EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000013962 (Gene tree)
Gene ID: 100399143
Gene Symbol: LSG1
Alias: FLJ11301
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 41745 bases
Position: chrNTIC01006668.1:16295859-16337603
Accession: 25652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000049731	MMR_HSR1	PF01926.23	3.9e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000054360	LSG1-201	1977	-	ENSCJAP00000049731	658 (aa)	-	F6URU6

Gene Model

Click here to download ENSCJAG00000013962's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000013962's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000013962	LSG1	50	37.441	ENSCJAG00000019996	GNL1	51	37.681

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000013962	LSG1	100	93.161	ENSG00000041802	LSG1	98	95.977	Homo_sapiens
ENSCJAG00000013962	LSG1	99	64.394	ENSAPOG00000009694	lsg1	99	65.000	Acanthochromis_polyacanthus
ENSCJAG00000013962	LSG1	99	82.549	ENSAMEG00000009343	LSG1	99	82.549	Ailuropoda_melanoleuca
ENSCJAG00000013962	LSG1	98	64.907	ENSACIG00000012406	lsg1	99	64.795	Amphilophus_citrinellus
ENSCJAG00000013962	LSG1	99	64.091	ENSAOCG00000016066	lsg1	99	64.545	Amphiprion_ocellaris
ENSCJAG00000013962	LSG1	99	64.697	ENSAPEG00000003252	lsg1	99	64.697	Amphiprion_percula
ENSCJAG00000013962	LSG1	98	65.023	ENSATEG00000011794	lsg1	99	64.653	Anabas_testudineus
ENSCJAG00000013962	LSG1	95	65.238	ENSACAG00000004222	LSG1	99	64.229	Anolis_carolinensis
ENSCJAG00000013962	LSG1	100	97.568	ENSANAG00000021153	LSG1	100	97.568	Aotus_nancymaae
ENSCJAG00000013962	LSG1	99	64.018	ENSACLG00000000520	lsg1	99	65.106	Astatotilapia_calliptera
ENSCJAG00000013962	LSG1	99	62.537	ENSAMXG00000008271	lsg1	99	63.293	Astyanax_mexicanus
ENSCJAG00000013962	LSG1	100	84.825	ENSBTAG00000008461	LSG1	100	84.825	Bos_taurus
ENSCJAG00000013962	LSG1	66	52.041	WBGene00016907	C53H9.2	89	58.537	Caenorhabditis_elegans
ENSCJAG00000013962	LSG1	95	84.800	ENSCAFG00000013445	LSG1	99	84.800	Canis_familiaris
ENSCJAG00000013962	LSG1	99	83.359	ENSCAFG00020002216	LSG1	99	84.430	Canis_lupus_dingo
ENSCJAG00000013962	LSG1	99	84.954	ENSCHIG00000015769	LSG1	99	84.954	Capra_hircus
ENSCJAG00000013962	LSG1	100	89.833	ENSTSYG00000001447	LSG1	100	89.833	Carlito_syrichta
ENSCJAG00000013962	LSG1	95	76.274	ENSCAPG00000009856	LSG1	100	76.640	Cavia_aperea
ENSCJAG00000013962	LSG1	100	96.353	ENSCCAG00000035744	LSG1	100	96.353	Cebus_capucinus
ENSCJAG00000013962	LSG1	100	93.009	ENSCATG00000042060	LSG1	100	91.489	Cercocebus_atys
ENSCJAG00000013962	LSG1	100	93.617	ENSCSAG00000008796	LSG1	92	93.617	Chlorocebus_sabaeus
ENSCJAG00000013962	LSG1	99	68.405	ENSCPBG00000015941	LSG1	83	69.001	Chrysemys_picta_bellii
ENSCJAG00000013962	LSG1	66	63.158	ENSCING00000007079	-	91	63.158	Ciona_intestinalis
ENSCJAG00000013962	LSG1	75	55.144	ENSCSAVG00000002514	-	96	55.144	Ciona_savignyi
ENSCJAG00000013962	LSG1	100	93.161	ENSCANG00000030709	LSG1	100	93.161	Colobus_angolensis_palliatus
ENSCJAG00000013962	LSG1	100	83.333	ENSCGRG00001019846	Lsg1	100	83.333	Cricetulus_griseus_chok1gshd
ENSCJAG00000013962	LSG1	100	83.333	ENSCGRG00000014617	Lsg1	100	83.333	Cricetulus_griseus_crigri
ENSCJAG00000013962	LSG1	98	65.191	ENSCSEG00000008522	lsg1	99	64.222	Cynoglossus_semilaevis
ENSCJAG00000013962	LSG1	97	65.679	ENSCVAG00000002484	lsg1	99	65.805	Cyprinodon_variegatus
ENSCJAG00000013962	LSG1	99	67.021	ENSDARG00000015352	lsg1	99	67.173	Danio_rerio
ENSCJAG00000013962	LSG1	100	83.686	ENSDNOG00000006224	LSG1	100	83.384	Dasypus_novemcinctus
ENSCJAG00000013962	LSG1	82	57.377	FBgn0266284	Ns3	91	55.642	Drosophila_melanogaster
ENSCJAG00000013962	LSG1	88	86.667	ENSETEG00000003888	LSG1	89	86.667	Echinops_telfairi
ENSCJAG00000013962	LSG1	88	56.784	ENSEBUG00000003119	lsg1	85	55.611	Eptatretus_burgeri
ENSCJAG00000013962	LSG1	100	86.495	ENSEASG00005000678	LSG1	100	86.495	Equus_asinus_asinus
ENSCJAG00000013962	LSG1	100	86.798	ENSECAG00000017659	LSG1	100	86.798	Equus_caballus
ENSCJAG00000013962	LSG1	87	80.172	ENSEEUG00000015217	LSG1	87	80.172	Erinaceus_europaeus
ENSCJAG00000013962	LSG1	99	61.573	ENSELUG00000023973	lsg1	99	61.422	Esox_lucius
ENSCJAG00000013962	LSG1	99	86.322	ENSFCAG00000024957	LSG1	99	86.322	Felis_catus
ENSCJAG00000013962	LSG1	92	66.287	ENSFALG00000007210	LSG1	94	65.798	Ficedula_albicollis
ENSCJAG00000013962	LSG1	100	78.604	ENSFDAG00000017373	LSG1	100	78.604	Fukomys_damarensis
ENSCJAG00000013962	LSG1	97	64.441	ENSFHEG00000003680	lsg1	99	63.636	Fundulus_heteroclitus
ENSCJAG00000013962	LSG1	82	71.250	ENSGMOG00000015834	lsg1	88	69.685	Gadus_morhua
ENSCJAG00000013962	LSG1	99	64.448	ENSGALG00000007058	LSG1	87	63.008	Gallus_gallus
ENSCJAG00000013962	LSG1	97	65.523	ENSGAFG00000015831	lsg1	99	64.840	Gambusia_affinis
ENSCJAG00000013962	LSG1	98	62.154	ENSGACG00000009323	lsg1	99	61.261	Gasterosteus_aculeatus
ENSCJAG00000013962	LSG1	100	93.313	ENSGGOG00000000520	LSG1	100	93.313	Gorilla_gorilla
ENSCJAG00000013962	LSG1	99	63.952	ENSHBUG00000005659	lsg1	99	65.046	Haplochromis_burtoni
ENSCJAG00000013962	LSG1	100	76.320	ENSHGLG00000017390	LSG1	100	76.169	Heterocephalus_glaber_female
ENSCJAG00000013962	LSG1	100	76.320	ENSHGLG00100018587	LSG1	100	76.169	Heterocephalus_glaber_male
ENSCJAG00000013962	LSG1	97	63.707	ENSHCOG00000016848	lsg1	99	63.526	Hippocampus_comes
ENSCJAG00000013962	LSG1	99	65.060	ENSIPUG00000008631	lsg1	99	65.060	Ictalurus_punctatus
ENSCJAG00000013962	LSG1	89	83.299	ENSSTOG00000010234	LSG1	100	83.299	Ictidomys_tridecemlineatus
ENSCJAG00000013962	LSG1	100	80.967	ENSJJAG00000015513	Lsg1	100	80.967	Jaculus_jaculus
ENSCJAG00000013962	LSG1	98	63.101	ENSKMAG00000009681	lsg1	99	62.766	Kryptolebias_marmoratus
ENSCJAG00000013962	LSG1	99	65.667	ENSLACG00000013399	LSG1	99	65.667	Latimeria_chalumnae
ENSCJAG00000013962	LSG1	98	65.789	ENSLOCG00000004918	lsg1	99	64.531	Lepisosteus_oculatus
ENSCJAG00000013962	LSG1	100	83.460	ENSLAFG00000012919	-	100	83.460	Loxodonta_africana
ENSCJAG00000013962	LSG1	100	93.465	ENSMFAG00000039903	LSG1	100	91.945	Macaca_fascicularis
ENSCJAG00000013962	LSG1	100	93.617	ENSMMUG00000010708	LSG1	100	93.617	Macaca_mulatta
ENSCJAG00000013962	LSG1	100	93.313	ENSMNEG00000031538	LSG1	100	91.793	Macaca_nemestrina
ENSCJAG00000013962	LSG1	100	93.617	ENSMLEG00000041184	LSG1	100	93.617	Mandrillus_leucophaeus
ENSCJAG00000013962	LSG1	99	63.636	ENSMAMG00000000470	lsg1	99	62.879	Mastacembelus_armatus
ENSCJAG00000013962	LSG1	99	64.103	ENSMZEG00005017865	lsg1	99	65.198	Maylandia_zebra
ENSCJAG00000013962	LSG1	89	65.928	ENSMGAG00000007050	LSG1	99	65.306	Meleagris_gallopavo
ENSCJAG00000013962	LSG1	91	81.095	ENSMAUG00000016976	Lsg1	93	81.924	Mesocricetus_auratus
ENSCJAG00000013962	LSG1	100	87.860	ENSMICG00000049087	LSG1	100	87.860	Microcebus_murinus
ENSCJAG00000013962	LSG1	100	81.269	ENSMOCG00000022136	Lsg1	100	80.967	Microtus_ochrogaster
ENSCJAG00000013962	LSG1	83	73.770	ENSMMOG00000008884	lsg1	99	70.570	Mola_mola
ENSCJAG00000013962	LSG1	99	59.607	ENSMODG00000019828	LSG1	99	58.744	Monodelphis_domestica
ENSCJAG00000013962	LSG1	100	82.523	MGP_CAROLIEiJ_G0020648	Lsg1	100	82.523	Mus_caroli
ENSCJAG00000013962	LSG1	100	83.131	ENSMUSG00000022538	Lsg1	100	83.131	Mus_musculus
ENSCJAG00000013962	LSG1	98	82.998	MGP_PahariEiJ_G0016352	Lsg1	100	82.853	Mus_pahari
ENSCJAG00000013962	LSG1	100	82.979	MGP_SPRETEiJ_G0021544	Lsg1	100	82.979	Mus_spretus
ENSCJAG00000013962	LSG1	99	83.891	ENSMPUG00000003734	LSG1	99	83.891	Mustela_putorius_furo
ENSCJAG00000013962	LSG1	99	85.736	ENSMLUG00000012548	LSG1	99	85.736	Myotis_lucifugus
ENSCJAG00000013962	LSG1	100	82.246	ENSNGAG00000021872	Lsg1	100	80.577	Nannospalax_galili
ENSCJAG00000013962	LSG1	100	93.465	ENSNLEG00000008293	LSG1	100	93.465	Nomascus_leucogenys
ENSCJAG00000013962	LSG1	69	69.382	ENSMEUG00000009041	-	82	69.298	Notamacropus_eugenii
ENSCJAG00000013962	LSG1	99	64.103	ENSONIG00000002635	lsg1	99	64.902	Oreochromis_niloticus
ENSCJAG00000013962	LSG1	95	72.655	ENSOANG00000012742	LSG1	99	71.224	Ornithorhynchus_anatinus
ENSCJAG00000013962	LSG1	100	86.039	ENSOCUG00000004817	LSG1	100	86.039	Oryctolagus_cuniculus
ENSCJAG00000013962	LSG1	98	63.975	ENSORLG00000007695	lsg1	99	63.927	Oryzias_latipes
ENSCJAG00000013962	LSG1	98	63.876	ENSORLG00020016286	lsg1	99	63.444	Oryzias_latipes_hni
ENSCJAG00000013962	LSG1	98	64.130	ENSORLG00015012025	lsg1	99	63.927	Oryzias_latipes_hsok
ENSCJAG00000013962	LSG1	98	62.946	ENSOMEG00000022379	lsg1	99	63.374	Oryzias_melastigma
ENSCJAG00000013962	LSG1	100	86.254	ENSOGAG00000003475	LSG1	100	86.254	Otolemur_garnettii
ENSCJAG00000013962	LSG1	99	83.915	ENSOARG00000020403	LSG1	99	83.915	Ovis_aries
ENSCJAG00000013962	LSG1	100	92.553	ENSPPAG00000029271	LSG1	100	92.553	Pan_paniscus
ENSCJAG00000013962	LSG1	99	85.113	ENSPPRG00000010281	LSG1	99	85.113	Panthera_pardus
ENSCJAG00000013962	LSG1	99	85.866	ENSPTIG00000010789	LSG1	99	85.866	Panthera_tigris_altaica
ENSCJAG00000013962	LSG1	100	92.553	ENSPTRG00000015760	LSG1	100	92.553	Pan_troglodytes
ENSCJAG00000013962	LSG1	100	93.161	ENSPANG00000018249	LSG1	100	91.641	Papio_anubis
ENSCJAG00000013962	LSG1	96	64.734	ENSPKIG00000002895	lsg1	100	63.499	Paramormyrops_kingsleyae
ENSCJAG00000013962	LSG1	96	64.551	ENSPSIG00000009821	LSG1	99	63.932	Pelodiscus_sinensis
ENSCJAG00000013962	LSG1	95	64.444	ENSPMGG00000000931	lsg1	99	63.722	Periophthalmus_magnuspinnatus
ENSCJAG00000013962	LSG1	100	82.628	ENSPEMG00000012082	-	100	82.175	Peromyscus_maniculatus_bairdii
ENSCJAG00000013962	LSG1	99	60.565	ENSPMAG00000007451	lsg1	99	60.059	Petromyzon_marinus
ENSCJAG00000013962	LSG1	99	66.667	ENSPCIG00000013890	LSG1	82	66.667	Phascolarctos_cinereus
ENSCJAG00000013962	LSG1	97	65.426	ENSPFOG00000021882	lsg1	99	65.564	Poecilia_formosa
ENSCJAG00000013962	LSG1	97	64.651	ENSPLAG00000019536	lsg1	99	65.263	Poecilia_latipinna
ENSCJAG00000013962	LSG1	97	64.606	ENSPMEG00000017281	lsg1	99	64.768	Poecilia_mexicana
ENSCJAG00000013962	LSG1	97	56.135	ENSPREG00000006048	lsg1	99	56.287	Poecilia_reticulata
ENSCJAG00000013962	LSG1	92	92.257	ENSPPYG00000014425	LSG1	100	91.433	Pongo_abelii
ENSCJAG00000013962	LSG1	90	86.667	ENSPCAG00000005511	LSG1	90	86.667	Procavia_capensis
ENSCJAG00000013962	LSG1	100	88.164	ENSPCOG00000012360	LSG1	100	88.164	Propithecus_coquereli
ENSCJAG00000013962	LSG1	99	63.868	ENSPNYG00000021994	lsg1	99	64.955	Pundamilia_nyererei
ENSCJAG00000013962	LSG1	99	64.759	ENSPNAG00000015533	lsg1	99	64.492	Pygocentrus_nattereri
ENSCJAG00000013962	LSG1	100	82.805	ENSRNOG00000001727	Lsg1	100	82.805	Rattus_norvegicus
ENSCJAG00000013962	LSG1	100	92.705	ENSRBIG00000029053	LSG1	100	92.705	Rhinopithecus_bieti
ENSCJAG00000013962	LSG1	100	92.705	ENSRROG00000037702	LSG1	100	92.705	Rhinopithecus_roxellana
ENSCJAG00000013962	LSG1	74	45.455	YGL099W	LSG1	74	45.887	Saccharomyces_cerevisiae
ENSCJAG00000013962	LSG1	100	96.960	ENSSBOG00000034938	LSG1	100	96.960	Saimiri_boliviensis_boliviensis
ENSCJAG00000013962	LSG1	78	66.920	ENSSHAG00000003487	LSG1	99	66.163	Sarcophilus_harrisii
ENSCJAG00000013962	LSG1	98	64.341	ENSSFOG00015008955	lsg1	99	63.885	Scleropages_formosus
ENSCJAG00000013962	LSG1	98	64.634	ENSSDUG00000004622	lsg1	99	64.448	Seriola_dumerili
ENSCJAG00000013962	LSG1	98	64.907	ENSSLDG00000010869	lsg1	99	64.384	Seriola_lalandi_dorsalis
ENSCJAG00000013962	LSG1	81	84.412	ENSSARG00000012981	LSG1	81	84.412	Sorex_araneus
ENSCJAG00000013962	LSG1	99	66.916	ENSSPUG00000016347	LSG1	99	66.317	Sphenodon_punctatus
ENSCJAG00000013962	LSG1	99	63.636	ENSSPAG00000005508	lsg1	99	63.086	Stegastes_partitus
ENSCJAG00000013962	LSG1	99	84.195	ENSSSCG00000011827	LSG1	99	83.587	Sus_scrofa
ENSCJAG00000013962	LSG1	89	64.202	ENSTGUG00000009068	LSG1	99	63.697	Taeniopygia_guttata
ENSCJAG00000013962	LSG1	97	61.646	ENSTRUG00000017380	lsg1	99	61.515	Takifugu_rubripes
ENSCJAG00000013962	LSG1	97	63.222	ENSTNIG00000015570	lsg1	99	64.458	Tetraodon_nigroviridis
ENSCJAG00000013962	LSG1	99	77.997	ENSTTRG00000000559	LSG1	99	77.086	Tursiops_truncatus
ENSCJAG00000013962	LSG1	99	84.043	ENSUAMG00000012454	LSG1	99	84.043	Ursus_americanus
ENSCJAG00000013962	LSG1	99	84.043	ENSUMAG00000000855	LSG1	99	84.043	Ursus_maritimus
ENSCJAG00000013962	LSG1	95	80.480	ENSVPAG00000012400	LSG1	99	80.480	Vicugna_pacos
ENSCJAG00000013962	LSG1	95	84.000	ENSVVUG00000008956	LSG1	97	84.000	Vulpes_vulpes
ENSCJAG00000013962	LSG1	99	66.767	ENSXETG00000003451	lsg1	99	66.820	Xenopus_tropicalis
ENSCJAG00000013962	LSG1	97	64.651	ENSXCOG00000003239	lsg1	99	63.910	Xiphophorus_couchianus
ENSCJAG00000013962	LSG1	97	64.861	ENSXMAG00000005536	lsg1	99	64.157	Xiphophorus_maculatus