EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000017293 (Gene tree)
Gene ID: 100406527
Gene Symbol: MBD4
Alias: MED1
Full Name: methyl-CpG binding domain 4%2C DNA glycosylase
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 8969 bases
Position: chrNTIC01006668.1:65074016-65082984
Accession: 6919
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000031837	MBD	PF01429.19	2.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000033653	MBD4-201	1716	-	ENSCJAP00000031837	571 (aa)	-	F7IH19

Gene Model

Click here to download ENSCJAG00000017293's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000017293's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000017293	MBD4	100	88.621	ENSG00000129071	MBD4	100	97.222	Homo_sapiens
ENSCJAG00000017293	MBD4	99	75.880	ENSAMEG00000004562	MBD4	99	75.880	Ailuropoda_melanoleuca
ENSCJAG00000017293	MBD4	99	69.788	ENSBTAG00000021645	MBD4	100	69.788	Bos_taurus
ENSCJAG00000017293	MBD4	99	75.044	ENSCAFG00000004867	MBD4	99	75.044	Canis_familiaris
ENSCJAG00000017293	MBD4	99	75.044	ENSCAFG00020007082	MBD4	99	75.044	Canis_lupus_dingo
ENSCJAG00000017293	MBD4	99	68.728	ENSCHIG00000009760	MBD4	100	68.728	Capra_hircus
ENSCJAG00000017293	MBD4	100	92.919	ENSCCAG00000029796	MBD4	100	92.919	Cebus_capucinus
ENSCJAG00000017293	MBD4	100	86.010	ENSCATG00000035211	MBD4	100	86.010	Cercocebus_atys
ENSCJAG00000017293	MBD4	96	69.245	ENSCLAG00000008974	MBD4	98	69.245	Chinchilla_lanigera
ENSCJAG00000017293	MBD4	100	85.665	ENSCSAG00000009037	MBD4	100	85.665	Chlorocebus_sabaeus
ENSCJAG00000017293	MBD4	86	50.984	ENSCPBG00000014704	MBD4	89	50.787	Chrysemys_picta_bellii
ENSCJAG00000017293	MBD4	100	86.528	ENSCANG00000007120	MBD4	100	86.528	Colobus_angolensis_palliatus
ENSCJAG00000017293	MBD4	99	66.608	ENSCGRG00001003507	Mbd4	100	66.608	Cricetulus_griseus_chok1gshd
ENSCJAG00000017293	MBD4	99	66.608	ENSCGRG00000010974	Mbd4	100	66.608	Cricetulus_griseus_crigri
ENSCJAG00000017293	MBD4	99	73.124	ENSDNOG00000049619	MBD4	100	73.124	Dasypus_novemcinctus
ENSCJAG00000017293	MBD4	80	61.803	ENSDORG00000000902	-	97	61.263	Dipodomys_ordii
ENSCJAG00000017293	MBD4	99	76.963	ENSEASG00005014800	MBD4	100	76.963	Equus_asinus_asinus
ENSCJAG00000017293	MBD4	99	76.963	ENSECAG00000022106	MBD4	100	76.963	Equus_caballus
ENSCJAG00000017293	MBD4	95	60.759	ENSEEUG00000011459	MBD4	99	60.217	Erinaceus_europaeus
ENSCJAG00000017293	MBD4	99	76.801	ENSFCAG00000000083	MBD4	99	76.801	Felis_catus
ENSCJAG00000017293	MBD4	81	44.057	ENSFALG00000013663	MBD4	50	78.571	Ficedula_albicollis
ENSCJAG00000017293	MBD4	87	50.380	ENSGAGG00000018644	MBD4	91	50.380	Gopherus_agassizii
ENSCJAG00000017293	MBD4	100	87.759	ENSGGOG00000010698	MBD4	100	87.759	Gorilla_gorilla
ENSCJAG00000017293	MBD4	99	70.332	ENSHGLG00000009034	MBD4	100	70.332	Heterocephalus_glaber_female
ENSCJAG00000017293	MBD4	99	70.332	ENSHGLG00100000135	MBD4	100	70.332	Heterocephalus_glaber_male
ENSCJAG00000017293	MBD4	99	70.209	ENSSTOG00000020663	MBD4	100	70.209	Ictidomys_tridecemlineatus
ENSCJAG00000017293	MBD4	91	37.319	ENSLBEG00000005669	MBD4	52	77.059	Labrus_bergylta
ENSCJAG00000017293	MBD4	99	72.396	ENSLAFG00000010609	MBD4	99	72.396	Loxodonta_africana
ENSCJAG00000017293	MBD4	100	85.838	ENSMFAG00000002266	MBD4	100	85.838	Macaca_fascicularis
ENSCJAG00000017293	MBD4	100	86.059	ENSMMUG00000012723	MBD4	100	86.059	Macaca_mulatta
ENSCJAG00000017293	MBD4	96	85.458	ENSMNEG00000029752	MBD4	99	85.458	Macaca_nemestrina
ENSCJAG00000017293	MBD4	100	85.838	ENSMLEG00000024859	MBD4	100	85.838	Mandrillus_leucophaeus
ENSCJAG00000017293	MBD4	100	78.893	ENSMICG00000008022	MBD4	100	78.893	Microcebus_murinus
ENSCJAG00000017293	MBD4	67	48.072	ENSMOCG00000002466	-	97	47.558	Microtus_ochrogaster
ENSCJAG00000017293	MBD4	86	58.532	ENSMODG00000006399	-	100	58.367	Monodelphis_domestica
ENSCJAG00000017293	MBD4	99	65.913	MGP_CAROLIEiJ_G0028760	Mbd4	100	65.913	Mus_caroli
ENSCJAG00000017293	MBD4	99	65.913	ENSMUSG00000030322	Mbd4	100	65.913	Mus_musculus
ENSCJAG00000017293	MBD4	99	65.331	MGP_PahariEiJ_G0022511	-	100	65.331	Mus_pahari
ENSCJAG00000017293	MBD4	99	65.217	MGP_SPRETEiJ_G0029788	Mbd4	100	65.217	Mus_spretus
ENSCJAG00000017293	MBD4	99	74.120	ENSMPUG00000017195	MBD4	99	74.120	Mustela_putorius_furo
ENSCJAG00000017293	MBD4	92	77.196	ENSMLUG00000014766	MBD4	98	77.196	Myotis_lucifugus
ENSCJAG00000017293	MBD4	100	87.889	ENSNLEG00000005337	MBD4	100	87.889	Nomascus_leucogenys
ENSCJAG00000017293	MBD4	50	100.000	ENSMEUG00000015599	-	77	100.000	Notamacropus_eugenii
ENSCJAG00000017293	MBD4	99	64.298	ENSOPRG00000000473	MBD4	99	64.298	Ochotona_princeps
ENSCJAG00000017293	MBD4	85	40.226	ENSONIG00000017212	mbd4	54	79.532	Oreochromis_niloticus
ENSCJAG00000017293	MBD4	74	43.649	ENSOANG00000004589	-	96	43.649	Ornithorhynchus_anatinus
ENSCJAG00000017293	MBD4	99	66.552	ENSOCUG00000013006	MBD4	99	66.552	Oryctolagus_cuniculus
ENSCJAG00000017293	MBD4	99	74.390	ENSOGAG00000010236	MBD4	100	74.390	Otolemur_garnettii
ENSCJAG00000017293	MBD4	99	68.905	ENSOARG00000014699	MBD4	100	68.905	Ovis_aries
ENSCJAG00000017293	MBD4	100	87.241	ENSPPAG00000036528	MBD4	100	87.241	Pan_paniscus
ENSCJAG00000017293	MBD4	99	75.747	ENSPPRG00000016480	MBD4	99	75.747	Panthera_pardus
ENSCJAG00000017293	MBD4	100	88.276	ENSPTRG00000015377	MBD4	100	88.276	Pan_troglodytes
ENSCJAG00000017293	MBD4	100	87.047	ENSPANG00000015047	MBD4	100	87.047	Papio_anubis
ENSCJAG00000017293	MBD4	86	50.579	ENSPSIG00000007892	MBD4	88	50.579	Pelodiscus_sinensis
ENSCJAG00000017293	MBD4	94	59.083	ENSPEMG00000006226	Mbd4	99	59.083	Peromyscus_maniculatus_bairdii
ENSCJAG00000017293	MBD4	89	58.574	ENSPCIG00000002276	-	98	58.189	Phascolarctos_cinereus
ENSCJAG00000017293	MBD4	100	86.528	ENSPPYG00000013417	MBD4	100	86.528	Pongo_abelii
ENSCJAG00000017293	MBD4	95	67.450	ENSPCAG00000012915	MBD4	99	67.450	Procavia_capensis
ENSCJAG00000017293	MBD4	99	76.910	ENSPVAG00000005238	MBD4	99	76.910	Pteropus_vampyrus
ENSCJAG00000017293	MBD4	99	64.757	ENSRNOG00000010919	Mbd4	100	64.757	Rattus_norvegicus
ENSCJAG00000017293	MBD4	100	86.874	ENSRBIG00000027722	MBD4	100	86.874	Rhinopithecus_bieti
ENSCJAG00000017293	MBD4	100	86.701	ENSRROG00000029136	MBD4	100	86.701	Rhinopithecus_roxellana
ENSCJAG00000017293	MBD4	99	92.708	ENSSBOG00000016810	MBD4	100	92.535	Saimiri_boliviensis_boliviensis
ENSCJAG00000017293	MBD4	95	54.909	ENSSHAG00000012953	MBD4	96	54.909	Sarcophilus_harrisii
ENSCJAG00000017293	MBD4	85	42.629	ENSSFOG00015016292	mbd4	95	42.231	Scleropages_formosus
ENSCJAG00000017293	MBD4	64	78.736	ENSSMAG00000013958	-	56	78.736	Scophthalmus_maximus
ENSCJAG00000017293	MBD4	80	59.657	ENSSARG00000004496	-	80	59.657	Sorex_araneus
ENSCJAG00000017293	MBD4	86	49.901	ENSSPUG00000017344	MBD4	91	49.609	Sphenodon_punctatus
ENSCJAG00000017293	MBD4	99	72.648	ENSSSCG00000033303	MBD4	100	72.648	Sus_scrofa
ENSCJAG00000017293	MBD4	88	60.550	ENSTBEG00000003041	-	88	60.550	Tupaia_belangeri
ENSCJAG00000017293	MBD4	95	74.453	ENSTTRG00000011265	MBD4	98	74.453	Tursiops_truncatus
ENSCJAG00000017293	MBD4	86	77.959	ENSUAMG00000000814	MBD4	99	77.959	Ursus_americanus
ENSCJAG00000017293	MBD4	99	76.148	ENSUMAG00000017542	MBD4	100	76.148	Ursus_maritimus
ENSCJAG00000017293	MBD4	67	66.359	ENSVPAG00000004040	-	70	66.359	Vicugna_pacos
ENSCJAG00000017293	MBD4	99	75.044	ENSVVUG00000014222	MBD4	99	75.044	Vulpes_vulpes