EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000015866 (Gene tree)
Gene ID: 100394289
Gene Symbol: PARN
Alias: DAN
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 199575 bases
Position: chrNTIC01004446.1:7352224-7551798
Accession: 100394289
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000046788	RNA_bind	PF08675.11	1.1e-33	1	1
ENSCJAP00000029307	RNA_bind	PF08675.11	1.5e-33	1	1
ENSCJAP00000029303	RNA_bind	PF08675.11	1.5e-33	1	1
ENSCJAP00000066547	RNA_bind	PF08675.11	1.6e-33	1	1
ENSCJAP00000029271	RNA_bind	PF08675.11	9.8e-32	1	1
ENSCJAP00000066547	CAF1	PF04857.20	2.5e-89	1	1
ENSCJAP00000029271	CAF1	PF04857.20	4.2e-78	1	1
ENSCJAP00000029303	CAF1	PF04857.20	4.9e-78	1	1
ENSCJAP00000029307	CAF1	PF04857.20	3e-68	1	2
ENSCJAP00000029307	CAF1	PF04857.20	3e-68	2	2
ENSCJAP00000046788	CAF1	PF04857.20	1.6e-52	1	2
ENSCJAP00000046788	CAF1	PF04857.20	1.6e-52	2	2
ENSCJAP00000061116	CAF1	PF04857.20	8e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000078885	PARN-206	198	-	ENSCJAP00000061116	65 (aa)	-	A0A2R8MKB5
ENSCJAT00000053615	PARN-205	1395	-	ENSCJAP00000046788	464 (aa)	-	F7I1A4
ENSCJAT00000030932	PARN-204	1761	-	ENSCJAP00000029271	586 (aa)	-	F7IPB1
ENSCJAT00000067804	PARN-201	3344	XM_002755909	ENSCJAP00000066547	639 (aa)	XP_002755955	U3D8R3
ENSCJAT00000030967	PARN-202	1857	-	ENSCJAP00000029303	618 (aa)	-	F7IH98
ENSCJAT00000030971	PARN-203	1782	-	ENSCJAP00000029307	593 (aa)	-	F7IH95

Gene Model

Click here to download ENSCJAG00000015866's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000015866's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000015866	PARN	100	100.000	ENSG00000140694	PARN	100	100.000	Homo_sapiens
ENSCJAG00000015866	PARN	92	80.000	ENSAPOG00000019730	-	100	69.683	Acanthochromis_polyacanthus
ENSCJAG00000015866	PARN	100	96.610	ENSAMEG00000011208	PARN	100	92.031	Ailuropoda_melanoleuca
ENSCJAG00000015866	PARN	92	78.333	ENSACIG00000000619	parn	83	76.679	Amphilophus_citrinellus
ENSCJAG00000015866	PARN	94	77.966	ENSAOCG00000003465	parn	84	73.604	Amphiprion_ocellaris
ENSCJAG00000015866	PARN	74	77.987	ENSAPEG00000010661	parn	91	77.987	Amphiprion_percula
ENSCJAG00000015866	PARN	91	76.271	ENSATEG00000004661	parn	83	74.829	Anabas_testudineus
ENSCJAG00000015866	PARN	99	87.037	ENSAPLG00000013914	PARN	99	84.700	Anas_platyrhynchos
ENSCJAG00000015866	PARN	100	89.831	ENSACAG00000004973	PARN	100	80.615	Anolis_carolinensis
ENSCJAG00000015866	PARN	100	100.000	ENSANAG00000031516	PARN	100	100.000	Aotus_nancymaae
ENSCJAG00000015866	PARN	94	77.966	ENSACLG00000004742	parn	85	74.199	Astatotilapia_calliptera
ENSCJAG00000015866	PARN	91	79.661	ENSAMXG00000012390	parn	92	72.870	Astyanax_mexicanus
ENSCJAG00000015866	PARN	100	98.305	ENSBTAG00000018097	PARN	100	92.734	Bos_taurus
ENSCJAG00000015866	PARN	100	94.915	ENSCAFG00000018795	PARN	100	92.175	Canis_familiaris
ENSCJAG00000015866	PARN	100	96.610	ENSCAFG00020024126	PARN	100	92.175	Canis_lupus_dingo
ENSCJAG00000015866	PARN	100	98.305	ENSCHIG00000018143	PARN	100	93.271	Capra_hircus
ENSCJAG00000015866	PARN	60	77.500	ENSCAPG00000007984	PARN	78	63.410	Cavia_aperea
ENSCJAG00000015866	PARN	100	98.305	ENSCPOG00000002263	PARN	100	90.610	Cavia_porcellus
ENSCJAG00000015866	PARN	100	100.000	ENSCCAG00000030367	PARN	100	100.000	Cebus_capucinus
ENSCJAG00000015866	PARN	91	100.000	ENSCATG00000041368	PARN	100	100.000	Cercocebus_atys
ENSCJAG00000015866	PARN	100	96.610	ENSCLAG00000015406	PARN	99	90.454	Chinchilla_lanigera
ENSCJAG00000015866	PARN	100	100.000	ENSCSAG00000008142	PARN	100	98.122	Chlorocebus_sabaeus
ENSCJAG00000015866	PARN	98	98.077	ENSCHOG00000007014	PARN	100	76.266	Choloepus_hoffmanni
ENSCJAG00000015866	PARN	89	84.340	ENSCPBG00000006609	PARN	97	85.130	Chrysemys_picta_bellii
ENSCJAG00000015866	PARN	88	47.368	ENSCING00000010142	-	99	44.090	Ciona_intestinalis
ENSCJAG00000015866	PARN	91	100.000	ENSCANG00000023734	-	100	85.909	Colobus_angolensis_palliatus
ENSCJAG00000015866	PARN	100	100.000	ENSCANG00000028849	-	100	100.000	Colobus_angolensis_palliatus
ENSCJAG00000015866	PARN	100	96.610	ENSCGRG00001012096	Parn	100	85.202	Cricetulus_griseus_chok1gshd
ENSCJAG00000015866	PARN	100	96.610	ENSCGRG00000004939	Parn	100	85.202	Cricetulus_griseus_crigri
ENSCJAG00000015866	PARN	94	79.661	ENSCSEG00000002064	parn	100	65.158	Cynoglossus_semilaevis
ENSCJAG00000015866	PARN	91	77.966	ENSCVAG00000014848	parn	83	73.801	Cyprinodon_variegatus
ENSCJAG00000015866	PARN	100	71.186	ENSDARG00000102634	parn	100	64.438	Danio_rerio
ENSCJAG00000015866	PARN	100	98.305	ENSDNOG00000000833	PARN	100	92.801	Dasypus_novemcinctus
ENSCJAG00000015866	PARN	91	96.610	ENSDORG00000027812	-	100	87.727	Dipodomys_ordii
ENSCJAG00000015866	PARN	92	95.000	ENSETEG00000014828	-	78	94.297	Echinops_telfairi
ENSCJAG00000015866	PARN	56	30.086	ENSEBUG00000008118	PNLDC1	61	30.086	Eptatretus_burgeri
ENSCJAG00000015866	PARN	76	52.661	ENSEBUG00000007052	PARN	70	71.429	Eptatretus_burgeri
ENSCJAG00000015866	PARN	100	98.305	ENSEASG00005011400	PARN	100	92.958	Equus_asinus_asinus
ENSCJAG00000015866	PARN	100	96.610	ENSECAG00000017792	PARN	100	92.801	Equus_caballus
ENSCJAG00000015866	PARN	92	96.667	ENSEEUG00000010370	PARN	86	83.258	Erinaceus_europaeus
ENSCJAG00000015866	PARN	91	79.661	ENSELUG00000013139	parn	77	72.804	Esox_lucius
ENSCJAG00000015866	PARN	100	96.610	ENSFCAG00000044961	PARN	100	96.610	Felis_catus
ENSCJAG00000015866	PARN	58	30.319	ENSFALG00000012081	PNLDC1	70	30.319	Ficedula_albicollis
ENSCJAG00000015866	PARN	98	88.462	ENSFALG00000003911	PARN	98	83.386	Ficedula_albicollis
ENSCJAG00000015866	PARN	100	98.305	ENSFDAG00000009234	PARN	100	89.828	Fukomys_damarensis
ENSCJAG00000015866	PARN	98	71.875	ENSFHEG00000013738	parn	100	71.875	Fundulus_heteroclitus
ENSCJAG00000015866	PARN	91	77.966	ENSGMOG00000003231	parn	97	77.052	Gadus_morhua
ENSCJAG00000015866	PARN	100	91.525	ENSGALG00000003091	PARN	100	82.582	Gallus_gallus
ENSCJAG00000015866	PARN	91	79.661	ENSGAFG00000011061	parn	84	73.154	Gambusia_affinis
ENSCJAG00000015866	PARN	91	74.576	ENSGACG00000019501	parn	100	69.183	Gasterosteus_aculeatus
ENSCJAG00000015866	PARN	70	78.834	ENSGAGG00000023281	PARN	83	78.834	Gopherus_agassizii
ENSCJAG00000015866	PARN	100	100.000	ENSGGOG00000025224	PARN	100	100.000	Gorilla_gorilla
ENSCJAG00000015866	PARN	94	77.966	ENSHBUG00000017906	parn	90	77.654	Haplochromis_burtoni
ENSCJAG00000015866	PARN	100	98.305	ENSHGLG00000010886	PARN	100	90.297	Heterocephalus_glaber_female
ENSCJAG00000015866	PARN	100	98.305	ENSHGLG00100014659	PARN	100	90.297	Heterocephalus_glaber_male
ENSCJAG00000015866	PARN	80	84.615	ENSHCOG00000008683	parn	91	73.913	Hippocampus_comes
ENSCJAG00000015866	PARN	91	69.492	ENSIPUG00000012401	parn	84	62.823	Ictalurus_punctatus
ENSCJAG00000015866	PARN	100	96.610	ENSSTOG00000007519	PARN	100	90.923	Ictidomys_tridecemlineatus
ENSCJAG00000015866	PARN	100	98.305	ENSJJAG00000023049	Parn	100	87.793	Jaculus_jaculus
ENSCJAG00000015866	PARN	94	76.271	ENSKMAG00000009462	parn	84	73.891	Kryptolebias_marmoratus
ENSCJAG00000015866	PARN	91	77.966	ENSLBEG00000009167	parn	90	72.835	Labrus_bergylta
ENSCJAG00000015866	PARN	79	79.167	ENSLACG00000004207	PARN	100	77.830	Latimeria_chalumnae
ENSCJAG00000015866	PARN	96	81.356	ENSLOCG00000000715	parn	87	74.257	Lepisosteus_oculatus
ENSCJAG00000015866	PARN	100	98.305	ENSLAFG00000015036	PARN	100	92.645	Loxodonta_africana
ENSCJAG00000015866	PARN	100	100.000	ENSMFAG00000044852	PARN	100	100.000	Macaca_fascicularis
ENSCJAG00000015866	PARN	100	100.000	ENSMMUG00000018849	PARN	100	100.000	Macaca_mulatta
ENSCJAG00000015866	PARN	100	100.000	ENSMNEG00000045108	PARN	100	100.000	Macaca_nemestrina
ENSCJAG00000015866	PARN	100	100.000	ENSMLEG00000031743	PARN	100	100.000	Mandrillus_leucophaeus
ENSCJAG00000015866	PARN	91	77.966	ENSMAMG00000006939	parn	84	72.697	Mastacembelus_armatus
ENSCJAG00000015866	PARN	94	77.966	ENSMZEG00005013590	parn	90	77.425	Maylandia_zebra
ENSCJAG00000015866	PARN	94	100.000	ENSMGAG00000001004	PARN	95	82.708	Meleagris_gallopavo
ENSCJAG00000015866	PARN	95	94.286	ENSMAUG00000008025	Parn	100	79.692	Mesocricetus_auratus
ENSCJAG00000015866	PARN	100	98.462	ENSMICG00000016053	PARN	100	98.462	Microcebus_murinus
ENSCJAG00000015866	PARN	91	94.915	ENSMOCG00000022211	Parn	100	91.296	Microtus_ochrogaster
ENSCJAG00000015866	PARN	91	79.661	ENSMMOG00000011333	parn	87	77.009	Mola_mola
ENSCJAG00000015866	PARN	92	90.000	ENSMODG00000004915	PARN	99	93.952	Monodelphis_domestica
ENSCJAG00000015866	PARN	91	76.667	ENSMALG00000019426	parn	91	79.143	Monopterus_albus
ENSCJAG00000015866	PARN	100	94.915	MGP_CAROLIEiJ_G0020466	Parn	100	85.915	Mus_caroli
ENSCJAG00000015866	PARN	100	93.220	ENSMUSG00000022685	Parn	100	92.683	Mus_musculus
ENSCJAG00000015866	PARN	100	96.610	MGP_PahariEiJ_G0016172	Parn	100	85.603	Mus_pahari
ENSCJAG00000015866	PARN	100	94.915	MGP_SPRETEiJ_G0021361	Parn	100	85.915	Mus_spretus
ENSCJAG00000015866	PARN	100	98.305	ENSMPUG00000014464	PARN	100	92.645	Mustela_putorius_furo
ENSCJAG00000015866	PARN	91	94.915	ENSMLUG00000005414	PARN	100	94.332	Myotis_lucifugus
ENSCJAG00000015866	PARN	91	98.305	ENSNGAG00000024082	-	100	87.273	Nannospalax_galili
ENSCJAG00000015866	PARN	91	77.966	ENSNBRG00000006805	parn	90	77.154	Neolamprologus_brichardi
ENSCJAG00000015866	PARN	100	100.000	ENSNLEG00000010241	PARN	100	100.000	Nomascus_leucogenys
ENSCJAG00000015866	PARN	93	92.308	ENSMEUG00000008178	-	100	60.443	Notamacropus_eugenii
ENSCJAG00000015866	PARN	98	98.077	ENSOPRG00000012187	PARN	100	85.918	Ochotona_princeps
ENSCJAG00000015866	PARN	100	98.305	ENSODEG00000001617	PARN	100	81.931	Octodon_degus
ENSCJAG00000015866	PARN	100	77.966	ENSONIG00000000151	parn	100	70.000	Oreochromis_niloticus
ENSCJAG00000015866	PARN	82	81.890	ENSOANG00000020155	-	97	82.415	Ornithorhynchus_anatinus
ENSCJAG00000015866	PARN	99	91.071	ENSOCUG00000000322	PARN	100	91.038	Oryctolagus_cuniculus
ENSCJAG00000015866	PARN	100	76.923	ENSORLG00000024893	-	100	68.326	Oryzias_latipes
ENSCJAG00000015866	PARN	91	79.661	ENSORLG00020010313	parn	86	72.881	Oryzias_latipes_hni
ENSCJAG00000015866	PARN	91	79.661	ENSORLG00015000300	parn	86	72.712	Oryzias_latipes_hsok
ENSCJAG00000015866	PARN	91	79.661	ENSOMEG00000019555	parn	97	67.873	Oryzias_melastigma
ENSCJAG00000015866	PARN	92	98.333	ENSOGAG00000014626	PARN	100	93.939	Otolemur_garnettii
ENSCJAG00000015866	PARN	91	98.305	ENSOARG00000007574	PARN	100	97.368	Ovis_aries
ENSCJAG00000015866	PARN	100	100.000	ENSPPAG00000031438	PARN	100	100.000	Pan_paniscus
ENSCJAG00000015866	PARN	100	96.610	ENSPPRG00000018583	PARN	100	96.610	Panthera_pardus
ENSCJAG00000015866	PARN	100	96.610	ENSPTIG00000012135	PARN	100	96.610	Panthera_tigris_altaica
ENSCJAG00000015866	PARN	100	100.000	ENSPTRG00000007792	PARN	100	100.000	Pan_troglodytes
ENSCJAG00000015866	PARN	100	100.000	ENSPANG00000020099	PARN	100	100.000	Papio_anubis
ENSCJAG00000015866	PARN	96	79.661	ENSPKIG00000022807	parn	91	70.238	Paramormyrops_kingsleyae
ENSCJAG00000015866	PARN	98	89.831	ENSPSIG00000014804	PARN	100	82.872	Pelodiscus_sinensis
ENSCJAG00000015866	PARN	91	76.271	ENSPMGG00000014431	parn	75	75.046	Periophthalmus_magnuspinnatus
ENSCJAG00000015866	PARN	100	94.915	ENSPEMG00000018439	Parn	100	83.255	Peromyscus_maniculatus_bairdii
ENSCJAG00000015866	PARN	81	67.885	ENSPMAG00000003956	parn	99	67.885	Petromyzon_marinus
ENSCJAG00000015866	PARN	100	92.308	ENSPCIG00000001259	PARN	100	92.308	Phascolarctos_cinereus
ENSCJAG00000015866	PARN	91	79.661	ENSPFOG00000012823	parn	84	72.727	Poecilia_formosa
ENSCJAG00000015866	PARN	91	79.661	ENSPLAG00000006395	parn	84	72.896	Poecilia_latipinna
ENSCJAG00000015866	PARN	91	79.661	ENSPMEG00000007711	parn	84	73.064	Poecilia_mexicana
ENSCJAG00000015866	PARN	91	79.661	ENSPREG00000000147	parn	84	72.727	Poecilia_reticulata
ENSCJAG00000015866	PARN	100	98.305	ENSPPYG00000007123	PARN	100	97.192	Pongo_abelii
ENSCJAG00000015866	PARN	93	96.154	ENSPCAG00000001741	PARN	100	82.673	Procavia_capensis
ENSCJAG00000015866	PARN	100	98.462	ENSPCOG00000019292	PARN	100	98.462	Propithecus_coquereli
ENSCJAG00000015866	PARN	98	98.077	ENSPVAG00000002547	PARN	100	89.241	Pteropus_vampyrus
ENSCJAG00000015866	PARN	91	77.966	ENSPNYG00000006835	parn	90	74.674	Pundamilia_nyererei
ENSCJAG00000015866	PARN	84	73.557	ENSPNAG00000018905	parn	86	73.557	Pygocentrus_nattereri
ENSCJAG00000015866	PARN	100	93.220	ENSRNOG00000002912	Parn	98	87.879	Rattus_norvegicus
ENSCJAG00000015866	PARN	72	97.297	ENSRBIG00000018726	PARN	100	97.297	Rhinopithecus_bieti
ENSCJAG00000015866	PARN	72	97.297	ENSRROG00000011162	-	100	97.297	Rhinopithecus_roxellana
ENSCJAG00000015866	PARN	92	98.333	ENSRROG00000020116	-	86	98.361	Rhinopithecus_roxellana
ENSCJAG00000015866	PARN	100	100.000	ENSSBOG00000034726	PARN	100	100.000	Saimiri_boliviensis_boliviensis
ENSCJAG00000015866	PARN	83	88.889	ENSSHAG00000008493	PARN	94	93.062	Sarcophilus_harrisii
ENSCJAG00000015866	PARN	94	79.661	ENSSFOG00015014165	parn	94	73.720	Scleropages_formosus
ENSCJAG00000015866	PARN	91	76.271	ENSSMAG00000000685	parn	100	61.927	Scophthalmus_maximus
ENSCJAG00000015866	PARN	94	76.271	ENSSDUG00000014555	parn	83	73.720	Seriola_dumerili
ENSCJAG00000015866	PARN	91	76.271	ENSSLDG00000007603	-	100	64.706	Seriola_lalandi_dorsalis
ENSCJAG00000015866	PARN	91	80.345	ENSSARG00000014339	PARN	100	80.345	Sorex_araneus
ENSCJAG00000015866	PARN	100	89.831	ENSSPUG00000007719	PARN	100	85.133	Sphenodon_punctatus
ENSCJAG00000015866	PARN	91	77.966	ENSSPAG00000007095	parn	86	75.094	Stegastes_partitus
ENSCJAG00000015866	PARN	100	98.305	ENSSSCG00000007878	PARN	89	92.332	Sus_scrofa
ENSCJAG00000015866	PARN	99	87.037	ENSTGUG00000004971	PARN	99	83.281	Taeniopygia_guttata
ENSCJAG00000015866	PARN	56	30.663	ENSTGUG00000011418	PNLDC1	68	31.198	Taeniopygia_guttata
ENSCJAG00000015866	PARN	100	71.212	ENSTRUG00000015208	-	94	71.212	Takifugu_rubripes
ENSCJAG00000015866	PARN	100	79.661	ENSTNIG00000008252	parn	100	69.706	Tetraodon_nigroviridis
ENSCJAG00000015866	PARN	91	79.138	ENSTBEG00000010407	PARN	100	79.138	Tupaia_belangeri
ENSCJAG00000015866	PARN	98	98.077	ENSTTRG00000002843	PARN	100	87.975	Tursiops_truncatus
ENSCJAG00000015866	PARN	68	83.028	ENSUAMG00000008283	PARN	90	83.028	Ursus_americanus
ENSCJAG00000015866	PARN	100	98.305	ENSUMAG00000004527	PARN	100	92.488	Ursus_maritimus
ENSCJAG00000015866	PARN	95	98.077	ENSVPAG00000008968	PARN	100	89.414	Vicugna_pacos
ENSCJAG00000015866	PARN	100	96.610	ENSVVUG00000019509	PARN	100	92.645	Vulpes_vulpes
ENSCJAG00000015866	PARN	100	81.967	ENSXETG00000010994	parn	100	83.460	Xenopus_tropicalis
ENSCJAG00000015866	PARN	91	79.661	ENSXCOG00000015990	parn	96	69.661	Xiphophorus_couchianus
ENSCJAG00000015866	PARN	94	79.661	ENSXMAG00000014783	parn	84	73.401	Xiphophorus_maculatus