EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000016290 (Gene tree)
Gene ID: 100385179
Gene Symbol: -
Alias: -
Full Name: survival motor neuron protein
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 47799 bases
Position: chrNTIC01011112.1:65139308-65187106
Accession: 100385179
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000064428	SMN	PF06003.12	1.4e-99	1	1
ENSCJAP00000015046	SMN	PF06003.12	2.1e-94	1	1
ENSCJAP00000063636	SMN	PF06003.12	4.3e-94	1	1
ENSCJAP00000029997	SMN	PF06003.12	5.4e-93	1	2
ENSCJAP00000029997	SMN	PF06003.12	5.4e-93	2	2
ENSCJAP00000029999	SMN	PF06003.12	9.2e-54	1	2
ENSCJAP00000029999	SMN	PF06003.12	9.2e-54	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000015877	-	888	-	ENSCJAP00000015046	295 (aa)	-	F7G6S9
ENSCJAT00000031702	-	789	-	ENSCJAP00000029997	262 (aa)	XP_002744928	U3D2P9
ENSCJAT00000069460	-	1058	-	ENSCJAP00000064428	295 (aa)	-	U3CEE1
ENSCJAT00000069470	-	879	-	ENSCJAP00000063636	292 (aa)	-	A0A2R8PH12
ENSCJAT00000031704	-	687	-	ENSCJAP00000029999	228 (aa)	-	F7I0B0

Gene Model

Click here to download ENSCJAG00000016290's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000016290's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000016290	-	100	95.604	ENSG00000205571	SMN2	98	97.778	Homo_sapiens
ENSCJAG00000016290	-	100	95.604	ENSG00000172062	SMN1	100	95.604	Homo_sapiens
ENSCJAG00000016290	-	92	49.275	ENSAPOG00000011324	smn1	94	54.122	Acanthochromis_polyacanthus
ENSCJAG00000016290	-	94	88.750	ENSAMEG00000003316	-	93	87.234	Ailuropoda_melanoleuca
ENSCJAG00000016290	-	88	46.970	ENSACIG00000019772	-	97	50.385	Amphilophus_citrinellus
ENSCJAG00000016290	-	92	49.630	ENSAOCG00000024444	smn1	94	53.763	Amphiprion_ocellaris
ENSCJAG00000016290	-	92	50.000	ENSAPEG00000016504	smn1	94	53.759	Amphiprion_percula
ENSCJAG00000016290	-	89	50.370	ENSATEG00000002182	smn1	83	52.297	Anabas_testudineus
ENSCJAG00000016290	-	68	54.229	ENSAPLG00000010912	-	97	52.736	Anas_platyrhynchos
ENSCJAG00000016290	-	84	81.633	ENSACAG00000010017	-	95	58.209	Anolis_carolinensis
ENSCJAG00000016290	-	100	96.622	ENSANAG00000032133	-	100	96.622	Aotus_nancymaae
ENSCJAG00000016290	-	92	52.857	ENSACLG00000007308	smn1	88	54.440	Astatotilapia_calliptera
ENSCJAG00000016290	-	54	57.746	ENSAMXG00000013884	smn1	97	47.794	Astyanax_mexicanus
ENSCJAG00000016290	-	95	82.979	ENSBTAG00000005743	SMN2	97	83.274	Bos_taurus
ENSCJAG00000016290	-	85	32.751	WBGene00004887	smn-1	94	31.532	Caenorhabditis_elegans
ENSCJAG00000016290	-	95	85.816	ENSCAFG00000007812	SMN	97	85.816	Canis_familiaris
ENSCJAG00000016290	-	95	85.816	ENSCAFG00020019229	-	90	85.816	Canis_lupus_dingo
ENSCJAG00000016290	-	95	84.043	ENSCHIG00000015559	-	95	84.342	Capra_hircus
ENSCJAG00000016290	-	99	88.077	ENSTSYG00000012058	-	96	92.500	Carlito_syrichta
ENSCJAG00000016290	-	75	70.909	ENSCAPG00000011021	-	96	70.588	Cavia_aperea
ENSCJAG00000016290	-	98	81.145	ENSCPOG00000012328	-	96	81.597	Cavia_porcellus
ENSCJAG00000016290	-	99	81.973	ENSCPOG00000036973	-	99	81.633	Cavia_porcellus
ENSCJAG00000016290	-	100	98.901	ENSCCAG00000018127	-	100	98.473	Cebus_capucinus
ENSCJAG00000016290	-	100	96.703	ENSCATG00000037002	-	100	96.703	Cercocebus_atys
ENSCJAG00000016290	-	99	82.264	ENSCLAG00000000284	-	99	82.264	Chinchilla_lanigera
ENSCJAG00000016290	-	100	96.703	ENSCSAG00000015688	-	100	92.542	Chlorocebus_sabaeus
ENSCJAG00000016290	-	81	84.375	ENSCHOG00000007346	-	100	73.810	Choloepus_hoffmanni
ENSCJAG00000016290	-	96	63.636	ENSCPBG00000010968	-	99	62.731	Chrysemys_picta_bellii
ENSCJAG00000016290	-	100	87.833	ENSCANG00000033324	-	100	84.351	Colobus_angolensis_palliatus
ENSCJAG00000016290	-	100	96.703	ENSCANG00000038242	-	100	96.703	Colobus_angolensis_palliatus
ENSCJAG00000016290	-	99	62.116	ENSCGRG00001016998	-	96	62.766	Cricetulus_griseus_chok1gshd
ENSCJAG00000016290	-	99	80.887	ENSCGRG00001017959	-	97	81.560	Cricetulus_griseus_chok1gshd
ENSCJAG00000016290	-	99	80.887	ENSCGRG00000007698	Smn1	97	81.560	Cricetulus_griseus_crigri
ENSCJAG00000016290	-	92	50.000	ENSCSEG00000015227	smn1	97	46.403	Cynoglossus_semilaevis
ENSCJAG00000016290	-	92	48.905	ENSCVAG00000007498	smn1	94	51.493	Cyprinodon_variegatus
ENSCJAG00000016290	-	93	51.773	ENSDARG00000018494	smn1	96	52.000	Danio_rerio
ENSCJAG00000016290	-	77	72.139	ENSDNOG00000045949	-	76	70.879	Dasypus_novemcinctus
ENSCJAG00000016290	-	82	82.645	ENSDNOG00000007283	-	99	82.645	Dasypus_novemcinctus
ENSCJAG00000016290	-	99	78.169	ENSDORG00000007082	Smn1	99	76.370	Dipodomys_ordii
ENSCJAG00000016290	-	80	69.048	ENSETEG00000001406	-	89	69.022	Echinops_telfairi
ENSCJAG00000016290	-	92	40.418	ENSEBUG00000011902	smn1	92	39.630	Eptatretus_burgeri
ENSCJAG00000016290	-	95	74.113	ENSEASG00005018000	-	89	79.842	Equus_asinus_asinus
ENSCJAG00000016290	-	93	88.608	ENSECAG00000015215	-	96	84.698	Equus_caballus
ENSCJAG00000016290	-	81	87.500	ENSEEUG00000015777	-	100	79.447	Erinaceus_europaeus
ENSCJAG00000016290	-	86	73.077	ENSELUG00000018067	smn1	94	51.254	Esox_lucius
ENSCJAG00000016290	-	99	87.692	ENSFCAG00000028292	SMN	96	91.250	Felis_catus
ENSCJAG00000016290	-	89	60.000	ENSFALG00000012320	-	91	60.000	Ficedula_albicollis
ENSCJAG00000016290	-	99	78.188	ENSFDAG00000017683	-	99	79.195	Fukomys_damarensis
ENSCJAG00000016290	-	87	46.212	ENSFHEG00000018508	smn1	96	51.311	Fundulus_heteroclitus
ENSCJAG00000016290	-	95	47.143	ENSGMOG00000017279	smn1	93	47.674	Gadus_morhua
ENSCJAG00000016290	-	92	58.608	ENSGALG00000002430	SMN	95	56.777	Gallus_gallus
ENSCJAG00000016290	-	90	56.612	ENSGAFG00000009501	smn1	93	56.846	Gambusia_affinis
ENSCJAG00000016290	-	92	51.825	ENSGACG00000010584	smn1	91	52.692	Gasterosteus_aculeatus
ENSCJAG00000016290	-	94	37.559	ENSGAGG00000013639	-	90	38.542	Gopherus_agassizii
ENSCJAG00000016290	-	96	63.636	ENSGAGG00000011374	-	97	62.411	Gopherus_agassizii
ENSCJAG00000016290	-	100	81.679	ENSGGOG00000026704	-	91	94.330	Gorilla_gorilla
ENSCJAG00000016290	-	97	95.604	ENSGGOG00000003872	-	100	94.715	Gorilla_gorilla
ENSCJAG00000016290	-	91	56.134	ENSHBUG00000013987	smn1	94	54.307	Haplochromis_burtoni
ENSCJAG00000016290	-	99	77.816	ENSHGLG00000001905	-	99	77.816	Heterocephalus_glaber_female
ENSCJAG00000016290	-	99	78.859	ENSHGLG00000001018	-	96	80.139	Heterocephalus_glaber_female
ENSCJAG00000016290	-	99	78.859	ENSHGLG00100011252	-	96	80.139	Heterocephalus_glaber_male
ENSCJAG00000016290	-	96	77.385	ENSHGLG00100018676	-	100	77.385	Heterocephalus_glaber_male
ENSCJAG00000016290	-	85	82.609	ENSHCOG00000017136	smn1	87	50.584	Hippocampus_comes
ENSCJAG00000016290	-	91	52.416	ENSIPUG00000012580	smn1	83	50.181	Ictalurus_punctatus
ENSCJAG00000016290	-	95	86.429	ENSSTOG00000012288	-	100	86.429	Ictidomys_tridecemlineatus
ENSCJAG00000016290	-	66	60.920	ENSJJAG00000014853	-	89	64.000	Jaculus_jaculus
ENSCJAG00000016290	-	92	48.780	ENSKMAG00000007239	smn1	55	62.658	Kryptolebias_marmoratus
ENSCJAG00000016290	-	92	48.805	ENSLBEG00000022550	smn1	94	49.632	Labrus_bergylta
ENSCJAG00000016290	-	92	37.011	ENSLACG00000009808	-	90	36.131	Latimeria_chalumnae
ENSCJAG00000016290	-	90	56.504	ENSLOCG00000011339	smn1	93	57.613	Lepisosteus_oculatus
ENSCJAG00000016290	-	99	86.813	ENSLAFG00000003425	-	99	80.142	Loxodonta_africana
ENSCJAG00000016290	-	100	88.814	ENSMFAG00000008812	-	100	88.814	Macaca_fascicularis
ENSCJAG00000016290	-	100	97.802	ENSMFAG00000031523	SMN1	100	97.802	Macaca_fascicularis
ENSCJAG00000016290	-	100	97.802	ENSMMUG00000020214	SMN1	100	97.802	Macaca_mulatta
ENSCJAG00000016290	-	100	88.136	ENSMMUG00000030594	-	100	88.136	Macaca_mulatta
ENSCJAG00000016290	-	100	97.802	ENSMNEG00000035094	-	100	97.802	Macaca_nemestrina
ENSCJAG00000016290	-	76	79.911	ENSMNEG00000036423	-	87	79.911	Macaca_nemestrina
ENSCJAG00000016290	-	100	96.703	ENSMLEG00000041902	-	100	96.703	Mandrillus_leucophaeus
ENSCJAG00000016290	-	91	53.676	ENSMAMG00000011034	smn1	58	60.947	Mastacembelus_armatus
ENSCJAG00000016290	-	91	55.311	ENSMZEG00005013634	smn1	94	54.307	Maylandia_zebra
ENSCJAG00000016290	-	67	54.000	ENSMGAG00000008889	-	95	51.500	Meleagris_gallopavo
ENSCJAG00000016290	-	99	79.181	ENSMAUG00000010262	Smn1	96	81.071	Mesocricetus_auratus
ENSCJAG00000016290	-	99	87.912	ENSMICG00000034708	-	99	87.912	Microcebus_murinus
ENSCJAG00000016290	-	99	79.181	ENSMOCG00000017833	Smn1	97	79.787	Microtus_ochrogaster
ENSCJAG00000016290	-	92	51.273	ENSMMOG00000005504	smn1	93	52.590	Mola_mola
ENSCJAG00000016290	-	87	85.000	ENSMODG00000001436	-	95	69.825	Monodelphis_domestica
ENSCJAG00000016290	-	91	51.079	ENSMALG00000008025	smn1	94	51.254	Monopterus_albus
ENSCJAG00000016290	-	99	78.912	MGP_CAROLIEiJ_G0018836	Smn1	96	81.071	Mus_caroli
ENSCJAG00000016290	-	99	78.912	ENSMUSG00000021645	Smn1	96	81.071	Mus_musculus
ENSCJAG00000016290	-	99	81.319	MGP_PahariEiJ_G0015911	Smn1	96	77.143	Mus_pahari
ENSCJAG00000016290	-	99	78.231	MGP_SPRETEiJ_G0019718	Smn1	96	80.357	Mus_spretus
ENSCJAG00000016290	-	95	87.189	ENSMPUG00000014470	-	95	88.148	Mustela_putorius_furo
ENSCJAG00000016290	-	94	88.750	ENSMLUG00000010603	-	92	85.714	Myotis_lucifugus
ENSCJAG00000016290	-	99	81.229	ENSNGAG00000019833	Smn1	97	82.270	Nannospalax_galili
ENSCJAG00000016290	-	91	54.255	ENSNBRG00000023000	smn1	94	54.676	Neolamprologus_brichardi
ENSCJAG00000016290	-	100	94.656	ENSNLEG00000004454	-	100	94.656	Nomascus_leucogenys
ENSCJAG00000016290	-	78	63.755	ENSMEUG00000011393	-	99	65.217	Notamacropus_eugenii
ENSCJAG00000016290	-	81	89.062	ENSOPRG00000002015	-	100	81.102	Ochotona_princeps
ENSCJAG00000016290	-	95	80.702	ENSODEG00000015976	-	97	80.702	Octodon_degus
ENSCJAG00000016290	-	92	53.521	ENSONIG00000011799	smn1	95	53.929	Oreochromis_niloticus
ENSCJAG00000016290	-	78	90.698	ENSOANG00000001626	-	95	66.058	Ornithorhynchus_anatinus
ENSCJAG00000016290	-	94	88.406	ENSOCUG00000026649	-	97	80.690	Oryctolagus_cuniculus
ENSCJAG00000016290	-	99	81.911	ENSOCUG00000017097	-	99	81.911	Oryctolagus_cuniculus
ENSCJAG00000016290	-	99	80.690	ENSOCUG00000025183	-	96	77.465	Oryctolagus_cuniculus
ENSCJAG00000016290	-	60	60.759	ENSORLG00000010552	smn1	94	46.667	Oryzias_latipes
ENSCJAG00000016290	-	86	63.889	ENSORLG00020007936	smn1	93	55.691	Oryzias_latipes_hni
ENSCJAG00000016290	-	92	53.818	ENSORLG00015022425	smn1	94	50.554	Oryzias_latipes_hsok
ENSCJAG00000016290	-	58	62.914	ENSOMEG00000007824	smn1	54	62.420	Oryzias_melastigma
ENSCJAG00000016290	-	91	78.229	ENSOGAG00000031414	-	94	77.491	Otolemur_garnettii
ENSCJAG00000016290	-	93	81.091	ENSOARG00000005425	-	99	81.091	Ovis_aries
ENSCJAG00000016290	-	100	95.604	ENSPPAG00000036640	-	100	95.604	Pan_paniscus
ENSCJAG00000016290	-	99	88.077	ENSPPRG00000005575	-	96	91.250	Panthera_pardus
ENSCJAG00000016290	-	99	88.077	ENSPTIG00000007745	-	96	91.250	Panthera_tigris_altaica
ENSCJAG00000016290	-	100	95.604	ENSPTRG00000016955	-	100	95.604	Pan_troglodytes
ENSCJAG00000016290	-	100	96.703	ENSPANG00000013601	-	100	96.703	Papio_anubis
ENSCJAG00000016290	-	98	87.586	ENSPANG00000000253	-	98	87.889	Papio_anubis
ENSCJAG00000016290	-	76	91.892	ENSPKIG00000011096	smn1	93	55.328	Paramormyrops_kingsleyae
ENSCJAG00000016290	-	90	63.291	ENSPSIG00000014787	-	90	57.196	Pelodiscus_sinensis
ENSCJAG00000016290	-	92	50.000	ENSPMGG00000012285	smn1	94	50.579	Periophthalmus_magnuspinnatus
ENSCJAG00000016290	-	89	42.279	ENSPMAG00000005004	smn1	91	38.376	Petromyzon_marinus
ENSCJAG00000016290	-	87	83.333	ENSPCIG00000025764	-	97	70.175	Phascolarctos_cinereus
ENSCJAG00000016290	-	92	53.623	ENSPFOG00000007786	smn1	94	53.091	Poecilia_formosa
ENSCJAG00000016290	-	90	57.025	ENSPLAG00000012071	smn1	93	58.506	Poecilia_latipinna
ENSCJAG00000016290	-	90	56.612	ENSPMEG00000017085	smn1	93	58.091	Poecilia_mexicana
ENSCJAG00000016290	-	90	58.264	ENSPREG00000005824	smn1	93	58.506	Poecilia_reticulata
ENSCJAG00000016290	-	83	63.303	ENSPPYG00000019189	-	99	64.679	Pongo_abelii
ENSCJAG00000016290	-	92	91.111	ENSPPYG00000015533	-	97	91.111	Pongo_abelii
ENSCJAG00000016290	-	87	84.375	ENSPCAG00000004187	-	99	78.967	Procavia_capensis
ENSCJAG00000016290	-	87	74.561	ENSPCOG00000022307	-	99	76.754	Propithecus_coquereli
ENSCJAG00000016290	-	99	85.666	ENSPVAG00000005977	-	99	85.666	Pteropus_vampyrus
ENSCJAG00000016290	-	91	54.255	ENSPNYG00000014148	smn1	94	54.676	Pundamilia_nyererei
ENSCJAG00000016290	-	92	51.111	ENSPNAG00000014007	smn1	82	47.547	Pygocentrus_nattereri
ENSCJAG00000016290	-	99	77.891	ENSRNOG00000018067	Smn1	96	79.004	Rattus_norvegicus
ENSCJAG00000016290	-	100	96.703	ENSRBIG00000037052	-	100	96.703	Rhinopithecus_bieti
ENSCJAG00000016290	-	93	91.209	ENSRBIG00000036775	-	95	79.151	Rhinopithecus_bieti
ENSCJAG00000016290	-	100	96.703	ENSRROG00000039399	-	100	96.703	Rhinopithecus_roxellana
ENSCJAG00000016290	-	100	81.387	ENSRROG00000031088	-	100	78.102	Rhinopithecus_roxellana
ENSCJAG00000016290	-	84	92.000	ENSSBOG00000020112	-	87	90.400	Saimiri_boliviensis_boliviensis
ENSCJAG00000016290	-	100	99.237	ENSSBOG00000011665	-	100	99.237	Saimiri_boliviensis_boliviensis
ENSCJAG00000016290	-	99	68.027	ENSSHAG00000001499	-	96	70.370	Sarcophilus_harrisii
ENSCJAG00000016290	-	90	53.659	ENSSFOG00015015507	smn1	94	53.659	Scleropages_formosus
ENSCJAG00000016290	-	92	48.000	ENSSMAG00000007922	smn1	94	51.971	Scophthalmus_maximus
ENSCJAG00000016290	-	92	52.747	ENSSDUG00000018533	smn1	94	51.971	Seriola_dumerili
ENSCJAG00000016290	-	92	53.114	ENSSLDG00000021135	smn1	94	52.330	Seriola_lalandi_dorsalis
ENSCJAG00000016290	-	91	62.868	ENSSPUG00000000373	-	93	63.469	Sphenodon_punctatus
ENSCJAG00000016290	-	90	52.713	ENSSPAG00000004345	smn1	94	54.150	Stegastes_partitus
ENSCJAG00000016290	-	99	86.007	ENSSSCG00000016970	-	99	86.007	Sus_scrofa
ENSCJAG00000016290	-	97	64.961	ENSSSCG00000029127	-	96	65.323	Sus_scrofa
ENSCJAG00000016290	-	72	56.542	ENSSSCG00000033865	-	94	60.104	Sus_scrofa
ENSCJAG00000016290	-	94	57.801	ENSTGUG00000001548	-	96	55.839	Taeniopygia_guttata
ENSCJAG00000016290	-	91	48.689	ENSTRUG00000000736	smn	95	49.254	Takifugu_rubripes
ENSCJAG00000016290	-	52	62.162	ENSTNIG00000009892	smn1	95	47.232	Tetraodon_nigroviridis
ENSCJAG00000016290	-	70	88.043	ENSTBEG00000002399	-	89	88.043	Tupaia_belangeri
ENSCJAG00000016290	-	94	86.250	ENSTTRG00000005080	-	95	83.333	Tursiops_truncatus
ENSCJAG00000016290	-	70	88.043	ENSUAMG00000024947	-	67	88.043	Ursus_americanus
ENSCJAG00000016290	-	94	90.000	ENSUMAG00000007842	-	72	87.943	Ursus_maritimus
ENSCJAG00000016290	-	88	88.750	ENSVPAG00000009887	-	96	73.881	Vicugna_pacos
ENSCJAG00000016290	-	95	85.816	ENSVVUG00000006934	-	97	85.816	Vulpes_vulpes
ENSCJAG00000016290	-	90	37.895	ENSXETG00000004912	-	79	58.730	Xenopus_tropicalis
ENSCJAG00000016290	-	90	67.073	ENSXETG00000018189	smn2	95	51.986	Xenopus_tropicalis
ENSCJAG00000016290	-	91	56.967	ENSXMAG00000001521	smn1	94	57.202	Xiphophorus_maculatus