EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000015826 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 14498 bases
Position: chrNTIC01011112.1:187289844-187304341
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000029160	zf-CCCH	PF00642.24	4.5e-20	1	2
ENSCJAP00000029160	zf-CCCH	PF00642.24	4.5e-20	2	2
ENSCJAP00000056322	zf-CCCH	PF00642.24	3.4e-19	1	2
ENSCJAP00000056322	zf-CCCH	PF00642.24	3.4e-19	2	2
ENSCJAP00000055297	zf-CCCH	PF00642.24	1.9e-15	1	2
ENSCJAP00000055297	zf-CCCH	PF00642.24	1.9e-15	2	2
ENSCJAP00000055297	zf-CCHC	PF00098.23	4.3e-06	1	1
ENSCJAP00000056322	zf-CCHC	PF00098.23	5.7e-06	1	1
ENSCJAP00000029160	zf-CCHC	PF00098.23	5.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000069497	CPSF4-203	636	-	ENSCJAP00000055297	211 (aa)	-	A0A2R8P4T8
ENSCJAT00000030813	CPSF4-201	810	-	ENSCJAP00000029160	269 (aa)	-	U3BK11
ENSCJAT00000070814	CPSF4-202	798	-	ENSCJAP00000056322	265 (aa)	-	A0A2R8MYZ1

Gene Model

Click here to download ENSCJAG00000015826's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000015826's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000015826	CPSF4	58	54.839	ENSCJAG00000019911	CPSF4L	92	54.839

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000015826	CPSF4	100	100.000	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSCJAG00000015826	CPSF4	67	74.176	ENSAPOG00000004921	cpsf4	100	74.176	Acanthochromis_polyacanthus
ENSCJAG00000015826	CPSF4	100	99.257	ENSAMEG00000006252	CPSF4	100	99.257	Ailuropoda_melanoleuca
ENSCJAG00000015826	CPSF4	100	78.810	ENSACIG00000009248	cpsf4	100	77.736	Amphilophus_citrinellus
ENSCJAG00000015826	CPSF4	100	84.815	ENSAOCG00000019616	cpsf4	100	84.815	Amphiprion_ocellaris
ENSCJAG00000015826	CPSF4	100	84.815	ENSAPEG00000011679	cpsf4	100	84.815	Amphiprion_percula
ENSCJAG00000015826	CPSF4	100	84.191	ENSATEG00000007010	cpsf4	100	84.191	Anabas_testudineus
ENSCJAG00000015826	CPSF4	100	93.680	ENSACAG00000012941	CPSF4	89	93.680	Anolis_carolinensis
ENSCJAG00000015826	CPSF4	100	100.000	ENSANAG00000021360	CPSF4	100	100.000	Aotus_nancymaae
ENSCJAG00000015826	CPSF4	100	84.074	ENSACLG00000010374	cpsf4	100	84.074	Astatotilapia_calliptera
ENSCJAG00000015826	CPSF4	100	85.782	ENSAMXG00000031647	cpsf4	100	85.978	Astyanax_mexicanus
ENSCJAG00000015826	CPSF4	100	89.591	ENSBTAG00000002090	CPSF4	100	89.591	Bos_taurus
ENSCJAG00000015826	CPSF4	100	98.885	ENSCAFG00000015036	CPSF4	100	98.885	Canis_familiaris
ENSCJAG00000015826	CPSF4	100	92.565	ENSCAFG00020014462	CPSF4	100	92.565	Canis_lupus_dingo
ENSCJAG00000015826	CPSF4	100	99.257	ENSCHIG00000014313	CPSF4	100	99.257	Capra_hircus
ENSCJAG00000015826	CPSF4	100	88.263	ENSTSYG00000014604	-	100	88.263	Carlito_syrichta
ENSCJAG00000015826	CPSF4	85	89.503	ENSTSYG00000008195	-	100	89.503	Carlito_syrichta
ENSCJAG00000015826	CPSF4	100	99.052	ENSTSYG00000005712	-	100	99.052	Carlito_syrichta
ENSCJAG00000015826	CPSF4	81	99.083	ENSCAPG00000013881	CPSF4	87	99.083	Cavia_aperea
ENSCJAG00000015826	CPSF4	100	99.052	ENSCPOG00000001783	CPSF4	100	99.052	Cavia_porcellus
ENSCJAG00000015826	CPSF4	100	100.000	ENSCCAG00000028291	CPSF4	100	100.000	Cebus_capucinus
ENSCJAG00000015826	CPSF4	100	100.000	ENSCATG00000038440	CPSF4	100	100.000	Cercocebus_atys
ENSCJAG00000015826	CPSF4	100	99.257	ENSCLAG00000007050	CPSF4	100	99.257	Chinchilla_lanigera
ENSCJAG00000015826	CPSF4	100	100.000	ENSCSAG00000017795	CPSF4	100	100.000	Chlorocebus_sabaeus
ENSCJAG00000015826	CPSF4	63	80.723	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSCJAG00000015826	CPSF4	80	95.833	ENSCPBG00000020869	CPSF4	100	95.833	Chrysemys_picta_bellii
ENSCJAG00000015826	CPSF4	97	55.939	ENSCING00000021080	-	97	55.939	Ciona_intestinalis
ENSCJAG00000015826	CPSF4	96	53.546	ENSCSAVG00000011469	-	97	53.546	Ciona_savignyi
ENSCJAG00000015826	CPSF4	100	100.000	ENSCANG00000019384	CPSF4	100	100.000	Colobus_angolensis_palliatus
ENSCJAG00000015826	CPSF4	100	99.052	ENSCGRG00001024184	Cpsf4	100	99.052	Cricetulus_griseus_chok1gshd
ENSCJAG00000015826	CPSF4	100	99.257	ENSCGRG00000013892	Cpsf4	100	99.257	Cricetulus_griseus_crigri
ENSCJAG00000015826	CPSF4	100	84.360	ENSCSEG00000019055	cpsf4	100	84.360	Cynoglossus_semilaevis
ENSCJAG00000015826	CPSF4	100	83.333	ENSCVAG00000016528	cpsf4	100	83.333	Cyprinodon_variegatus
ENSCJAG00000015826	CPSF4	100	85.240	ENSDARG00000020217	cpsf4	100	85.240	Danio_rerio
ENSCJAG00000015826	CPSF4	100	99.628	ENSDNOG00000006344	CPSF4	100	99.628	Dasypus_novemcinctus
ENSCJAG00000015826	CPSF4	81	98.618	ENSDORG00000000742	Cpsf4	100	98.618	Dipodomys_ordii
ENSCJAG00000015826	CPSF4	100	54.110	FBgn0015621	Clp	99	54.209	Drosophila_melanogaster
ENSCJAG00000015826	CPSF4	73	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSCJAG00000015826	CPSF4	99	65.399	ENSEBUG00000012552	cpsf4	98	65.399	Eptatretus_burgeri
ENSCJAG00000015826	CPSF4	100	89.963	ENSEASG00005002487	CPSF4	100	89.963	Equus_asinus_asinus
ENSCJAG00000015826	CPSF4	100	99.257	ENSECAG00000007525	CPSF4	100	99.257	Equus_caballus
ENSCJAG00000015826	CPSF4	68	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSCJAG00000015826	CPSF4	100	82.847	ENSELUG00000011481	cpsf4	100	82.847	Esox_lucius
ENSCJAG00000015826	CPSF4	100	99.257	ENSFCAG00000015070	CPSF4	100	99.257	Felis_catus
ENSCJAG00000015826	CPSF4	62	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSCJAG00000015826	CPSF4	100	86.245	ENSFALG00000013799	CPSF4	100	86.245	Ficedula_albicollis
ENSCJAG00000015826	CPSF4	90	98.354	ENSFDAG00000014092	CPSF4	100	98.354	Fukomys_damarensis
ENSCJAG00000015826	CPSF4	100	82.963	ENSFHEG00000010880	cpsf4	100	82.963	Fundulus_heteroclitus
ENSCJAG00000015826	CPSF4	100	77.491	ENSGMOG00000002330	cpsf4	100	76.404	Gadus_morhua
ENSCJAG00000015826	CPSF4	99	38.947	ENSGALG00000004441	-	98	32.174	Gallus_gallus
ENSCJAG00000015826	CPSF4	100	86.245	ENSGALG00000004714	CPSF4	100	85.130	Gallus_gallus
ENSCJAG00000015826	CPSF4	100	82.222	ENSGAFG00000010580	cpsf4	100	82.222	Gambusia_affinis
ENSCJAG00000015826	CPSF4	100	77.122	ENSGACG00000007792	cpsf4	100	76.404	Gasterosteus_aculeatus
ENSCJAG00000015826	CPSF4	100	95.911	ENSGAGG00000021835	CPSF4	100	95.911	Gopherus_agassizii
ENSCJAG00000015826	CPSF4	68	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSCJAG00000015826	CPSF4	100	100.000	ENSGGOG00000015131	CPSF4	100	100.000	Gorilla_gorilla
ENSCJAG00000015826	CPSF4	100	84.074	ENSHBUG00000013699	cpsf4	100	84.074	Haplochromis_burtoni
ENSCJAG00000015826	CPSF4	100	98.578	ENSHGLG00000017150	CPSF4	100	98.578	Heterocephalus_glaber_female
ENSCJAG00000015826	CPSF4	87	95.339	ENSHGLG00100009215	-	100	96.023	Heterocephalus_glaber_male
ENSCJAG00000015826	CPSF4	100	70.616	ENSHGLG00100017302	-	100	68.720	Heterocephalus_glaber_male
ENSCJAG00000015826	CPSF4	100	80.741	ENSHCOG00000004397	cpsf4	100	80.741	Hippocampus_comes
ENSCJAG00000015826	CPSF4	100	84.133	ENSIPUG00000017147	cpsf4	100	85.294	Ictalurus_punctatus
ENSCJAG00000015826	CPSF4	100	99.257	ENSSTOG00000001688	CPSF4	100	99.257	Ictidomys_tridecemlineatus
ENSCJAG00000015826	CPSF4	100	99.257	ENSJJAG00000019426	Cpsf4	100	99.257	Jaculus_jaculus
ENSCJAG00000015826	CPSF4	100	81.852	ENSKMAG00000015642	cpsf4	100	81.852	Kryptolebias_marmoratus
ENSCJAG00000015826	CPSF4	100	89.259	ENSLACG00000010938	CPSF4	100	89.259	Latimeria_chalumnae
ENSCJAG00000015826	CPSF4	100	61.654	ENSLACG00000018470	-	100	61.654	Latimeria_chalumnae
ENSCJAG00000015826	CPSF4	100	89.219	ENSLOCG00000004814	cpsf4	100	89.219	Lepisosteus_oculatus
ENSCJAG00000015826	CPSF4	100	98.885	ENSLAFG00000000159	CPSF4	100	98.885	Loxodonta_africana
ENSCJAG00000015826	CPSF4	100	100.000	ENSMFAG00000001462	CPSF4	100	100.000	Macaca_fascicularis
ENSCJAG00000015826	CPSF4	100	100.000	ENSMMUG00000019191	CPSF4	100	100.000	Macaca_mulatta
ENSCJAG00000015826	CPSF4	100	100.000	ENSMNEG00000032306	CPSF4	100	100.000	Macaca_nemestrina
ENSCJAG00000015826	CPSF4	100	100.000	ENSMLEG00000034721	CPSF4	100	100.000	Mandrillus_leucophaeus
ENSCJAG00000015826	CPSF4	100	84.074	ENSMAMG00000006244	cpsf4	100	84.074	Mastacembelus_armatus
ENSCJAG00000015826	CPSF4	100	84.074	ENSMZEG00005007515	cpsf4	100	84.074	Maylandia_zebra
ENSCJAG00000015826	CPSF4	87	84.681	ENSMGAG00000004235	CPSF4	100	83.404	Meleagris_gallopavo
ENSCJAG00000015826	CPSF4	100	99.257	ENSMAUG00000021253	Cpsf4	100	99.257	Mesocricetus_auratus
ENSCJAG00000015826	CPSF4	100	99.628	ENSMICG00000017429	CPSF4	100	99.628	Microcebus_murinus
ENSCJAG00000015826	CPSF4	100	99.257	ENSMOCG00000014901	Cpsf4	100	99.257	Microtus_ochrogaster
ENSCJAG00000015826	CPSF4	100	85.308	ENSMMOG00000001813	cpsf4	100	85.308	Mola_mola
ENSCJAG00000015826	CPSF4	100	97.770	ENSMODG00000001367	CPSF4	100	97.770	Monodelphis_domestica
ENSCJAG00000015826	CPSF4	100	82.963	ENSMALG00000012611	cpsf4	100	82.963	Monopterus_albus
ENSCJAG00000015826	CPSF4	100	99.257	MGP_CAROLIEiJ_G0028012	Cpsf4	100	99.257	Mus_caroli
ENSCJAG00000015826	CPSF4	100	99.257	ENSMUSG00000029625	Cpsf4	100	99.257	Mus_musculus
ENSCJAG00000015826	CPSF4	100	99.257	MGP_PahariEiJ_G0024581	Cpsf4	100	99.257	Mus_pahari
ENSCJAG00000015826	CPSF4	100	99.628	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.628	Mus_spretus
ENSCJAG00000015826	CPSF4	100	99.257	ENSMPUG00000016508	CPSF4	100	99.257	Mustela_putorius_furo
ENSCJAG00000015826	CPSF4	87	87.660	ENSMLUG00000010980	CPSF4	100	87.660	Myotis_lucifugus
ENSCJAG00000015826	CPSF4	100	98.885	ENSNGAG00000001567	Cpsf4	100	98.885	Nannospalax_galili
ENSCJAG00000015826	CPSF4	91	83.740	ENSNBRG00000003943	cpsf4	98	83.740	Neolamprologus_brichardi
ENSCJAG00000015826	CPSF4	100	100.000	ENSNLEG00000011074	CPSF4	100	100.000	Nomascus_leucogenys
ENSCJAG00000015826	CPSF4	100	97.770	ENSMEUG00000006955	CPSF4	100	97.770	Notamacropus_eugenii
ENSCJAG00000015826	CPSF4	100	98.885	ENSOPRG00000013663	CPSF4	100	98.885	Ochotona_princeps
ENSCJAG00000015826	CPSF4	100	74.359	ENSODEG00000009779	-	100	74.359	Octodon_degus
ENSCJAG00000015826	CPSF4	100	99.257	ENSODEG00000011181	-	100	99.257	Octodon_degus
ENSCJAG00000015826	CPSF4	98	78.774	ENSODEG00000018283	-	89	78.774	Octodon_degus
ENSCJAG00000015826	CPSF4	100	84.074	ENSONIG00000008495	cpsf4	100	84.074	Oreochromis_niloticus
ENSCJAG00000015826	CPSF4	100	53.957	ENSOANG00000009568	-	100	52.518	Ornithorhynchus_anatinus
ENSCJAG00000015826	CPSF4	87	96.170	ENSOANG00000007729	CPSF4	100	96.170	Ornithorhynchus_anatinus
ENSCJAG00000015826	CPSF4	100	98.885	ENSOCUG00000002437	CPSF4	70	98.885	Oryctolagus_cuniculus
ENSCJAG00000015826	CPSF4	100	83.271	ENSORLG00000022798	cpsf4	100	83.271	Oryzias_latipes
ENSCJAG00000015826	CPSF4	100	83.271	ENSORLG00020008548	cpsf4	100	83.271	Oryzias_latipes_hni
ENSCJAG00000015826	CPSF4	100	82.900	ENSORLG00015019575	cpsf4	100	82.900	Oryzias_latipes_hsok
ENSCJAG00000015826	CPSF4	100	83.886	ENSOMEG00000005176	cpsf4	100	83.886	Oryzias_melastigma
ENSCJAG00000015826	CPSF4	100	99.628	ENSOGAG00000010884	CPSF4	100	99.628	Otolemur_garnettii
ENSCJAG00000015826	CPSF4	100	88.278	ENSOARG00000018668	CPSF4	100	87.912	Ovis_aries
ENSCJAG00000015826	CPSF4	100	99.628	ENSPPAG00000043355	CPSF4	100	99.628	Pan_paniscus
ENSCJAG00000015826	CPSF4	100	99.257	ENSPPRG00000003134	CPSF4	100	99.257	Panthera_pardus
ENSCJAG00000015826	CPSF4	90	99.174	ENSPTIG00000005604	CPSF4	90	99.174	Panthera_tigris_altaica
ENSCJAG00000015826	CPSF4	100	99.628	ENSPTRG00000019453	CPSF4	100	99.628	Pan_troglodytes
ENSCJAG00000015826	CPSF4	100	100.000	ENSPANG00000023123	CPSF4	100	100.000	Papio_anubis
ENSCJAG00000015826	CPSF4	100	84.307	ENSPKIG00000014278	cpsf4	100	84.307	Paramormyrops_kingsleyae
ENSCJAG00000015826	CPSF4	80	95.370	ENSPSIG00000011229	CPSF4	100	95.370	Pelodiscus_sinensis
ENSCJAG00000015826	CPSF4	81	58.904	ENSPSIG00000018198	-	100	57.944	Pelodiscus_sinensis
ENSCJAG00000015826	CPSF4	100	72.862	ENSPMGG00000017735	cpsf4	100	71.747	Periophthalmus_magnuspinnatus
ENSCJAG00000015826	CPSF4	100	99.257	ENSPEMG00000004508	Cpsf4	100	99.257	Peromyscus_maniculatus_bairdii
ENSCJAG00000015826	CPSF4	100	97.770	ENSPCIG00000024776	CPSF4	100	97.770	Phascolarctos_cinereus
ENSCJAG00000015826	CPSF4	100	82.222	ENSPFOG00000014912	cpsf4	100	82.222	Poecilia_formosa
ENSCJAG00000015826	CPSF4	100	75.940	ENSPLAG00000009599	cpsf4	100	75.940	Poecilia_latipinna
ENSCJAG00000015826	CPSF4	100	82.222	ENSPMEG00000009790	cpsf4	100	82.222	Poecilia_mexicana
ENSCJAG00000015826	CPSF4	100	81.481	ENSPREG00000018166	cpsf4	100	79.182	Poecilia_reticulata
ENSCJAG00000015826	CPSF4	87	99.145	ENSPPYG00000017378	CPSF4	100	99.145	Pongo_abelii
ENSCJAG00000015826	CPSF4	100	98.141	ENSPCAG00000001892	CPSF4	100	98.141	Procavia_capensis
ENSCJAG00000015826	CPSF4	100	99.257	ENSPCOG00000012771	CPSF4	100	99.257	Propithecus_coquereli
ENSCJAG00000015826	CPSF4	100	92.565	ENSPVAG00000007531	CPSF4	100	92.565	Pteropus_vampyrus
ENSCJAG00000015826	CPSF4	100	84.074	ENSPNYG00000018559	cpsf4	100	84.074	Pundamilia_nyererei
ENSCJAG00000015826	CPSF4	100	86.347	ENSPNAG00000003736	cpsf4	100	87.085	Pygocentrus_nattereri
ENSCJAG00000015826	CPSF4	100	99.052	ENSRNOG00000000985	Cpsf4	100	99.052	Rattus_norvegicus
ENSCJAG00000015826	CPSF4	87	100.000	ENSRBIG00000033886	CPSF4	100	100.000	Rhinopithecus_bieti
ENSCJAG00000015826	CPSF4	100	100.000	ENSRROG00000040431	CPSF4	100	100.000	Rhinopithecus_roxellana
ENSCJAG00000015826	CPSF4	100	100.000	ENSSBOG00000020493	CPSF4	100	100.000	Saimiri_boliviensis_boliviensis
ENSCJAG00000015826	CPSF4	100	97.770	ENSSHAG00000011533	CPSF4	100	97.770	Sarcophilus_harrisii
ENSCJAG00000015826	CPSF4	100	85.507	ENSSFOG00015007883	cpsf4	100	86.232	Scleropages_formosus
ENSCJAG00000015826	CPSF4	100	79.554	ENSSMAG00000006374	cpsf4	100	77.736	Scophthalmus_maximus
ENSCJAG00000015826	CPSF4	100	83.333	ENSSDUG00000018887	cpsf4	100	83.333	Seriola_dumerili
ENSCJAG00000015826	CPSF4	100	84.074	ENSSLDG00000019078	cpsf4	100	84.074	Seriola_lalandi_dorsalis
ENSCJAG00000015826	CPSF4	87	99.573	ENSSARG00000012416	CPSF4	100	99.573	Sorex_araneus
ENSCJAG00000015826	CPSF4	96	60.156	ENSSPUG00000014803	-	97	60.156	Sphenodon_punctatus
ENSCJAG00000015826	CPSF4	100	94.424	ENSSPUG00000003549	CPSF4	100	94.424	Sphenodon_punctatus
ENSCJAG00000015826	CPSF4	100	79.182	ENSSPAG00000006174	cpsf4	100	76.981	Stegastes_partitus
ENSCJAG00000015826	CPSF4	100	90.335	ENSSSCG00000026896	CPSF4	100	90.335	Sus_scrofa
ENSCJAG00000015826	CPSF4	100	85.240	ENSTGUG00000007552	CPSF4	100	83.764	Taeniopygia_guttata
ENSCJAG00000015826	CPSF4	100	81.111	ENSTRUG00000024220	cpsf4	100	81.111	Takifugu_rubripes
ENSCJAG00000015826	CPSF4	100	80.000	ENSTNIG00000006265	cpsf4	100	81.481	Tetraodon_nigroviridis
ENSCJAG00000015826	CPSF4	87	90.171	ENSTBEG00000011406	CPSF4	100	90.171	Tupaia_belangeri
ENSCJAG00000015826	CPSF4	100	78.810	ENSTTRG00000003007	CPSF4	100	78.810	Tursiops_truncatus
ENSCJAG00000015826	CPSF4	92	88.664	ENSUAMG00000008051	CPSF4	85	88.664	Ursus_americanus
ENSCJAG00000015826	CPSF4	100	89.591	ENSUMAG00000009474	CPSF4	100	89.591	Ursus_maritimus
ENSCJAG00000015826	CPSF4	100	89.591	ENSVVUG00000008824	CPSF4	100	89.591	Vulpes_vulpes
ENSCJAG00000015826	CPSF4	99	60.821	ENSXETG00000004641	cpsf4l	99	60.821	Xenopus_tropicalis
ENSCJAG00000015826	CPSF4	100	88.172	ENSXETG00000009892	cpsf4	100	88.172	Xenopus_tropicalis
ENSCJAG00000015826	CPSF4	100	83.886	ENSXCOG00000016040	cpsf4	100	83.886	Xiphophorus_couchianus
ENSCJAG00000015826	CPSF4	100	82.222	ENSXMAG00000024670	cpsf4	100	82.222	Xiphophorus_maculatus