EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000016946 (Gene tree)
Gene ID: 100405163
Gene Symbol: SLIRP
Alias: C14orf156|DC50
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 58926 bases
Position: chrNTIC01038834.1:26233651-26292576
Accession: 100405163
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000058188	RRM_1	PF00076.22	1.4e-14	1	1
ENSCJAP00000031167	RRM_1	PF00076.22	1.5e-14	1	1
ENSCJAP00000060430	RRM_1	PF00076.22	2.6e-14	1	1
ENSCJAP00000052809	RRM_1	PF00076.22	3.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000081799	SLIRP-201	375	-	ENSCJAP00000052809	124 (aa)	-	A0A2R8M2T8
ENSCJAT00000032937	SLIRP-204	279	-	ENSCJAP00000031167	93 (aa)	-	F7IM91
ENSCJAT00000032389	SLIRP-202	297	-	ENSCJAP00000058188	98 (aa)	-	A0A2R8ME45
ENSCJAT00000072835	SLIRP-203	773	-	ENSCJAP00000060430	108 (aa)	XP_002754206	A0A2R8MIM1

Gene Model

Click here to download ENSCJAG00000016946's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000016946's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000016946	SLIRP	73	35.294	ENSCJAG00000019139	RBM38	69	33.735
ENSCJAG00000016946	SLIRP	96	32.000	ENSCJAG00000013998	MSI2	63	32.000
ENSCJAG00000016946	SLIRP	87	30.769	ENSCJAG00000012235	HNRNPAB	54	30.769
ENSCJAG00000016946	SLIRP	85	30.380	ENSCJAG00000045227	-	58	30.380

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000016946	SLIRP	89	82.727	ENSG00000119705	SLIRP	100	83.673	Homo_sapiens
ENSCJAG00000016946	SLIRP	72	58.209	ENSAPOG00000001298	slirp	74	59.459	Acanthochromis_polyacanthus
ENSCJAG00000016946	SLIRP	96	80.899	ENSAMEG00000003975	SLIRP	100	79.121	Ailuropoda_melanoleuca
ENSCJAG00000016946	SLIRP	72	56.716	ENSACIG00000023083	slirp	73	58.108	Amphilophus_citrinellus
ENSCJAG00000016946	SLIRP	72	58.209	ENSAOCG00000006342	slirp	75	59.459	Amphiprion_ocellaris
ENSCJAG00000016946	SLIRP	73	57.353	ENSAPEG00000015917	slirp	75	59.459	Amphiprion_percula
ENSCJAG00000016946	SLIRP	73	57.353	ENSAPEG00000015719	-	76	59.459	Amphiprion_percula
ENSCJAG00000016946	SLIRP	72	56.716	ENSATEG00000013525	slirp	77	55.844	Anabas_testudineus
ENSCJAG00000016946	SLIRP	72	56.716	ENSAMXG00000018693	slirp	78	55.128	Astyanax_mexicanus
ENSCJAG00000016946	SLIRP	100	73.874	ENSCAFG00020015876	-	100	73.874	Canis_lupus_dingo
ENSCJAG00000016946	SLIRP	100	94.444	ENSCCAG00000030130	SLIRP	100	94.444	Cebus_capucinus
ENSCJAG00000016946	SLIRP	99	88.043	ENSCATG00000036327	SLIRP	99	88.043	Cercocebus_atys
ENSCJAG00000016946	SLIRP	90	85.714	ENSCSAG00000011736	SLIRP	100	84.404	Chlorocebus_sabaeus
ENSCJAG00000016946	SLIRP	85	51.852	ENSCPBG00000026327	SLIRP	87	50.000	Chrysemys_picta_bellii
ENSCJAG00000016946	SLIRP	84	88.462	ENSCANG00000032892	SLIRP	100	83.673	Colobus_angolensis_palliatus
ENSCJAG00000016946	SLIRP	95	78.409	ENSCGRG00001024068	Slirp	100	70.270	Cricetulus_griseus_chok1gshd
ENSCJAG00000016946	SLIRP	95	78.409	ENSCGRG00000017440	Slirp	100	70.270	Cricetulus_griseus_crigri
ENSCJAG00000016946	SLIRP	72	58.209	ENSCSEG00000015766	slirp	72	57.746	Cynoglossus_semilaevis
ENSCJAG00000016946	SLIRP	72	62.687	ENSCVAG00000012504	slirp	68	60.870	Cyprinodon_variegatus
ENSCJAG00000016946	SLIRP	73	58.824	ENSDARG00000097753	slirp	72	60.811	Danio_rerio
ENSCJAG00000016946	SLIRP	81	72.222	ENSDNOG00000007721	SLIRP	100	65.455	Dasypus_novemcinctus
ENSCJAG00000016946	SLIRP	100	71.171	ENSDORG00000012379	Slirp	100	71.171	Dipodomys_ordii
ENSCJAG00000016946	SLIRP	90	73.196	ENSETEG00000010345	SLIRP	100	71.296	Echinops_telfairi
ENSCJAG00000016946	SLIRP	100	80.180	ENSEASG00005020193	SLIRP	100	80.180	Equus_asinus_asinus
ENSCJAG00000016946	SLIRP	92	59.406	ENSEEUG00000007257	SLIRP	100	59.406	Erinaceus_europaeus
ENSCJAG00000016946	SLIRP	70	56.923	ENSELUG00000016800	slirp	73	56.757	Esox_lucius
ENSCJAG00000016946	SLIRP	97	85.556	ENSFCAG00000036326	SLIRP	98	83.505	Felis_catus
ENSCJAG00000016946	SLIRP	72	52.239	ENSFALG00000012583	SLIRP	88	48.936	Ficedula_albicollis
ENSCJAG00000016946	SLIRP	96	71.277	ENSFDAG00000008347	SLIRP	93	70.476	Fukomys_damarensis
ENSCJAG00000016946	SLIRP	62	58.621	ENSFHEG00000004709	slirp	71	60.000	Fundulus_heteroclitus
ENSCJAG00000016946	SLIRP	72	58.209	ENSGMOG00000016948	slirp	71	58.108	Gadus_morhua
ENSCJAG00000016946	SLIRP	84	50.000	ENSGALG00000031238	SLIRP	89	49.412	Gallus_gallus
ENSCJAG00000016946	SLIRP	81	56.180	ENSGAFG00000010998	slirp	89	56.180	Gambusia_affinis
ENSCJAG00000016946	SLIRP	81	52.500	ENSGACG00000020137	slirp	97	51.807	Gasterosteus_aculeatus
ENSCJAG00000016946	SLIRP	91	56.044	ENSGAGG00000009953	SLIRP	62	58.889	Gopherus_agassizii
ENSCJAG00000016946	SLIRP	89	82.727	ENSGGOG00000011059	-	100	83.673	Gorilla_gorilla
ENSCJAG00000016946	SLIRP	100	65.766	ENSHGLG00000018491	SLIRP	100	65.766	Heterocephalus_glaber_female
ENSCJAG00000016946	SLIRP	100	65.766	ENSHGLG00100014153	SLIRP	100	65.766	Heterocephalus_glaber_male
ENSCJAG00000016946	SLIRP	72	64.179	ENSHCOG00000006795	slirp	77	65.789	Hippocampus_comes
ENSCJAG00000016946	SLIRP	80	52.874	ENSIPUG00000010214	SLIRP	87	52.874	Ictalurus_punctatus
ENSCJAG00000016946	SLIRP	90	77.000	ENSSTOG00000034316	SLIRP	100	76.577	Ictidomys_tridecemlineatus
ENSCJAG00000016946	SLIRP	85	46.465	ENSKMAG00000002038	slirp	95	46.465	Kryptolebias_marmoratus
ENSCJAG00000016946	SLIRP	81	53.409	ENSLBEG00000007564	slirp	88	53.409	Labrus_bergylta
ENSCJAG00000016946	SLIRP	74	56.522	ENSLACG00000013434	SLIRP	72	56.000	Latimeria_chalumnae
ENSCJAG00000016946	SLIRP	87	90.123	ENSMFAG00000042960	SLIRP	99	86.957	Macaca_fascicularis
ENSCJAG00000016946	SLIRP	87	90.123	ENSMMUG00000029256	SLIRP	99	88.043	Macaca_mulatta
ENSCJAG00000016946	SLIRP	87	90.123	ENSMNEG00000028921	SLIRP	99	86.957	Macaca_nemestrina
ENSCJAG00000016946	SLIRP	99	88.043	ENSMLEG00000043644	SLIRP	100	85.714	Mandrillus_leucophaeus
ENSCJAG00000016946	SLIRP	81	53.409	ENSMZEG00005004617	slirp	89	53.409	Maylandia_zebra
ENSCJAG00000016946	SLIRP	95	77.273	ENSMAUG00000003857	Slirp	100	71.171	Mesocricetus_auratus
ENSCJAG00000016946	SLIRP	96	80.899	ENSMICG00000012080	SLIRP	100	75.000	Microcebus_murinus
ENSCJAG00000016946	SLIRP	95	79.545	ENSMOCG00000016019	Slirp	97	73.394	Microtus_ochrogaster
ENSCJAG00000016946	SLIRP	72	56.716	ENSMMOG00000018268	slirp	74	58.108	Mola_mola
ENSCJAG00000016946	SLIRP	74	63.768	ENSMODG00000005207	-	100	61.972	Monodelphis_domestica
ENSCJAG00000016946	SLIRP	72	56.716	ENSMALG00000012581	slirp	76	58.108	Monopterus_albus
ENSCJAG00000016946	SLIRP	95	78.409	MGP_CAROLIEiJ_G0017995	Slirp	100	74.074	Mus_caroli
ENSCJAG00000016946	SLIRP	95	79.545	ENSMUSG00000021040	Slirp	97	74.312	Mus_musculus
ENSCJAG00000016946	SLIRP	95	79.545	MGP_SPRETEiJ_G0018840	Slirp	97	74.312	Mus_spretus
ENSCJAG00000016946	SLIRP	90	77.000	ENSMLUG00000029544	-	100	73.874	Myotis_lucifugus
ENSCJAG00000016946	SLIRP	85	77.895	ENSMLUG00000024998	-	100	73.874	Myotis_lucifugus
ENSCJAG00000016946	SLIRP	91	73.786	ENSNGAG00000016363	Slirp	99	73.786	Nannospalax_galili
ENSCJAG00000016946	SLIRP	93	76.238	ENSNLEG00000027238	-	97	76.471	Nomascus_leucogenys
ENSCJAG00000016946	SLIRP	100	81.633	ENSNLEG00000032459	-	100	81.633	Nomascus_leucogenys
ENSCJAG00000016946	SLIRP	96	76.404	ENSODEG00000012580	SLIRP	99	75.824	Octodon_degus
ENSCJAG00000016946	SLIRP	72	58.209	ENSONIG00000011692	slirp	75	59.459	Oreochromis_niloticus
ENSCJAG00000016946	SLIRP	95	61.364	ENSOANG00000022366	SLIRP	98	53.211	Ornithorhynchus_anatinus
ENSCJAG00000016946	SLIRP	72	58.209	ENSORLG00000010761	slirp	57	59.459	Oryzias_latipes
ENSCJAG00000016946	SLIRP	72	59.701	ENSORLG00020022188	slirp	74	60.811	Oryzias_latipes_hni
ENSCJAG00000016946	SLIRP	72	58.209	ENSORLG00015020171	slirp	73	59.459	Oryzias_latipes_hsok
ENSCJAG00000016946	SLIRP	72	59.701	ENSOMEG00000019321	slirp	74	60.811	Oryzias_melastigma
ENSCJAG00000016946	SLIRP	89	82.727	ENSPPAG00000040710	-	100	82.653	Pan_paniscus
ENSCJAG00000016946	SLIRP	99	84.536	ENSPPRG00000014350	SLIRP	98	84.536	Panthera_pardus
ENSCJAG00000016946	SLIRP	99	84.536	ENSPTIG00000014196	SLIRP	98	84.536	Panthera_tigris_altaica
ENSCJAG00000016946	SLIRP	89	82.727	ENSPTRG00000030691	SLIRP	100	82.653	Pan_troglodytes
ENSCJAG00000016946	SLIRP	99	89.130	ENSPANG00000026323	SLIRP	99	89.130	Papio_anubis
ENSCJAG00000016946	SLIRP	61	61.404	ENSPKIG00000008831	slirp	67	57.353	Paramormyrops_kingsleyae
ENSCJAG00000016946	SLIRP	72	64.179	ENSPMGG00000010541	slirp	87	57.895	Periophthalmus_magnuspinnatus
ENSCJAG00000016946	SLIRP	83	80.519	ENSPEMG00000013234	Slirp	96	69.091	Peromyscus_maniculatus_bairdii
ENSCJAG00000016946	SLIRP	65	51.667	ENSPMAG00000009355	slirp	76	50.000	Petromyzon_marinus
ENSCJAG00000016946	SLIRP	85	60.494	ENSPCIG00000026842	-	89	59.036	Phascolarctos_cinereus
ENSCJAG00000016946	SLIRP	81	55.682	ENSPFOG00000006758	slirp	88	55.682	Poecilia_formosa
ENSCJAG00000016946	SLIRP	81	54.545	ENSPLAG00000011140	slirp	88	54.545	Poecilia_latipinna
ENSCJAG00000016946	SLIRP	81	55.682	ENSPMEG00000019535	slirp	88	55.682	Poecilia_mexicana
ENSCJAG00000016946	SLIRP	81	54.545	ENSPREG00000011673	slirp	88	54.545	Poecilia_reticulata
ENSCJAG00000016946	SLIRP	88	75.789	ENSPPYG00000006030	SLIRP	97	74.528	Pongo_abelii
ENSCJAG00000016946	SLIRP	96	77.528	ENSPCOG00000015159	SLIRP	100	70.968	Propithecus_coquereli
ENSCJAG00000016946	SLIRP	72	67.164	ENSPNAG00000008633	slirp	79	64.103	Pygocentrus_nattereri
ENSCJAG00000016946	SLIRP	87	82.558	ENSRBIG00000032998	-	90	81.443	Rhinopithecus_bieti
ENSCJAG00000016946	SLIRP	87	90.123	ENSRBIG00000032222	-	99	88.043	Rhinopithecus_bieti
ENSCJAG00000016946	SLIRP	88	77.895	ENSRBIG00000035817	-	100	77.358	Rhinopithecus_bieti
ENSCJAG00000016946	SLIRP	88	81.707	ENSRBIG00000031396	-	93	80.645	Rhinopithecus_bieti
ENSCJAG00000016946	SLIRP	84	85.897	ENSRROG00000041312	-	95	80.808	Rhinopithecus_roxellana
ENSCJAG00000016946	SLIRP	87	85.714	ENSRROG00000017133	-	99	84.211	Rhinopithecus_roxellana
ENSCJAG00000016946	SLIRP	87	88.889	ENSRROG00000036656	-	99	86.957	Rhinopithecus_roxellana
ENSCJAG00000016946	SLIRP	88	80.488	ENSRROG00000035604	-	93	79.570	Rhinopithecus_roxellana
ENSCJAG00000016946	SLIRP	100	90.323	ENSSBOG00000020014	SLIRP	100	90.323	Saimiri_boliviensis_boliviensis
ENSCJAG00000016946	SLIRP	72	62.687	ENSSFOG00015011165	slirp	80	55.696	Scleropages_formosus
ENSCJAG00000016946	SLIRP	71	45.455	ENSSMAG00000012930	slirp	73	44.595	Scophthalmus_maximus
ENSCJAG00000016946	SLIRP	72	62.687	ENSSDUG00000021883	slirp	55	54.762	Seriola_dumerili
ENSCJAG00000016946	SLIRP	85	54.762	ENSSLDG00000023136	slirp	76	54.762	Seriola_lalandi_dorsalis
ENSCJAG00000016946	SLIRP	86	55.556	ENSSPUG00000009346	SLIRP	89	56.322	Sphenodon_punctatus
ENSCJAG00000016946	SLIRP	72	55.224	ENSSPAG00000013477	slirp	74	55.405	Stegastes_partitus
ENSCJAG00000016946	SLIRP	100	76.577	ENSSSCG00000028167	SLIRP	100	76.577	Sus_scrofa
ENSCJAG00000016946	SLIRP	72	53.731	ENSTGUG00000012337	SLIRP	88	50.000	Taeniopygia_guttata
ENSCJAG00000016946	SLIRP	95	47.191	ENSTRUG00000020127	slirp	74	56.000	Takifugu_rubripes
ENSCJAG00000016946	SLIRP	100	76.577	ENSUAMG00000022445	SLIRP	100	76.577	Ursus_americanus
ENSCJAG00000016946	SLIRP	100	77.477	ENSUMAG00000007166	SLIRP	100	77.477	Ursus_maritimus
ENSCJAG00000016946	SLIRP	100	75.926	ENSVPAG00000001781	SLIRP	100	75.926	Vicugna_pacos
ENSCJAG00000016946	SLIRP	84	82.051	ENSVVUG00000004436	SLIRP	100	75.676	Vulpes_vulpes
ENSCJAG00000016946	SLIRP	72	59.701	ENSXETG00000030343	SLIRP	79	58.571	Xenopus_tropicalis
ENSCJAG00000016946	SLIRP	81	54.545	ENSXCOG00000009422	slirp	88	54.545	Xiphophorus_couchianus
ENSCJAG00000016946	SLIRP	81	55.682	ENSXMAG00000015655	slirp	88	55.682	Xiphophorus_maculatus