EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000011733 (Gene tree)
Gene ID: 100386861
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 15906 bases
Position: chrNTIC01014446.1:30389461-30405366
Accession: 100386861
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000021571	HVSL	PF09749.9	2.4e-63	1	1
ENSCJAP00000061766	HVSL	PF09749.9	1.8e-52	1	1
ENSCJAP00000062511	HVSL	PF09749.9	3.2e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000022803	USB1-201	798	-	ENSCJAP00000021571	265 (aa)	XP_002761061	F6TF64
ENSCJAT00000068263	USB1-202	783	-	ENSCJAP00000061766	260 (aa)	-	A0A2R8MLQ3
ENSCJAT00000077639	USB1-203	477	-	ENSCJAP00000062511	158 (aa)	-	A0A2R8MN36

Gene Model

Click here to download ENSCJAG00000011733's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000011733's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000011733	USB1	100	95.849	ENSG00000103005	USB1	100	95.849	Homo_sapiens
ENSCJAG00000011733	USB1	98	46.595	ENSAPOG00000011942	usb1	81	52.423	Acanthochromis_polyacanthus
ENSCJAG00000011733	USB1	100	84.387	ENSAMEG00000017205	USB1	100	84.015	Ailuropoda_melanoleuca
ENSCJAG00000011733	USB1	85	54.018	ENSACIG00000012234	usb1	82	54.018	Amphilophus_citrinellus
ENSCJAG00000011733	USB1	95	50.598	ENSAOCG00000014831	usb1	80	54.185	Amphiprion_ocellaris
ENSCJAG00000011733	USB1	95	50.996	ENSAPEG00000000296	usb1	80	54.626	Amphiprion_percula
ENSCJAG00000011733	USB1	99	46.768	ENSATEG00000009348	usb1	82	52.381	Anabas_testudineus
ENSCJAG00000011733	USB1	85	70.925	ENSAPLG00000002756	USB1	100	70.796	Anas_platyrhynchos
ENSCJAG00000011733	USB1	86	64.192	ENSACAG00000015481	USB1	100	64.192	Anolis_carolinensis
ENSCJAG00000011733	USB1	100	96.981	ENSANAG00000035640	USB1	100	96.981	Aotus_nancymaae
ENSCJAG00000011733	USB1	94	50.201	ENSACLG00000020586	usb1	80	53.097	Astatotilapia_calliptera
ENSCJAG00000011733	USB1	84	51.570	ENSAMXG00000040146	usb1	74	51.570	Astyanax_mexicanus
ENSCJAG00000011733	USB1	100	85.660	ENSBTAG00000015758	USB1	100	85.660	Bos_taurus
ENSCJAG00000011733	USB1	99	81.985	ENSCAFG00000008556	USB1	73	80.147	Canis_familiaris
ENSCJAG00000011733	USB1	99	81.319	ENSCAFG00020009263	USB1	99	80.220	Canis_lupus_dingo
ENSCJAG00000011733	USB1	100	84.528	ENSCHIG00000024290	USB1	100	84.528	Capra_hircus
ENSCJAG00000011733	USB1	100	90.189	ENSTSYG00000006997	USB1	100	90.189	Carlito_syrichta
ENSCJAG00000011733	USB1	74	88.034	ENSCAPG00000009057	USB1	100	71.983	Cavia_aperea
ENSCJAG00000011733	USB1	100	82.836	ENSCPOG00000014325	USB1	100	82.836	Cavia_porcellus
ENSCJAG00000011733	USB1	100	98.113	ENSCCAG00000022132	USB1	100	98.113	Cebus_capucinus
ENSCJAG00000011733	USB1	100	95.472	ENSCATG00000032174	USB1	100	95.472	Cercocebus_atys
ENSCJAG00000011733	USB1	66	88.068	ENSCLAG00000007363	USB1	100	88.068	Chinchilla_lanigera
ENSCJAG00000011733	USB1	100	96.226	ENSCSAG00000004783	USB1	100	96.226	Chlorocebus_sabaeus
ENSCJAG00000011733	USB1	92	66.122	ENSCPBG00000026943	USB1	85	67.083	Chrysemys_picta_bellii
ENSCJAG00000011733	USB1	83	31.004	ENSCSAVG00000000894	-	82	31.140	Ciona_savignyi
ENSCJAG00000011733	USB1	100	95.472	ENSCANG00000037135	USB1	100	95.472	Colobus_angolensis_palliatus
ENSCJAG00000011733	USB1	100	84.701	ENSCGRG00001011243	USB1	100	84.328	Cricetulus_griseus_chok1gshd
ENSCJAG00000011733	USB1	100	84.701	ENSCGRG00000013252	USB1	100	84.328	Cricetulus_griseus_crigri
ENSCJAG00000011733	USB1	98	47.810	ENSCSEG00000013881	usb1	83	51.082	Cynoglossus_semilaevis
ENSCJAG00000011733	USB1	85	50.000	ENSCVAG00000009252	usb1	97	50.439	Cyprinodon_variegatus
ENSCJAG00000011733	USB1	90	48.117	ENSDARG00000003841	usb1	87	48.117	Danio_rerio
ENSCJAG00000011733	USB1	100	82.264	ENSDORG00000001888	Usb1	100	82.264	Dipodomys_ordii
ENSCJAG00000011733	USB1	77	40.000	FBgn0037713	CG16790	78	40.000	Drosophila_melanogaster
ENSCJAG00000011733	USB1	95	75.658	ENSETEG00000019682	USB1	100	70.037	Echinops_telfairi
ENSCJAG00000011733	USB1	93	47.328	ENSEBUG00000005889	usb1	78	50.901	Eptatretus_burgeri
ENSCJAG00000011733	USB1	100	86.792	ENSEASG00005005484	USB1	100	86.792	Equus_asinus_asinus
ENSCJAG00000011733	USB1	100	87.547	ENSECAG00000019493	USB1	91	87.547	Equus_caballus
ENSCJAG00000011733	USB1	66	78.409	ENSEEUG00000000154	USB1	66	78.409	Erinaceus_europaeus
ENSCJAG00000011733	USB1	94	47.200	ENSELUG00000010974	usb1	88	47.755	Esox_lucius
ENSCJAG00000011733	USB1	100	86.142	ENSFCAG00000002693	USB1	100	86.142	Felis_catus
ENSCJAG00000011733	USB1	85	67.257	ENSFALG00000006876	USB1	99	62.921	Ficedula_albicollis
ENSCJAG00000011733	USB1	100	84.270	ENSFDAG00000010052	USB1	100	84.270	Fukomys_damarensis
ENSCJAG00000011733	USB1	92	45.062	ENSFHEG00000012334	usb1	78	53.061	Fundulus_heteroclitus
ENSCJAG00000011733	USB1	84	51.121	ENSGMOG00000004228	usb1	99	51.121	Gadus_morhua
ENSCJAG00000011733	USB1	84	67.411	ENSGALG00000035604	USB1	100	63.158	Gallus_gallus
ENSCJAG00000011733	USB1	98	48.014	ENSGAFG00000021890	usb1	82	52.632	Gambusia_affinis
ENSCJAG00000011733	USB1	85	52.212	ENSGACG00000003257	usb1	81	52.212	Gasterosteus_aculeatus
ENSCJAG00000011733	USB1	100	63.636	ENSGAGG00000022572	USB1	100	61.905	Gopherus_agassizii
ENSCJAG00000011733	USB1	100	96.604	ENSGGOG00000017147	USB1	100	96.604	Gorilla_gorilla
ENSCJAG00000011733	USB1	94	51.004	ENSHBUG00000009823	usb1	81	53.744	Haplochromis_burtoni
ENSCJAG00000011733	USB1	100	85.019	ENSHGLG00000016078	USB1	98	85.019	Heterocephalus_glaber_female
ENSCJAG00000011733	USB1	100	85.019	ENSHGLG00100005562	USB1	98	85.019	Heterocephalus_glaber_male
ENSCJAG00000011733	USB1	82	54.839	ENSHCOG00000015633	usb1	86	54.709	Hippocampus_comes
ENSCJAG00000011733	USB1	98	47.569	ENSIPUG00000008601	usb1	84	51.029	Ictalurus_punctatus
ENSCJAG00000011733	USB1	100	84.615	ENSSTOG00000007548	USB1	100	84.615	Ictidomys_tridecemlineatus
ENSCJAG00000011733	USB1	100	86.517	ENSJJAG00000021859	Usb1	100	86.517	Jaculus_jaculus
ENSCJAG00000011733	USB1	96	49.416	ENSKMAG00000007200	usb1	80	53.304	Kryptolebias_marmoratus
ENSCJAG00000011733	USB1	87	48.485	ENSLBEG00000008452	usb1	64	53.684	Labrus_bergylta
ENSCJAG00000011733	USB1	85	55.895	ENSLACG00000000105	USB1	76	56.332	Latimeria_chalumnae
ENSCJAG00000011733	USB1	95	53.725	ENSLOCG00000000465	usb1	85	54.772	Lepisosteus_oculatus
ENSCJAG00000011733	USB1	100	65.185	ENSLAFG00000002267	USB1	100	65.556	Loxodonta_africana
ENSCJAG00000011733	USB1	100	95.849	ENSMFAG00000003926	USB1	100	95.849	Macaca_fascicularis
ENSCJAG00000011733	USB1	100	95.849	ENSMMUG00000022669	USB1	100	95.849	Macaca_mulatta
ENSCJAG00000011733	USB1	100	95.472	ENSMNEG00000042487	USB1	100	95.472	Macaca_nemestrina
ENSCJAG00000011733	USB1	100	95.849	ENSMLEG00000028756	USB1	100	95.849	Mandrillus_leucophaeus
ENSCJAG00000011733	USB1	98	48.736	ENSMAMG00000015092	usb1	81	53.540	Mastacembelus_armatus
ENSCJAG00000011733	USB1	94	50.201	ENSMZEG00005010008	usb1	80	53.097	Maylandia_zebra
ENSCJAG00000011733	USB1	100	85.019	ENSMAUG00000007832	Usb1	100	85.019	Mesocricetus_auratus
ENSCJAG00000011733	USB1	100	91.139	ENSMICG00000004900	USB1	100	91.139	Microcebus_murinus
ENSCJAG00000011733	USB1	100	83.895	ENSMOCG00000022647	Usb1	100	83.895	Microtus_ochrogaster
ENSCJAG00000011733	USB1	86	52.193	ENSMMOG00000000490	usb1	88	52.193	Mola_mola
ENSCJAG00000011733	USB1	100	68.284	ENSMODG00000014067	USB1	100	67.164	Monodelphis_domestica
ENSCJAG00000011733	USB1	95	49.402	ENSMALG00000005930	usb1	80	52.863	Monopterus_albus
ENSCJAG00000011733	USB1	100	81.273	MGP_CAROLIEiJ_G0031421	Usb1	100	84.956	Mus_caroli
ENSCJAG00000011733	USB1	100	81.648	ENSMUSG00000031792	Usb1	100	85.841	Mus_musculus
ENSCJAG00000011733	USB1	100	82.772	MGP_PahariEiJ_G0023019	Usb1	100	88.034	Mus_pahari
ENSCJAG00000011733	USB1	100	80.899	MGP_SPRETEiJ_G0032540	Usb1	100	80.899	Mus_spretus
ENSCJAG00000011733	USB1	100	82.156	ENSMPUG00000004684	USB1	96	81.413	Mustela_putorius_furo
ENSCJAG00000011733	USB1	87	88.745	ENSMLUG00000007400	USB1	100	88.745	Myotis_lucifugus
ENSCJAG00000011733	USB1	100	84.387	ENSNGAG00000009703	Usb1	100	84.387	Nannospalax_galili
ENSCJAG00000011733	USB1	94	48.571	ENSNBRG00000008747	usb1	99	52.804	Neolamprologus_brichardi
ENSCJAG00000011733	USB1	100	92.405	ENSNLEG00000003340	USB1	100	96.800	Nomascus_leucogenys
ENSCJAG00000011733	USB1	94	58.333	ENSMEUG00000003328	-	100	59.211	Notamacropus_eugenii
ENSCJAG00000011733	USB1	74	81.197	ENSOPRG00000011803	USB1	72	84.848	Ochotona_princeps
ENSCJAG00000011733	USB1	100	82.022	ENSODEG00000016214	USB1	100	82.022	Octodon_degus
ENSCJAG00000011733	USB1	98	47.872	ENSONIG00000011063	usb1	81	53.304	Oreochromis_niloticus
ENSCJAG00000011733	USB1	85	73.778	ENSOANG00000012118	USB1	94	73.778	Ornithorhynchus_anatinus
ENSCJAG00000011733	USB1	94	47.791	ENSORLG00000012479	usb1	83	50.439	Oryzias_latipes
ENSCJAG00000011733	USB1	94	48.193	ENSORLG00020018671	usb1	84	50.877	Oryzias_latipes_hni
ENSCJAG00000011733	USB1	86	50.877	ENSORLG00015009679	usb1	84	50.877	Oryzias_latipes_hsok
ENSCJAG00000011733	USB1	85	50.442	ENSOMEG00000012930	usb1	82	50.000	Oryzias_melastigma
ENSCJAG00000011733	USB1	95	90.000	ENSOGAG00000003273	USB1	100	84.231	Otolemur_garnettii
ENSCJAG00000011733	USB1	95	83.004	ENSOARG00000001107	USB1	93	85.185	Ovis_aries
ENSCJAG00000011733	USB1	100	96.226	ENSPPAG00000042137	USB1	100	96.226	Pan_paniscus
ENSCJAG00000011733	USB1	100	85.393	ENSPPRG00000024797	USB1	100	85.393	Panthera_pardus
ENSCJAG00000011733	USB1	100	85.393	ENSPTIG00000007506	USB1	100	85.393	Panthera_tigris_altaica
ENSCJAG00000011733	USB1	100	90.769	ENSPTRG00000008172	USB1	100	96.729	Pan_troglodytes
ENSCJAG00000011733	USB1	100	95.849	ENSPANG00000025138	USB1	100	95.849	Papio_anubis
ENSCJAG00000011733	USB1	96	52.157	ENSPKIG00000015109	usb1	76	55.111	Paramormyrops_kingsleyae
ENSCJAG00000011733	USB1	85	53.982	ENSPSIG00000004305	USB1	100	54.709	Pelodiscus_sinensis
ENSCJAG00000011733	USB1	84	52.466	ENSPMGG00000017725	usb1	85	52.466	Periophthalmus_magnuspinnatus
ENSCJAG00000011733	USB1	100	83.824	ENSPEMG00000016183	Usb1	100	81.618	Peromyscus_maniculatus_bairdii
ENSCJAG00000011733	USB1	85	50.442	ENSPMAG00000000462	usb1	95	50.442	Petromyzon_marinus
ENSCJAG00000011733	USB1	98	48.188	ENSPFOG00000011130	usb1	82	52.193	Poecilia_formosa
ENSCJAG00000011733	USB1	98	48.188	ENSPLAG00000009820	usb1	82	52.193	Poecilia_latipinna
ENSCJAG00000011733	USB1	98	48.014	ENSPMEG00000006402	usb1	82	52.193	Poecilia_mexicana
ENSCJAG00000011733	USB1	97	44.444	ENSPREG00000001047	usb1	79	53.571	Poecilia_reticulata
ENSCJAG00000011733	USB1	95	92.857	ENSPPYG00000007401	USB1	100	92.857	Pongo_abelii
ENSCJAG00000011733	USB1	100	91.139	ENSPCOG00000022612	USB1	100	91.139	Propithecus_coquereli
ENSCJAG00000011733	USB1	100	81.509	ENSPVAG00000004613	USB1	100	81.509	Pteropus_vampyrus
ENSCJAG00000011733	USB1	94	51.004	ENSPNYG00000022262	usb1	81	53.744	Pundamilia_nyererei
ENSCJAG00000011733	USB1	98	47.893	ENSPNAG00000011736	usb1	81	50.209	Pygocentrus_nattereri
ENSCJAG00000011733	USB1	100	83.895	ENSRNOG00000013216	Usb1	100	83.895	Rattus_norvegicus
ENSCJAG00000011733	USB1	100	93.671	ENSRBIG00000044466	USB1	100	97.664	Rhinopithecus_bieti
ENSCJAG00000011733	USB1	100	96.226	ENSRROG00000029211	USB1	100	96.226	Rhinopithecus_roxellana
ENSCJAG00000011733	USB1	100	96.981	ENSSBOG00000029362	USB1	100	96.981	Saimiri_boliviensis_boliviensis
ENSCJAG00000011733	USB1	83	72.603	ENSSHAG00000006993	USB1	94	70.042	Sarcophilus_harrisii
ENSCJAG00000011733	USB1	87	56.277	ENSSFOG00015023663	usb1	73	56.277	Scleropages_formosus
ENSCJAG00000011733	USB1	98	48.913	ENSSMAG00000015834	usb1	99	47.138	Scophthalmus_maximus
ENSCJAG00000011733	USB1	85	55.357	ENSSDUG00000002949	usb1	83	55.357	Seriola_dumerili
ENSCJAG00000011733	USB1	98	49.811	ENSSLDG00000014174	usb1	80	54.867	Seriola_lalandi_dorsalis
ENSCJAG00000011733	USB1	81	69.159	ENSSPUG00000006741	USB1	100	69.159	Sphenodon_punctatus
ENSCJAG00000011733	USB1	86	52.423	ENSSPAG00000007484	usb1	99	46.290	Stegastes_partitus
ENSCJAG00000011733	USB1	100	85.874	ENSSSCG00000002807	USB1	100	84.387	Sus_scrofa
ENSCJAG00000011733	USB1	80	70.283	ENSTGUG00000004792	USB1	87	68.919	Taeniopygia_guttata
ENSCJAG00000011733	USB1	98	48.134	ENSTRUG00000021069	usb1	86	50.649	Takifugu_rubripes
ENSCJAG00000011733	USB1	98	46.038	ENSTNIG00000000626	usb1	83	48.661	Tetraodon_nigroviridis
ENSCJAG00000011733	USB1	88	62.931	ENSTBEG00000001507	USB1	100	62.931	Tupaia_belangeri
ENSCJAG00000011733	USB1	100	84.015	ENSUAMG00000016823	USB1	100	84.015	Ursus_americanus
ENSCJAG00000011733	USB1	81	88.318	ENSUMAG00000021369	USB1	100	88.318	Ursus_maritimus
ENSCJAG00000011733	USB1	95	52.667	ENSVPAG00000009834	-	59	89.167	Vicugna_pacos
ENSCJAG00000011733	USB1	99	82.463	ENSVVUG00000023700	USB1	93	85.892	Vulpes_vulpes
ENSCJAG00000011733	USB1	82	55.505	ENSXETG00000013795	usb1	94	53.814	Xenopus_tropicalis
ENSCJAG00000011733	USB1	94	50.000	ENSXMAG00000024687	usb1	67	52.632	Xiphophorus_maculatus