EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000011865 (Gene tree)
Gene ID: 100388797
Gene Symbol: PNLDC1
Alias: FLJ40240|dJ195P10.2
Full Name: PARN like%2C ribonuclease domain containing 1
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 21446 bases
Position: chrNTIC01022223.1:10264417-10285862
Accession: 21185
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000021837	CAF1	PF04857.20	4.4e-78	1	1
ENSCJAP00000021827	CAF1	PF04857.20	2.9e-71	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000023081	PNLDC1-201	1593	-	ENSCJAP00000021837	530 (aa)	-	F6RUP1
ENSCJAT00000023070	PNLDC1-202	1524	-	ENSCJAP00000021827	507 (aa)	-	F6RVK4

Gene Model

Click here to download ENSCJAG00000011865's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000011865's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000011865	PNLDC1	99	93.083	ENSG00000146453	PNLDC1	99	92.830	Homo_sapiens
ENSCJAG00000011865	PNLDC1	99	85.657	ENSAMEG00000015371	PNLDC1	99	84.659	Ailuropoda_melanoleuca
ENSCJAG00000011865	PNLDC1	99	56.863	ENSAPLG00000007014	PNLDC1	97	57.059	Anas_platyrhynchos
ENSCJAG00000011865	PNLDC1	99	59.510	ENSACAG00000013667	PNLDC1	99	59.510	Anolis_carolinensis
ENSCJAG00000011865	PNLDC1	100	96.422	ENSANAG00000034713	PNLDC1	100	96.477	Aotus_nancymaae
ENSCJAG00000011865	PNLDC1	99	86.706	ENSBTAG00000015166	PNLDC1	96	86.561	Bos_taurus
ENSCJAG00000011865	PNLDC1	100	85.687	ENSCAFG00000000740	PNLDC1	100	85.687	Canis_familiaris
ENSCJAG00000011865	PNLDC1	100	83.725	ENSCAFG00020017742	PNLDC1	100	83.677	Canis_lupus_dingo
ENSCJAG00000011865	PNLDC1	100	83.890	ENSCHIG00000003141	PNLDC1	100	83.647	Capra_hircus
ENSCJAG00000011865	PNLDC1	100	88.512	ENSTSYG00000005606	PNLDC1	100	88.512	Carlito_syrichta
ENSCJAG00000011865	PNLDC1	100	60.264	ENSCAPG00000011893	PNLDC1	100	60.264	Cavia_aperea
ENSCJAG00000011865	PNLDC1	99	78.458	ENSCPOG00000019565	PNLDC1	100	76.692	Cavia_porcellus
ENSCJAG00000011865	PNLDC1	100	96.798	ENSCCAG00000026232	PNLDC1	100	96.798	Cebus_capucinus
ENSCJAG00000011865	PNLDC1	100	92.090	ENSCATG00000033196	PNLDC1	100	92.090	Cercocebus_atys
ENSCJAG00000011865	PNLDC1	99	82.264	ENSCLAG00000003228	PNLDC1	99	82.264	Chinchilla_lanigera
ENSCJAG00000011865	PNLDC1	99	92.702	ENSCSAG00000012478	PNLDC1	98	92.534	Chlorocebus_sabaeus
ENSCJAG00000011865	PNLDC1	95	65.226	ENSCPBG00000004050	PNLDC1	100	64.062	Chrysemys_picta_bellii
ENSCJAG00000011865	PNLDC1	99	92.871	ENSCANG00000043076	PNLDC1	97	92.885	Colobus_angolensis_palliatus
ENSCJAG00000011865	PNLDC1	99	81.262	ENSCGRG00001007470	-	99	80.226	Cricetulus_griseus_chok1gshd
ENSCJAG00000011865	PNLDC1	100	65.160	ENSCGRG00001011981	-	99	65.160	Cricetulus_griseus_chok1gshd
ENSCJAG00000011865	PNLDC1	100	67.608	ENSCGRG00000003103	-	99	67.608	Cricetulus_griseus_crigri
ENSCJAG00000011865	PNLDC1	99	81.262	ENSCGRG00000010221	-	99	80.226	Cricetulus_griseus_crigri
ENSCJAG00000011865	PNLDC1	100	83.271	ENSDNOG00000013709	PNLDC1	100	83.271	Dasypus_novemcinctus
ENSCJAG00000011865	PNLDC1	100	77.715	ENSDORG00000011517	Pnldc1	99	85.623	Dipodomys_ordii
ENSCJAG00000011865	PNLDC1	96	74.691	ENSETEG00000007587	PNLDC1	99	73.887	Echinops_telfairi
ENSCJAG00000011865	PNLDC1	100	78.148	ENSEASG00005019029	PNLDC1	100	78.148	Equus_asinus_asinus
ENSCJAG00000011865	PNLDC1	100	86.441	ENSECAG00000012898	PNLDC1	100	86.441	Equus_caballus
ENSCJAG00000011865	PNLDC1	71	84.375	ENSEEUG00000005717	-	86	84.375	Erinaceus_europaeus
ENSCJAG00000011865	PNLDC1	100	86.441	ENSFCAG00000002848	PNLDC1	100	86.441	Felis_catus
ENSCJAG00000011865	PNLDC1	98	56.859	ENSFALG00000012081	PNLDC1	99	56.859	Ficedula_albicollis
ENSCJAG00000011865	PNLDC1	100	82.674	ENSFDAG00000021334	PNLDC1	100	82.674	Fukomys_damarensis
ENSCJAG00000011865	PNLDC1	79	57.720	ENSGALG00000011624	PNLDC1	82	57.720	Gallus_gallus
ENSCJAG00000011865	PNLDC1	99	65.476	ENSGAGG00000015276	PNLDC1	100	65.909	Gopherus_agassizii
ENSCJAG00000011865	PNLDC1	100	92.655	ENSGGOG00000014077	PNLDC1	100	92.655	Gorilla_gorilla
ENSCJAG00000011865	PNLDC1	100	83.427	ENSHGLG00000006889	PNLDC1	100	83.427	Heterocephalus_glaber_female
ENSCJAG00000011865	PNLDC1	100	83.427	ENSHGLG00100018275	PNLDC1	100	83.427	Heterocephalus_glaber_male
ENSCJAG00000011865	PNLDC1	99	87.129	ENSSTOG00000005595	PNLDC1	99	86.200	Ictidomys_tridecemlineatus
ENSCJAG00000011865	PNLDC1	100	77.925	ENSJJAG00000009937	Pnldc1	99	77.925	Jaculus_jaculus
ENSCJAG00000011865	PNLDC1	59	83.810	ENSLAFG00000030189	PNLDC1	92	83.810	Loxodonta_africana
ENSCJAG00000011865	PNLDC1	100	92.467	ENSMFAG00000041296	PNLDC1	100	92.467	Macaca_fascicularis
ENSCJAG00000011865	PNLDC1	100	92.467	ENSMMUG00000004181	PNLDC1	100	92.467	Macaca_mulatta
ENSCJAG00000011865	PNLDC1	100	92.279	ENSMNEG00000034271	PNLDC1	100	92.279	Macaca_nemestrina
ENSCJAG00000011865	PNLDC1	100	88.889	ENSMLEG00000044059	PNLDC1	100	88.889	Mandrillus_leucophaeus
ENSCJAG00000011865	PNLDC1	99	57.283	ENSMGAG00000012470	PNLDC1	97	57.480	Meleagris_gallopavo
ENSCJAG00000011865	PNLDC1	99	67.589	ENSMAUG00000012298	Pnldc1	100	67.170	Mesocricetus_auratus
ENSCJAG00000011865	PNLDC1	100	87.947	ENSMICG00000008021	PNLDC1	100	87.947	Microcebus_murinus
ENSCJAG00000011865	PNLDC1	100	84.428	ENSMOCG00000014287	Pnldc1	100	84.428	Microtus_ochrogaster
ENSCJAG00000011865	PNLDC1	99	75.149	ENSMODG00000007420	PNLDC1	99	74.102	Monodelphis_domestica
ENSCJAG00000011865	PNLDC1	100	84.181	MGP_CAROLIEiJ_G0021045	Pnldc1	100	84.181	Mus_caroli
ENSCJAG00000011865	PNLDC1	100	84.369	ENSMUSG00000073460	Pnldc1	100	86.984	Mus_musculus
ENSCJAG00000011865	PNLDC1	100	84.369	MGP_PahariEiJ_G0023361	Pnldc1	100	84.369	Mus_pahari
ENSCJAG00000011865	PNLDC1	100	84.181	MGP_SPRETEiJ_G0021975	Pnldc1	100	84.181	Mus_spretus
ENSCJAG00000011865	PNLDC1	99	84.585	ENSMPUG00000004920	PNLDC1	99	84.340	Mustela_putorius_furo
ENSCJAG00000011865	PNLDC1	100	84.369	ENSMLUG00000000747	PNLDC1	100	84.369	Myotis_lucifugus
ENSCJAG00000011865	PNLDC1	100	85.499	ENSNGAG00000017714	Pnldc1	99	85.499	Nannospalax_galili
ENSCJAG00000011865	PNLDC1	99	92.277	ENSNLEG00000011282	PNLDC1	98	92.110	Nomascus_leucogenys
ENSCJAG00000011865	PNLDC1	63	61.562	ENSMEUG00000011926	-	64	61.562	Notamacropus_eugenii
ENSCJAG00000011865	PNLDC1	57	64.583	ENSMEUG00000014042	-	100	64.583	Notamacropus_eugenii
ENSCJAG00000011865	PNLDC1	78	84.225	ENSOPRG00000003813	PNLDC1	78	84.225	Ochotona_princeps
ENSCJAG00000011865	PNLDC1	100	82.674	ENSODEG00000008047	PNLDC1	100	82.674	Octodon_degus
ENSCJAG00000011865	PNLDC1	99	57.371	ENSOANG00000012199	PNLDC1	99	58.491	Ornithorhynchus_anatinus
ENSCJAG00000011865	PNLDC1	100	85.433	ENSOCUG00000013867	PNLDC1	100	85.122	Oryctolagus_cuniculus
ENSCJAG00000011865	PNLDC1	99	88.515	ENSOGAG00000007331	PNLDC1	100	87.902	Otolemur_garnettii
ENSCJAG00000011865	PNLDC1	100	83.661	ENSOARG00000004585	PNLDC1	100	83.427	Ovis_aries
ENSCJAG00000011865	PNLDC1	100	92.090	ENSPPAG00000026651	PNLDC1	100	92.090	Pan_paniscus
ENSCJAG00000011865	PNLDC1	100	86.441	ENSPPRG00000012854	PNLDC1	100	86.441	Panthera_pardus
ENSCJAG00000011865	PNLDC1	99	84.554	ENSPTIG00000011501	PNLDC1	98	82.443	Panthera_tigris_altaica
ENSCJAG00000011865	PNLDC1	100	92.090	ENSPTRG00000018762	PNLDC1	100	92.090	Pan_troglodytes
ENSCJAG00000011865	PNLDC1	100	92.655	ENSPANG00000022009	PNLDC1	100	92.655	Papio_anubis
ENSCJAG00000011865	PNLDC1	64	56.308	ENSPSIG00000011419	PNLDC1	99	56.308	Pelodiscus_sinensis
ENSCJAG00000011865	PNLDC1	100	84.934	ENSPEMG00000016301	Pnldc1	99	84.934	Peromyscus_maniculatus_bairdii
ENSCJAG00000011865	PNLDC1	86	30.204	ENSPMAG00000003956	parn	90	30.408	Petromyzon_marinus
ENSCJAG00000011865	PNLDC1	87	75.399	ENSPCIG00000023412	PNLDC1	100	75.399	Phascolarctos_cinereus
ENSCJAG00000011865	PNLDC1	100	86.654	ENSPPYG00000017148	PNLDC1	100	86.654	Pongo_abelii
ENSCJAG00000011865	PNLDC1	99	75.379	ENSPCAG00000014169	PNLDC1	99	75.379	Procavia_capensis
ENSCJAG00000011865	PNLDC1	100	87.947	ENSPCOG00000025722	PNLDC1	100	87.947	Propithecus_coquereli
ENSCJAG00000011865	PNLDC1	72	88.312	ENSPVAG00000005325	PNLDC1	73	88.312	Pteropus_vampyrus
ENSCJAG00000011865	PNLDC1	100	84.369	ENSRNOG00000023140	Pnldc1	100	84.369	Rattus_norvegicus
ENSCJAG00000011865	PNLDC1	100	92.467	ENSRBIG00000033806	PNLDC1	100	92.467	Rhinopithecus_bieti
ENSCJAG00000011865	PNLDC1	99	93.267	ENSRROG00000043919	PNLDC1	97	93.281	Rhinopithecus_roxellana
ENSCJAG00000011865	PNLDC1	100	97.175	ENSSBOG00000019135	PNLDC1	100	97.175	Saimiri_boliviensis_boliviensis
ENSCJAG00000011865	PNLDC1	99	75.446	ENSSHAG00000015192	PNLDC1	97	75.644	Sarcophilus_harrisii
ENSCJAG00000011865	PNLDC1	57	65.052	ENSSPUG00000004627	PNLDC1	99	64.286	Sphenodon_punctatus
ENSCJAG00000011865	PNLDC1	99	84.554	ENSSSCG00000004046	PNLDC1	99	84.418	Sus_scrofa
ENSCJAG00000011865	PNLDC1	95	57.938	ENSTGUG00000011418	PNLDC1	99	57.938	Taeniopygia_guttata
ENSCJAG00000011865	PNLDC1	99	76.634	ENSTBEG00000009131	PNLDC1	98	76.529	Tupaia_belangeri
ENSCJAG00000011865	PNLDC1	73	80.311	ENSTTRG00000010409	PNLDC1	73	80.311	Tursiops_truncatus
ENSCJAG00000011865	PNLDC1	99	73.148	ENSUAMG00000015783	PNLDC1	99	73.148	Ursus_americanus
ENSCJAG00000011865	PNLDC1	99	78.752	ENSUMAG00000011903	PNLDC1	99	78.752	Ursus_maritimus
ENSCJAG00000011865	PNLDC1	96	87.064	ENSVVUG00000006586	PNLDC1	99	86.242	Vulpes_vulpes