EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000011718 (Gene tree)
Gene ID: 100410338
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 113634 bases
Position: chrNTIC01035500.1:88627655-88741288
Accession: 100410338
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000046907	R3H	PF01424.22	2.4e-11	1	1
ENSCJAP00000021687	R3H	PF01424.22	2.7e-11	1	1
ENSCJAP00000021713	R3H	PF01424.22	2.8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000070896	R3HDM1-204	1334	-	ENSCJAP00000064889	444 (aa)	-	A0A2R8NCG7
ENSCJAT00000022952	R3HDM1-202	3300	-	ENSCJAP00000021713	1099 (aa)	XP_002749529	U3FG85
ENSCJAT00000059865	R3HDM1-203	2913	-	ENSCJAP00000046907	970 (aa)	XP_008997219	F7IAN2
ENSCJAT00000022925	R3HDM1-201	3132	-	ENSCJAP00000021687	1043 (aa)	-	F6QE82

Gene Model

Click here to download ENSCJAG00000011718's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000011718's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000011718	R3HDM1	99	49.602	ENSCJAG00000007365	R3HDM2	95	57.178
ENSCJAG00000011718	R3HDM1	67	51.809	ENSCJAG00000012301	ARPP21	91	51.421

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000011718	R3HDM1	100	97.909	ENSG00000048991	R3HDM1	100	97.909	Homo_sapiens
ENSCJAG00000011718	R3HDM1	88	63.467	ENSAPOG00000020850	r3hdm1	92	63.467	Acanthochromis_polyacanthus
ENSCJAG00000011718	R3HDM1	100	95.467	ENSAMEG00000014886	R3HDM1	100	95.467	Ailuropoda_melanoleuca
ENSCJAG00000011718	R3HDM1	87	58.088	ENSAOCG00000005192	r3hdm1	95	58.088	Amphiprion_ocellaris
ENSCJAG00000011718	R3HDM1	87	63.200	ENSAPEG00000016108	r3hdm1	95	63.200	Amphiprion_percula
ENSCJAG00000011718	R3HDM1	87	63.172	ENSATEG00000000232	r3hdm1	82	63.172	Anabas_testudineus
ENSCJAG00000011718	R3HDM1	100	78.752	ENSAPLG00000015231	R3HDM1	100	78.933	Anas_platyrhynchos
ENSCJAG00000011718	R3HDM1	100	76.708	ENSACAG00000001676	R3HDM1	100	77.145	Anolis_carolinensis
ENSCJAG00000011718	R3HDM1	100	98.819	ENSANAG00000035334	R3HDM1	100	98.819	Aotus_nancymaae
ENSCJAG00000011718	R3HDM1	87	62.400	ENSACLG00000027282	r3hdm1	94	62.400	Astatotilapia_calliptera
ENSCJAG00000011718	R3HDM1	89	76.418	ENSAMXG00000012861	R3HDM1	100	60.896	Astyanax_mexicanus
ENSCJAG00000011718	R3HDM1	60	40.548	ENSAMXG00000020587	arpp21	85	39.203	Astyanax_mexicanus
ENSCJAG00000011718	R3HDM1	100	55.913	ENSAMXG00000003536	r3hdm1	100	55.951	Astyanax_mexicanus
ENSCJAG00000011718	R3HDM1	100	92.985	ENSBTAG00000013302	R3HDM1	100	91.373	Bos_taurus
ENSCJAG00000011718	R3HDM1	100	95.920	ENSCAFG00000005075	R3HDM1	100	95.920	Canis_familiaris
ENSCJAG00000011718	R3HDM1	100	95.739	ENSCAFG00020016119	R3HDM1	100	95.830	Canis_lupus_dingo
ENSCJAG00000011718	R3HDM1	100	94.011	ENSCHIG00000020851	R3HDM1	100	94.011	Capra_hircus
ENSCJAG00000011718	R3HDM1	100	88.928	ENSCPOG00000012784	R3HDM1	100	92.405	Cavia_porcellus
ENSCJAG00000011718	R3HDM1	100	98.755	ENSCCAG00000027199	R3HDM1	100	98.755	Cebus_capucinus
ENSCJAG00000011718	R3HDM1	100	98.339	ENSCATG00000023642	R3HDM1	100	97.727	Cercocebus_atys
ENSCJAG00000011718	R3HDM1	100	88.918	ENSCLAG00000007962	R3HDM1	100	93.621	Chinchilla_lanigera
ENSCJAG00000011718	R3HDM1	100	94.885	ENSCSAG00000016356	R3HDM1	100	94.974	Chlorocebus_sabaeus
ENSCJAG00000011718	R3HDM1	80	93.939	ENSCHOG00000013638	R3HDM1	81	94.118	Choloepus_hoffmanni
ENSCJAG00000011718	R3HDM1	91	91.144	ENSCPBG00000009645	R3HDM1	100	91.144	Chrysemys_picta_bellii
ENSCJAG00000011718	R3HDM1	100	97.548	ENSCANG00000034748	R3HDM1	100	97.548	Colobus_angolensis_palliatus
ENSCJAG00000011718	R3HDM1	99	88.614	ENSCGRG00001012357	R3hdm1	97	88.614	Cricetulus_griseus_chok1gshd
ENSCJAG00000011718	R3HDM1	99	91.182	ENSCGRG00000012080	R3hdm1	100	93.004	Cricetulus_griseus_crigri
ENSCJAG00000011718	R3HDM1	81	65.246	ENSCSEG00000008944	r3hdm1	82	65.246	Cynoglossus_semilaevis
ENSCJAG00000011718	R3HDM1	87	61.067	ENSCVAG00000007582	r3hdm1	91	61.067	Cyprinodon_variegatus
ENSCJAG00000011718	R3HDM1	64	35.628	ENSDARG00000061081	arpp21	89	35.398	Danio_rerio
ENSCJAG00000011718	R3HDM1	100	91.680	ENSDNOG00000000771	R3HDM1	100	90.893	Dasypus_novemcinctus
ENSCJAG00000011718	R3HDM1	100	83.485	ENSETEG00000013606	R3HDM1	100	83.757	Echinops_telfairi
ENSCJAG00000011718	R3HDM1	66	41.402	ENSEBUG00000014746	arpp21	97	43.458	Eptatretus_burgeri
ENSCJAG00000011718	R3HDM1	100	97.238	ENSEASG00005007392	R3HDM1	100	95.463	Equus_asinus_asinus
ENSCJAG00000011718	R3HDM1	99	97.238	ENSECAG00000019114	R3HDM1	100	95.735	Equus_caballus
ENSCJAG00000011718	R3HDM1	91	86.691	ENSEEUG00000012589	R3HDM1	91	86.691	Erinaceus_europaeus
ENSCJAG00000011718	R3HDM1	92	52.632	ENSELUG00000014413	r3hdm1	87	78.339	Esox_lucius
ENSCJAG00000011718	R3HDM1	83	77.670	ENSELUG00000004909	R3HDM1	99	55.379	Esox_lucius
ENSCJAG00000011718	R3HDM1	100	96.961	ENSFCAG00000027113	R3HDM1	100	95.191	Felis_catus
ENSCJAG00000011718	R3HDM1	75	73.193	ENSFALG00000013731	R3HDM1	93	61.484	Ficedula_albicollis
ENSCJAG00000011718	R3HDM1	100	88.489	ENSFDAG00000016478	R3HDM1	100	93.827	Fukomys_damarensis
ENSCJAG00000011718	R3HDM1	87	57.108	ENSFHEG00000018713	r3hdm1	91	61.867	Fundulus_heteroclitus
ENSCJAG00000011718	R3HDM1	61	64.783	ENSGMOG00000006042	-	74	65.000	Gadus_morhua
ENSCJAG00000011718	R3HDM1	88	85.948	ENSGALG00000012246	R3HDM1	99	85.902	Gallus_gallus
ENSCJAG00000011718	R3HDM1	87	61.600	ENSGAFG00000006203	r3hdm1	95	61.600	Gambusia_affinis
ENSCJAG00000011718	R3HDM1	86	68.269	ENSGACG00000014925	r3hdm1	92	68.269	Gasterosteus_aculeatus
ENSCJAG00000011718	R3HDM1	99	83.099	ENSGAGG00000007840	R3HDM1	93	86.435	Gopherus_agassizii
ENSCJAG00000011718	R3HDM1	100	97.727	ENSGGOG00000008156	R3HDM1	100	97.727	Gorilla_gorilla
ENSCJAG00000011718	R3HDM1	100	89.163	ENSHGLG00000015718	R3HDM1	100	93.827	Heterocephalus_glaber_female
ENSCJAG00000011718	R3HDM1	100	88.899	ENSHGLG00100003184	-	100	93.827	Heterocephalus_glaber_male
ENSCJAG00000011718	R3HDM1	100	69.056	ENSHGLG00100015374	-	100	69.147	Heterocephalus_glaber_male
ENSCJAG00000011718	R3HDM1	87	56.373	ENSHCOG00000013366	r3hdm1	91	60.054	Hippocampus_comes
ENSCJAG00000011718	R3HDM1	53	37.943	ENSIPUG00000020552	arpp21	74	38.256	Ictalurus_punctatus
ENSCJAG00000011718	R3HDM1	89	68.615	ENSIPUG00000013629	r3hdm1	100	51.559	Ictalurus_punctatus
ENSCJAG00000011718	R3HDM1	87	68.365	ENSIPUG00000001676	R3HDM1	99	65.789	Ictalurus_punctatus
ENSCJAG00000011718	R3HDM1	100	95.005	ENSSTOG00000007572	R3HDM1	99	96.494	Ictidomys_tridecemlineatus
ENSCJAG00000011718	R3HDM1	96	70.817	ENSLACG00000005334	R3HDM1	100	70.818	Latimeria_chalumnae
ENSCJAG00000011718	R3HDM1	100	65.141	ENSLOCG00000001641	r3hdm1	100	65.806	Lepisosteus_oculatus
ENSCJAG00000011718	R3HDM1	100	91.630	ENSLAFG00000009065	R3HDM1	100	91.630	Loxodonta_africana
ENSCJAG00000011718	R3HDM1	100	97.909	ENSMFAG00000030331	R3HDM1	100	99.015	Macaca_fascicularis
ENSCJAG00000011718	R3HDM1	100	97.818	ENSMMUG00000009844	R3HDM1	100	97.818	Macaca_mulatta
ENSCJAG00000011718	R3HDM1	100	97.727	ENSMNEG00000027793	R3HDM1	100	99.015	Macaca_nemestrina
ENSCJAG00000011718	R3HDM1	100	98.000	ENSMLEG00000043189	R3HDM1	100	98.000	Mandrillus_leucophaeus
ENSCJAG00000011718	R3HDM1	87	62.198	ENSMAMG00000004532	r3hdm1	91	57.389	Mastacembelus_armatus
ENSCJAG00000011718	R3HDM1	87	62.400	ENSMZEG00005003157	r3hdm1	95	57.353	Maylandia_zebra
ENSCJAG00000011718	R3HDM1	100	78.481	ENSMGAG00000012461	R3HDM1	100	78.571	Meleagris_gallopavo
ENSCJAG00000011718	R3HDM1	100	88.246	ENSMAUG00000010315	R3hdm1	100	92.593	Mesocricetus_auratus
ENSCJAG00000011718	R3HDM1	100	94.027	ENSMICG00000005900	-	100	94.027	Microcebus_murinus
ENSCJAG00000011718	R3HDM1	95	92.849	ENSMICG00000042655	-	100	92.849	Microcebus_murinus
ENSCJAG00000011718	R3HDM1	90	77.926	ENSMODG00000000923	R3HDM1	97	78.021	Monodelphis_domestica
ENSCJAG00000011718	R3HDM1	99	57.816	ENSMALG00000009000	r3hdm1	91	57.816	Monopterus_albus
ENSCJAG00000011718	R3HDM1	100	87.753	MGP_CAROLIEiJ_G0014543	R3hdm1	100	93.305	Mus_caroli
ENSCJAG00000011718	R3HDM1	100	87.841	ENSMUSG00000056211	R3hdm1	100	93.305	Mus_musculus
ENSCJAG00000011718	R3HDM1	100	87.665	MGP_PahariEiJ_G0027779	R3hdm1	100	93.305	Mus_pahari
ENSCJAG00000011718	R3HDM1	100	88.018	MGP_SPRETEiJ_G0015350	R3hdm1	100	93.305	Mus_spretus
ENSCJAG00000011718	R3HDM1	100	95.372	ENSMPUG00000002412	R3HDM1	100	95.372	Mustela_putorius_furo
ENSCJAG00000011718	R3HDM1	100	93.038	ENSMLUG00000013824	R3HDM1	100	93.038	Myotis_lucifugus
ENSCJAG00000011718	R3HDM1	100	98.000	ENSNLEG00000008622	R3HDM1	100	98.000	Nomascus_leucogenys
ENSCJAG00000011718	R3HDM1	89	72.811	ENSMEUG00000011784	R3HDM1	100	72.912	Notamacropus_eugenii
ENSCJAG00000011718	R3HDM1	100	88.204	ENSODEG00000008607	R3HDM1	100	93.827	Octodon_degus
ENSCJAG00000011718	R3HDM1	94	67.183	ENSONIG00000012017	r3hdm1	91	67.183	Oreochromis_niloticus
ENSCJAG00000011718	R3HDM1	100	81.859	ENSOANG00000007987	R3HDM1	100	82.040	Ornithorhynchus_anatinus
ENSCJAG00000011718	R3HDM1	89	93.801	ENSOCUG00000017366	R3HDM1	98	93.801	Oryctolagus_cuniculus
ENSCJAG00000011718	R3HDM1	87	60.638	ENSORLG00000004297	r3hdm1	90	60.638	Oryzias_latipes
ENSCJAG00000011718	R3HDM1	89	61.067	ENSORLG00015017355	r3hdm1	91	61.067	Oryzias_latipes_hsok
ENSCJAG00000011718	R3HDM1	100	93.829	ENSOGAG00000003136	R3HDM1	100	93.829	Otolemur_garnettii
ENSCJAG00000011718	R3HDM1	100	93.829	ENSOARG00000010788	R3HDM1	100	93.829	Ovis_aries
ENSCJAG00000011718	R3HDM1	100	97.731	ENSPPAG00000027858	R3HDM1	100	97.731	Pan_paniscus
ENSCJAG00000011718	R3HDM1	100	94.918	ENSPPRG00000002626	R3HDM1	100	94.918	Panthera_pardus
ENSCJAG00000011718	R3HDM1	100	94.918	ENSPTIG00000016581	R3HDM1	100	94.918	Panthera_tigris_altaica
ENSCJAG00000011718	R3HDM1	100	97.731	ENSPTRG00000012494	R3HDM1	100	97.731	Pan_troglodytes
ENSCJAG00000011718	R3HDM1	100	97.940	ENSPANG00000026448	R3HDM1	100	97.940	Papio_anubis
ENSCJAG00000011718	R3HDM1	94	76.358	ENSPKIG00000004328	r3hdm1	91	76.677	Paramormyrops_kingsleyae
ENSCJAG00000011718	R3HDM1	100	79.005	ENSPSIG00000012915	R3HDM1	100	79.186	Pelodiscus_sinensis
ENSCJAG00000011718	R3HDM1	100	88.987	ENSPEMG00000015187	R3hdm1	100	92.798	Peromyscus_maniculatus_bairdii
ENSCJAG00000011718	R3HDM1	91	55.319	ENSPMAG00000003369	-	98	43.291	Petromyzon_marinus
ENSCJAG00000011718	R3HDM1	100	89.835	ENSPCIG00000002491	R3HDM1	100	84.220	Phascolarctos_cinereus
ENSCJAG00000011718	R3HDM1	87	55.718	ENSPFOG00000015036	r3hdm1	85	67.857	Poecilia_formosa
ENSCJAG00000011718	R3HDM1	87	60.212	ENSPLAG00000018042	r3hdm1	91	60.212	Poecilia_latipinna
ENSCJAG00000011718	R3HDM1	87	60.212	ENSPMEG00000023947	r3hdm1	91	60.212	Poecilia_mexicana
ENSCJAG00000011718	R3HDM1	81	68.932	ENSPREG00000007902	r3hdm1	94	60.847	Poecilia_reticulata
ENSCJAG00000011718	R3HDM1	100	96.821	ENSPPYG00000012815	R3HDM1	100	96.821	Pongo_abelii
ENSCJAG00000011718	R3HDM1	100	82.123	ENSPCAG00000006208	R3HDM1	100	81.579	Procavia_capensis
ENSCJAG00000011718	R3HDM1	100	93.974	ENSPCOG00000012698	R3HDM1	100	93.974	Propithecus_coquereli
ENSCJAG00000011718	R3HDM1	100	85.688	ENSPVAG00000006098	R3HDM1	100	85.688	Pteropus_vampyrus
ENSCJAG00000011718	R3HDM1	94	74.522	ENSPNAG00000013952	r3hdm1	89	74.603	Pygocentrus_nattereri
ENSCJAG00000011718	R3HDM1	88	76.603	ENSPNAG00000005436	R3HDM1	99	76.527	Pygocentrus_nattereri
ENSCJAG00000011718	R3HDM1	67	38.814	ENSPNAG00000004162	arpp21	58	50.646	Pygocentrus_nattereri
ENSCJAG00000011718	R3HDM1	100	87.489	ENSRNOG00000004099	R3hdm1	100	87.489	Rattus_norvegicus
ENSCJAG00000011718	R3HDM1	100	96.900	ENSRBIG00000033317	R3HDM1	100	99.262	Rhinopithecus_bieti
ENSCJAG00000011718	R3HDM1	100	98.619	ENSRROG00000034534	R3HDM1	100	97.840	Rhinopithecus_roxellana
ENSCJAG00000011718	R3HDM1	100	98.372	ENSSBOG00000020389	R3HDM1	100	98.372	Saimiri_boliviensis_boliviensis
ENSCJAG00000011718	R3HDM1	100	84.420	ENSSHAG00000016999	R3HDM1	100	84.511	Sarcophilus_harrisii
ENSCJAG00000011718	R3HDM1	89	76.435	ENSSFOG00015014134	r3hdm1	100	70.631	Scleropages_formosus
ENSCJAG00000011718	R3HDM1	100	56.800	ENSSFOG00015019851	-	100	56.533	Scleropages_formosus
ENSCJAG00000011718	R3HDM1	99	60.811	ENSSMAG00000001669	r3hdm1	99	44.777	Scophthalmus_maximus
ENSCJAG00000011718	R3HDM1	87	62.766	ENSSDUG00000010749	r3hdm1	91	62.766	Seriola_dumerili
ENSCJAG00000011718	R3HDM1	92	69.551	ENSSLDG00000004499	r3hdm1	91	57.457	Seriola_lalandi_dorsalis
ENSCJAG00000011718	R3HDM1	74	78.696	ENSSARG00000000352	-	69	82.060	Sorex_araneus
ENSCJAG00000011718	R3HDM1	100	80.380	ENSSPUG00000004167	R3HDM1	100	80.289	Sphenodon_punctatus
ENSCJAG00000011718	R3HDM1	87	63.467	ENSSPAG00000004648	r3hdm1	91	63.467	Stegastes_partitus
ENSCJAG00000011718	R3HDM1	100	96.409	ENSSSCG00000015692	R3HDM1	100	95.009	Sus_scrofa
ENSCJAG00000011718	R3HDM1	100	75.369	ENSTGUG00000011750	R3HDM1	100	73.327	Taeniopygia_guttata
ENSCJAG00000011718	R3HDM1	81	67.857	ENSTRUG00000011654	r3hdm1	91	58.098	Takifugu_rubripes
ENSCJAG00000011718	R3HDM1	82	67.732	ENSTNIG00000010362	r3hdm1	95	45.616	Tetraodon_nigroviridis
ENSCJAG00000011718	R3HDM1	100	87.738	ENSTTRG00000003935	R3HDM1	100	88.113	Tursiops_truncatus
ENSCJAG00000011718	R3HDM1	70	96.774	ENSUAMG00000024806	R3HDM1	99	93.358	Ursus_americanus
ENSCJAG00000011718	R3HDM1	100	94.142	ENSUMAG00000005552	R3HDM1	100	94.245	Ursus_maritimus
ENSCJAG00000011718	R3HDM1	97	94.118	ENSVPAG00000007333	R3HDM1	93	89.876	Vicugna_pacos
ENSCJAG00000011718	R3HDM1	100	96.961	ENSVVUG00000006457	R3HDM1	100	92.328	Vulpes_vulpes
ENSCJAG00000011718	R3HDM1	90	67.540	ENSXETG00000019330	r3hdm1	100	67.339	Xenopus_tropicalis
ENSCJAG00000011718	R3HDM1	71	50.513	ENSXCOG00000017448	r3hdm1	94	50.389	Xiphophorus_couchianus
ENSCJAG00000011718	R3HDM1	81	68.608	ENSXMAG00000007885	r3hdm1	88	62.133	Xiphophorus_maculatus