EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000015261 (Gene tree)
Gene ID: 100409643
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 31717 bases
Position: chrNTIC01000002.1:24238408-24270124
Accession: 9348
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000028158	zf-C2H2	PF00096.26	6.2e-19	1	2
ENSCJAP00000028158	zf-C2H2	PF00096.26	6.2e-19	2	2
ENSCJAP00000066166	zf-C2H2	PF00096.26	4.2e-13	1	1
ENSCJAP00000028158	zf-met	PF12874.7	4.5e-05	1	1
ENSCJAP00000066166	zf-met	PF12874.7	0.00011	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000029757	PRDM4-201	7307	-	ENSCJAP00000028158	801 (aa)	-	U3D6J9
ENSCJAT00000075452	PRDM4-202	6992	-	ENSCJAP00000066166	696 (aa)	-	A0A2R8PL44

Gene Model

Click here to download ENSCJAG00000015261's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000015261's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000015261	PRDM4	100	98.627	ENSG00000110851	PRDM4	100	100.000	Homo_sapiens
ENSCJAG00000015261	PRDM4	99	96.746	ENSAMEG00000016174	PRDM4	99	96.746	Ailuropoda_melanoleuca
ENSCJAG00000015261	PRDM4	99	87.093	ENSAPLG00000009846	PRDM4	99	86.466	Anas_platyrhynchos
ENSCJAG00000015261	PRDM4	100	98.876	ENSANAG00000024800	PRDM4	100	98.876	Aotus_nancymaae
ENSCJAG00000015261	PRDM4	100	96.380	ENSBTAG00000012999	PRDM4	100	96.380	Bos_taurus
ENSCJAG00000015261	PRDM4	100	97.004	ENSCAFG00000001788	PRDM4	100	97.004	Canis_familiaris
ENSCJAG00000015261	PRDM4	100	97.004	ENSCAFG00020004916	PRDM4	100	97.004	Canis_lupus_dingo
ENSCJAG00000015261	PRDM4	100	96.380	ENSCHIG00000019409	PRDM4	100	96.380	Capra_hircus
ENSCJAG00000015261	PRDM4	100	97.253	ENSTSYG00000009248	PRDM4	100	97.253	Carlito_syrichta
ENSCJAG00000015261	PRDM4	99	90.864	ENSCAPG00000013937	PRDM4	99	90.738	Cavia_aperea
ENSCJAG00000015261	PRDM4	99	90.311	ENSCPOG00000022385	PRDM4	100	90.186	Cavia_porcellus
ENSCJAG00000015261	PRDM4	100	99.126	ENSCCAG00000036033	PRDM4	100	99.126	Cebus_capucinus
ENSCJAG00000015261	PRDM4	100	98.252	ENSCATG00000044797	PRDM4	100	98.252	Cercocebus_atys
ENSCJAG00000015261	PRDM4	99	92.289	ENSCLAG00000007545	PRDM4	100	92.662	Chinchilla_lanigera
ENSCJAG00000015261	PRDM4	100	98.502	ENSCSAG00000002896	PRDM4	100	98.502	Chlorocebus_sabaeus
ENSCJAG00000015261	PRDM4	72	98.182	ENSCHOG00000001744	PRDM4	86	98.182	Choloepus_hoffmanni
ENSCJAG00000015261	PRDM4	99	87.955	ENSCPBG00000023187	PRDM4	100	87.578	Chrysemys_picta_bellii
ENSCJAG00000015261	PRDM4	100	98.377	ENSCANG00000021804	PRDM4	100	98.377	Colobus_angolensis_palliatus
ENSCJAG00000015261	PRDM4	99	93.035	ENSCGRG00001015102	-	100	92.662	Cricetulus_griseus_chok1gshd
ENSCJAG00000015261	PRDM4	96	93.032	ENSCGRG00000004044	-	100	92.645	Cricetulus_griseus_crigri
ENSCJAG00000015261	PRDM4	100	96.255	ENSDNOG00000032478	PRDM4	100	100.000	Dasypus_novemcinctus
ENSCJAG00000015261	PRDM4	99	81.807	ENSDORG00000015081	-	100	90.000	Dipodomys_ordii
ENSCJAG00000015261	PRDM4	92	61.017	ENSEBUG00000003775	prdm4	98	59.677	Eptatretus_burgeri
ENSCJAG00000015261	PRDM4	100	96.754	ENSECAG00000015423	PRDM4	100	96.754	Equus_caballus
ENSCJAG00000015261	PRDM4	94	92.543	ENSEEUG00000006569	PRDM4	99	92.144	Erinaceus_europaeus
ENSCJAG00000015261	PRDM4	99	62.275	ENSELUG00000015265	prdm4	94	78.070	Esox_lucius
ENSCJAG00000015261	PRDM4	100	97.253	ENSFCAG00000022478	PRDM4	100	97.253	Felis_catus
ENSCJAG00000015261	PRDM4	99	87.327	ENSFALG00000013342	PRDM4	100	86.826	Ficedula_albicollis
ENSCJAG00000015261	PRDM4	100	86.800	ENSGALG00000012619	PRDM4	100	86.177	Gallus_gallus
ENSCJAG00000015261	PRDM4	99	87.343	ENSGAGG00000002763	PRDM4	95	86.967	Gopherus_agassizii
ENSCJAG00000015261	PRDM4	99	98.500	ENSGGOG00000001244	PRDM4	99	98.500	Gorilla_gorilla
ENSCJAG00000015261	PRDM4	99	93.225	ENSHGLG00000004590	PRDM4	98	92.974	Heterocephalus_glaber_female
ENSCJAG00000015261	PRDM4	99	92.174	ENSHGLG00100007464	PRDM4	100	91.925	Heterocephalus_glaber_male
ENSCJAG00000015261	PRDM4	94	70.833	ENSIPUG00000024162	prdm4	93	73.684	Ictalurus_punctatus
ENSCJAG00000015261	PRDM4	100	96.380	ENSSTOG00000016168	PRDM4	100	96.380	Ictidomys_tridecemlineatus
ENSCJAG00000015261	PRDM4	82	93.280	ENSJJAG00000022448	-	95	93.280	Jaculus_jaculus
ENSCJAG00000015261	PRDM4	99	72.772	ENSLACG00000007452	PRDM4	99	75.758	Latimeria_chalumnae
ENSCJAG00000015261	PRDM4	75	80.952	ENSLOCG00000017092	prdm4	100	52.814	Lepisosteus_oculatus
ENSCJAG00000015261	PRDM4	98	96.320	ENSLAFG00000001483	PRDM4	100	96.320	Loxodonta_africana
ENSCJAG00000015261	PRDM4	100	98.627	ENSMFAG00000041862	PRDM4	100	98.627	Macaca_fascicularis
ENSCJAG00000015261	PRDM4	100	98.627	ENSMMUG00000015550	PRDM4	100	98.627	Macaca_mulatta
ENSCJAG00000015261	PRDM4	100	98.377	ENSMNEG00000032319	PRDM4	100	98.377	Macaca_nemestrina
ENSCJAG00000015261	PRDM4	100	98.502	ENSMLEG00000039607	PRDM4	100	98.502	Mandrillus_leucophaeus
ENSCJAG00000015261	PRDM4	99	79.500	ENSMGAG00000012815	PRDM4	100	85.000	Meleagris_gallopavo
ENSCJAG00000015261	PRDM4	100	96.629	ENSMICG00000007807	PRDM4	100	96.629	Microcebus_murinus
ENSCJAG00000015261	PRDM4	99	93.609	ENSMOCG00000000753	Prdm4	99	93.358	Microtus_ochrogaster
ENSCJAG00000015261	PRDM4	99	93.977	ENSMUSG00000035529	Prdm4	100	93.726	Mus_musculus
ENSCJAG00000015261	PRDM4	99	93.350	MGP_PahariEiJ_G0031398	Prdm4	100	93.393	Mus_pahari
ENSCJAG00000015261	PRDM4	99	94.605	MGP_SPRETEiJ_G0016505	Prdm4	100	94.663	Mus_spretus
ENSCJAG00000015261	PRDM4	99	90.648	ENSMPUG00000012238	PRDM4	99	89.900	Mustela_putorius_furo
ENSCJAG00000015261	PRDM4	99	96.491	ENSMLUG00000000767	PRDM4	99	96.491	Myotis_lucifugus
ENSCJAG00000015261	PRDM4	99	95.358	ENSNGAG00000018627	Prdm4	100	95.358	Nannospalax_galili
ENSCJAG00000015261	PRDM4	100	98.502	ENSNLEG00000006748	PRDM4	100	98.502	Nomascus_leucogenys
ENSCJAG00000015261	PRDM4	89	88.498	ENSMEUG00000004495	PRDM4	89	88.498	Notamacropus_eugenii
ENSCJAG00000015261	PRDM4	88	94.048	ENSOPRG00000010192	PRDM4	89	94.048	Ochotona_princeps
ENSCJAG00000015261	PRDM4	99	90.375	ENSODEG00000014750	PRDM4	99	90.250	Octodon_degus
ENSCJAG00000015261	PRDM4	100	90.512	ENSOANG00000005526	PRDM4	100	90.512	Ornithorhynchus_anatinus
ENSCJAG00000015261	PRDM4	93	96.280	ENSOCUG00000012859	PRDM4	96	96.280	Oryctolagus_cuniculus
ENSCJAG00000015261	PRDM4	99	97.491	ENSOGAG00000011945	PRDM4	100	97.491	Otolemur_garnettii
ENSCJAG00000015261	PRDM4	100	96.005	ENSOARG00000017955	PRDM4	100	96.005	Ovis_aries
ENSCJAG00000015261	PRDM4	100	98.627	ENSPPAG00000038438	PRDM4	100	98.627	Pan_paniscus
ENSCJAG00000015261	PRDM4	100	97.253	ENSPPRG00000004144	PRDM4	100	97.253	Panthera_pardus
ENSCJAG00000015261	PRDM4	100	97.253	ENSPTIG00000005847	PRDM4	100	97.253	Panthera_tigris_altaica
ENSCJAG00000015261	PRDM4	100	98.627	ENSPTRG00000005400	PRDM4	100	98.627	Pan_troglodytes
ENSCJAG00000015261	PRDM4	100	98.627	ENSPANG00000022084	PRDM4	100	98.627	Papio_anubis
ENSCJAG00000015261	PRDM4	93	74.790	ENSPKIG00000000875	prdm4	92	76.068	Paramormyrops_kingsleyae
ENSCJAG00000015261	PRDM4	88	87.845	ENSPSIG00000012066	PRDM4	100	87.845	Pelodiscus_sinensis
ENSCJAG00000015261	PRDM4	99	95.232	ENSPEMG00000014598	Prdm4	100	95.232	Peromyscus_maniculatus_bairdii
ENSCJAG00000015261	PRDM4	100	88.557	ENSPCIG00000009471	PRDM4	100	88.557	Phascolarctos_cinereus
ENSCJAG00000015261	PRDM4	100	98.502	ENSPPYG00000004913	PRDM4	100	98.502	Pongo_abelii
ENSCJAG00000015261	PRDM4	83	95.833	ENSPCAG00000009987	PRDM4	83	95.833	Procavia_capensis
ENSCJAG00000015261	PRDM4	100	96.255	ENSPCOG00000021060	PRDM4	100	96.255	Propithecus_coquereli
ENSCJAG00000015261	PRDM4	100	96.259	ENSPVAG00000001596	PRDM4	100	96.259	Pteropus_vampyrus
ENSCJAG00000015261	PRDM4	99	93.609	ENSRNOG00000004962	Prdm4	100	93.358	Rattus_norvegicus
ENSCJAG00000015261	PRDM4	100	98.377	ENSRBIG00000035488	PRDM4	100	98.377	Rhinopithecus_bieti
ENSCJAG00000015261	PRDM4	100	98.502	ENSRROG00000012779	PRDM4	100	98.502	Rhinopithecus_roxellana
ENSCJAG00000015261	PRDM4	100	99.001	ENSSBOG00000000403	PRDM4	100	99.001	Saimiri_boliviensis_boliviensis
ENSCJAG00000015261	PRDM4	99	63.372	ENSSFOG00015023358	prdm4	99	69.427	Scleropages_formosus
ENSCJAG00000015261	PRDM4	100	96.504	ENSSSCG00000000160	PRDM4	100	96.504	Sus_scrofa
ENSCJAG00000015261	PRDM4	99	87.594	ENSTGUG00000010962	-	99	87.093	Taeniopygia_guttata
ENSCJAG00000015261	PRDM4	77	100.000	ENSTBEG00000001732	PRDM4	84	100.000	Tupaia_belangeri
ENSCJAG00000015261	PRDM4	100	96.130	ENSTTRG00000011056	PRDM4	100	96.130	Tursiops_truncatus
ENSCJAG00000015261	PRDM4	100	97.129	ENSUAMG00000022796	PRDM4	100	97.129	Ursus_americanus
ENSCJAG00000015261	PRDM4	100	97.129	ENSUMAG00000017231	PRDM4	100	97.129	Ursus_maritimus
ENSCJAG00000015261	PRDM4	99	96.989	ENSVPAG00000002215	PRDM4	100	96.989	Vicugna_pacos
ENSCJAG00000015261	PRDM4	100	97.004	ENSVVUG00000023397	PRDM4	100	97.004	Vulpes_vulpes