtoni
ENSCJAG00000005684	SMG5	100	92.534	ENSHGLG00000019152	SMG5	100	92.731	Heterocephalus_glaber_female
ENSCJAG00000005684	SMG5	93	92.771	ENSHGLG00100015948	SMG5	99	92.990	Heterocephalus_glaber_male
ENSCJAG00000005684	SMG5	86	73.350	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSCJAG00000005684	SMG5	50	58.889	ENSIPUG00000006624	Smg5	99	61.805	Ictalurus_punctatus
ENSCJAG00000005684	SMG5	100	96.559	ENSSTOG00000001780	SMG5	100	96.559	Ictidomys_tridecemlineatus
ENSCJAG00000005684	SMG5	100	92.836	ENSJJAG00000022763	Smg5	100	92.640	Jaculus_jaculus
ENSCJAG00000005684	SMG5	50	59.524	ENSKMAG00000014586	smg5	99	61.368	Kryptolebias_marmoratus
ENSCJAG00000005684	SMG5	99	66.313	ENSLBEG00000002145	smg5	99	66.570	Labrus_bergylta
ENSCJAG00000005684	SMG5	100	65.014	ENSLACG00000010521	SMG5	100	64.824	Latimeria_chalumnae
ENSCJAG00000005684	SMG5	96	78.638	ENSLOCG00000008380	smg5	92	78.673	Lepisosteus_oculatus
ENSCJAG00000005684	SMG5	100	94.587	ENSLAFG00000006241	SMG5	100	94.587	Loxodonta_africana
ENSCJAG00000005684	SMG5	100	98.228	ENSMFAG00000045357	SMG5	100	98.228	Macaca_fascicularis
ENSCJAG00000005684	SMG5	100	98.130	ENSMMUG00000000090	SMG5	100	98.130	Macaca_mulatta
ENSCJAG00000005684	SMG5	100	98.130	ENSMNEG00000044425	SMG5	100	98.130	Macaca_nemestrina
ENSCJAG00000005684	SMG5	100	91.961	ENSMLEG00000041192	SMG5	100	91.961	Mandrillus_leucophaeus
ENSCJAG00000005684	SMG5	99	61.106	ENSMAMG00000010683	smg5	58	56.423	Mastacembelus_armatus
ENSCJAG00000005684	SMG5	99	63.454	ENSMZEG00005015815	smg5	99	64.504	Maylandia_zebra
ENSCJAG00000005684	SMG5	63	58.709	ENSMZEG00005016543	smg5	100	59.639	Maylandia_zebra
ENSCJAG00000005684	SMG5	57	45.043	ENSMAUG00000000043	-	96	44.291	Mesocricetus_auratus
ENSCJAG00000005684	SMG5	100	91.454	ENSMAUG00000010381	Smg5	100	91.257	Mesocricetus_auratus
ENSCJAG00000005684	SMG5	100	97.343	ENSMICG00000002257	SMG5	100	97.343	Microcebus_murinus
ENSCJAG00000005684	SMG5	100	91.373	ENSMOCG00000016590	Smg5	100	90.784	Microtus_ochrogaster
ENSCJAG00000005684	SMG5	99	59.305	ENSMMOG00000017199	smg5	99	59.838	Mola_mola
ENSCJAG00000005684	SMG5	91	90.090	ENSMODG00000016901	SMG5	98	90.541	Monodelphis_domestica
ENSCJAG00000005684	SMG5	80	38.642	ENSMODG00000004735	-	86	40.000	Monodelphis_domestica
ENSCJAG00000005684	SMG5	97	34.946	ENSMODG00000004511	-	99	34.218	Monodelphis_domestica
ENSCJAG00000005684	SMG5	93	36.829	ENSMODG00000004532	-	83	37.940	Monodelphis_domestica
ENSCJAG00000005684	SMG5	78	38.035	ENSMODG00000010675	-	84	38.196	Monodelphis_domestica
ENSCJAG00000005684	SMG5	99	59.644	ENSMALG00000010375	smg5	99	58.563	Monopterus_albus
ENSCJAG00000005684	SMG5	100	92.240	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSCJAG00000005684	SMG5	100	92.338	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSCJAG00000005684	SMG5	100	91.953	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSCJAG00000005684	SMG5	100	92.141	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSCJAG00000005684	SMG5	94	92.842	ENSMPUG00000004546	SMG5	100	92.105	Mustela_putorius_furo
ENSCJAG00000005684	SMG5	100	94.814	ENSMLUG00000008518	SMG5	100	93.933	Myotis_lucifugus
ENSCJAG00000005684	SMG5	100	93.412	ENSNGAG00000020706	Smg5	100	93.117	Nannospalax_galili
ENSCJAG00000005684	SMG5	98	44.389	ENSNGAG00000012101	-	98	44.687	Nannospalax_galili
ENSCJAG00000005684	SMG5	97	63.343	ENSNBRG00000004332	smg5	98	64.028	Neolamprologus_brichardi
ENSCJAG00000005684	SMG5	100	97.933	ENSNLEG00000012439	SMG5	100	97.933	Nomascus_leucogenys
ENSCJAG00000005684	SMG5	100	88.004	ENSMEUG00000012834	SMG5	100	87.119	Notamacropus_eugenii
ENSCJAG00000005684	SMG5	100	94.094	ENSOPRG00000009152	SMG5	100	94.094	Ochotona_princeps
ENSCJAG00000005684	SMG5	100	95.177	ENSODEG00000012237	SMG5	100	95.177	Octodon_degus
ENSCJAG00000005684	SMG5	99	60.496	ENSONIG00000008632	smg5	92	78.066	Oreochromis_niloticus
ENSCJAG00000005684	SMG5	93	40.505	ENSOCUG00000023338	-	99	39.935	Oryctolagus_cuniculus
ENSCJAG00000005684	SMG5	98	95.363	ENSOCUG00000012886	SMG5	100	95.363	Oryctolagus_cuniculus
ENSCJAG00000005684	SMG5	96	60.519	ENSORLG00000016239	smg5	99	61.973	Oryzias_latipes
ENSCJAG00000005684	SMG5	99	65.396	ENSORLG00020013127	smg5	99	65.920	Oryzias_latipes_hni
ENSCJAG00000005684	SMG5	99	65.107	ENSORLG00015019014	smg5	99	65.695	Oryzias_latipes_hsok
ENSCJAG00000005684	SMG5	85	59.549	ENSOMEG00000021330	smg5	92	60.600	Oryzias_melastigma
ENSCJAG00000005684	SMG5	100	95.079	ENSOGAG00000004966	SMG5	100	95.079	Otolemur_garnettii
ENSCJAG00000005684	SMG5	99	44.770	ENSOARG00000011963	-	99	43.665	Ovis_aries
ENSCJAG00000005684	SMG5	100	95.768	ENSOARG00000005778	SMG5	100	95.768	Ovis_aries
ENSCJAG00000005684	SMG5	100	97.933	ENSPPAG00000011996	SMG5	100	97.933	Pan_paniscus
ENSCJAG00000005684	SMG5	98	93.851	ENSPPRG00000011901	SMG5	100	93.044	Panthera_pardus
ENSCJAG00000005684	SMG5	99	85.672	ENSPTIG00000007892	SMG5	98	85.526	Panthera_tigris_altaica
ENSCJAG00000005684	SMG5	100	98.130	ENSPTRG00000023925	SMG5	100	98.130	Pan_troglodytes
ENSCJAG00000005684	SMG5	100	98.130	ENSPTRG00000049282	-	100	98.130	Pan_troglodytes
ENSCJAG00000005684	SMG5	100	98.327	ENSPANG00000011201	SMG5	100	98.327	Papio_anubis
ENSCJAG00000005684	SMG5	99	65.637	ENSPKIG00000009402	smg5	99	65.856	Paramormyrops_kingsleyae
ENSCJAG00000005684	SMG5	98	80.773	ENSPSIG00000015198	SMG5	100	80.575	Pelodiscus_sinensis
ENSCJAG00000005684	SMG5	99	60.331	ENSPMGG00000010465	smg5	99	60.628	Periophthalmus_magnuspinnatus
ENSCJAG00000005684	SMG5	100	92.633	ENSPEMG00000001819	Smg5	100	92.338	Peromyscus_maniculatus_bairdii
ENSCJAG00000005684	SMG5	58	45.775	ENSPEMG00000010022	-	95	45.250	Peromyscus_maniculatus_bairdii
ENSCJAG00000005684	SMG5	99	49.614	ENSPMAG00000000410	smg5	100	49.810	Petromyzon_marinus
ENSCJAG00000005684	SMG5	100	89.391	ENSPCIG00000018938	SMG5	100	89.784	Phascolarctos_cinereus
ENSCJAG00000005684	SMG5	50	61.152	ENSPFOG00000010191	smg5	99	62.097	Poecilia_formosa
ENSCJAG00000005684	SMG5	50	60.297	ENSPLAG00000009332	smg5	99	62.097	Poecilia_latipinna
ENSCJAG00000005684	SMG5	99	65.802	ENSPMEG00000014105	smg5	99	65.488	Poecilia_mexicana
ENSCJAG00000005684	SMG5	93	69.425	ENSPREG00000017713	smg5	99	62.097	Poecilia_reticulata
ENSCJAG00000005684	SMG5	100	98.425	ENSPPYG00000000723	SMG5	100	98.425	Pongo_abelii
ENSCJAG00000005684	SMG5	78	95.580	ENSPCAG00000008412	SMG5	81	95.580	Procavia_capensis
ENSCJAG00000005684	SMG5	100	97.244	ENSPCOG00000004741	SMG5	100	97.244	Propithecus_coquereli
ENSCJAG00000005684	SMG5	100	85.728	ENSPVAG00000016748	SMG5	100	85.728	Pteropus_vampyrus
ENSCJAG00000005684	SMG5	99	59.789	ENSPNYG00000013397	smg5	99	61.239	Pundamilia_nyererei
ENSCJAG00000005684	SMG5	100	92.240	ENSRNOG00000019590	Smg5	100	91.945	Rattus_norvegicus
ENSCJAG00000005684	SMG5	100	98.031	ENSRBIG00000027428	SMG5	100	98.031	Rhinopithecus_bieti
ENSCJAG00000005684	SMG5	100	97.933	ENSRROG00000030035	SMG5	100	97.933	Rhinopithecus_roxellana
ENSCJAG00000005684	SMG5	100	99.213	ENSSBOG00000033339	SMG5	100	99.213	Saimiri_boliviensis_boliviensis
ENSCJAG00000005684	SMG5	98	88.889	ENSSHAG00000014163	SMG5	100	89.289	Sarcophilus_harrisii
ENSCJAG00000005684	SMG5	67	39.766	ENSSHAG00000000935	-	92	40.854	Sarcophilus_harrisii
ENSCJAG00000005684	SMG5	99	33.751	ENSSHAG00000009572	-	99	32.336	Sarcophilus_harrisii
ENSCJAG00000005684	SMG5	86	40.682	ENSSHAG00000000561	-	87	40.682	Sarcophilus_harrisii
ENSCJAG00000005684	SMG5	99	65.477	ENSSFOG00015024175	smg5	99	65.887	Scleropages_formosus
ENSCJAG00000005684	SMG5	99	60.816	ENSSMAG00000013059	smg5	99	62.121	Scophthalmus_maximus
ENSCJAG00000005684	SMG5	99	60.035	ENSSDUG00000007122	smg5	92	76.869	Seriola_dumerili
ENSCJAG00000005684	SMG5	97	60.627	ENSSLDG00000011418	smg5	92	77.594	Seriola_lalandi_dorsalis
ENSCJAG00000005684	SMG5	94	80.916	ENSSARG00000012484	SMG5	100	80.916	Sorex_araneus
ENSCJAG00000005684	SMG5	94	77.508	ENSSPUG00000002260	SMG5	100	76.596	Sphenodon_punctatus
ENSCJAG00000005684	SMG5	91	76.581	ENSSPAG00000014266	smg5	99	64.717	Stegastes_partitus
ENSCJAG00000005684	SMG5	99	75.468	ENSSSCG00000039308	-	100	75.665	Sus_scrofa
ENSCJAG00000005684	SMG5	100	97.047	ENSSSCG00000006490	-	100	97.047	Sus_scrofa
ENSCJAG00000005684	SMG5	55	36.071	ENSSSCG00000037182	-	85	37.905	Sus_scrofa
ENSCJAG00000005684	SMG5	99	80.712	ENSTGUG00000003748	-	100	80.469	Taeniopygia_guttata
ENSCJAG00000005684	SMG5	99	65.076	ENSTRUG00000012580	smg5	99	64.575	Takifugu_rubripes
ENSCJAG00000005684	SMG5	99	65.310	ENSTNIG00000010303	smg5	99	65.179	Tetraodon_nigroviridis
ENSCJAG00000005684	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSCJAG00000005684	SMG5	100	91.535	ENSTTRG00000001401	SMG5	100	91.535	Tursiops_truncatus
ENSCJAG00000005684	SMG5	100	93.602	ENSUAMG00000013721	SMG5	100	92.913	Ursus_americanus
ENSCJAG00000005684	SMG5	98	89.246	ENSUMAG00000018041	SMG5	99	86.753	Ursus_maritimus
ENSCJAG00000005684	SMG5	98	86.781	ENSVPAG00000009446	SMG5	99	86.781	Vicugna_pacos
ENSCJAG00000005684	SMG5	100	94.390	ENSVVUG00000005887	SMG5	100	93.701	Vulpes_vulpes
ENSCJAG00000005684	SMG5	77	66.204	ENSXETG00000033791	SMG5	99	65.448	Xenopus_tropicalis
ENSCJAG00000005684	SMG5	99	65.830	ENSXMAG00000013499	smg5	99	65.673	Xiphophorus_maculatus