EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000017668 (Gene tree)
Gene ID: 100401773
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 448909 bases
Position: chrNTIC01002224.1:114531145-114980053
Accession: 100401773
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000032645	TUDOR	PF00567.24	1.1e-27	1	1
ENSCJAP00000057361	TUDOR	PF00567.24	1.1e-27	1	1
ENSCJAP00000064980	TUDOR	PF00567.24	1.1e-27	1	1
ENSCJAP00000032645	SNase	PF00565.17	1.2e-69	1	5
ENSCJAP00000032645	SNase	PF00565.17	1.2e-69	2	5
ENSCJAP00000032645	SNase	PF00565.17	1.2e-69	3	5
ENSCJAP00000032645	SNase	PF00565.17	1.2e-69	4	5
ENSCJAP00000032645	SNase	PF00565.17	1.2e-69	5	5
ENSCJAP00000057361	SNase	PF00565.17	1.3e-69	1	5
ENSCJAP00000057361	SNase	PF00565.17	1.3e-69	2	5
ENSCJAP00000057361	SNase	PF00565.17	1.3e-69	3	5
ENSCJAP00000057361	SNase	PF00565.17	1.3e-69	4	5
ENSCJAP00000057361	SNase	PF00565.17	1.3e-69	5	5
ENSCJAP00000064980	SNase	PF00565.17	1.3e-69	1	5
ENSCJAP00000064980	SNase	PF00565.17	1.3e-69	2	5
ENSCJAP00000064980	SNase	PF00565.17	1.3e-69	3	5
ENSCJAP00000064980	SNase	PF00565.17	1.3e-69	4	5
ENSCJAP00000064980	SNase	PF00565.17	1.3e-69	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000075048	SND1-202	2715	-	ENSCJAP00000057361	904 (aa)	-	A0A2R8P7V0
ENSCJAT00000073970	SND1-201	6663	-	ENSCJAP00000064980	910 (aa)	XP_002752088	U3BQS3
ENSCJAT00000034502	SND1-203	2685	-	ENSCJAP00000032645	894 (aa)	-	F7DYR1

Gene Model

Click here to download ENSCJAG00000017668's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000017668's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000017668	SND1	100	98.901	ENSG00000197157	SND1	100	98.901	Homo_sapiens
ENSCJAG00000017668	SND1	99	84.876	ENSAPOG00000017599	snd1	99	84.650	Acanthochromis_polyacanthus
ENSCJAG00000017668	SND1	100	98.575	ENSAMEG00000004664	SND1	94	98.575	Ailuropoda_melanoleuca
ENSCJAG00000017668	SND1	99	81.808	ENSACIG00000003551	snd1	99	81.737	Amphilophus_citrinellus
ENSCJAG00000017668	SND1	99	84.650	ENSAOCG00000014166	snd1	99	84.427	Amphiprion_ocellaris
ENSCJAG00000017668	SND1	99	84.650	ENSAPEG00000007067	snd1	99	84.427	Amphiprion_percula
ENSCJAG00000017668	SND1	97	83.890	ENSATEG00000018475	snd1	88	83.922	Anabas_testudineus
ENSCJAG00000017668	SND1	100	99.341	ENSANAG00000034463	SND1	100	99.341	Aotus_nancymaae
ENSCJAG00000017668	SND1	99	84.086	ENSACLG00000022897	snd1	99	83.853	Astatotilapia_calliptera
ENSCJAG00000017668	SND1	99	84.910	ENSAMXG00000016318	snd1	98	84.855	Astyanax_mexicanus
ENSCJAG00000017668	SND1	100	98.681	ENSBTAG00000010692	SND1	100	98.681	Bos_taurus
ENSCJAG00000017668	SND1	98	46.872	WBGene00006626	tsn-1	98	47.311	Caenorhabditis_elegans
ENSCJAG00000017668	SND1	100	99.011	ENSCAFG00000001700	SND1	100	99.011	Canis_familiaris
ENSCJAG00000017668	SND1	100	99.011	ENSCAFG00020021639	SND1	100	99.011	Canis_lupus_dingo
ENSCJAG00000017668	SND1	100	99.011	ENSCHIG00000023390	SND1	100	99.011	Capra_hircus
ENSCJAG00000017668	SND1	75	98.424	ENSTSYG00000004979	SND1	96	98.768	Carlito_syrichta
ENSCJAG00000017668	SND1	99	85.553	ENSCAPG00000010677	SND1	98	84.821	Cavia_aperea
ENSCJAG00000017668	SND1	100	98.132	ENSCPOG00000006251	SND1	100	98.132	Cavia_porcellus
ENSCJAG00000017668	SND1	100	99.451	ENSCCAG00000036847	SND1	100	99.451	Cebus_capucinus
ENSCJAG00000017668	SND1	100	99.121	ENSCATG00000035214	SND1	100	99.121	Cercocebus_atys
ENSCJAG00000017668	SND1	100	98.022	ENSCLAG00000011796	SND1	100	98.022	Chinchilla_lanigera
ENSCJAG00000017668	SND1	100	99.121	ENSCSAG00000010182	SND1	100	99.121	Chlorocebus_sabaeus
ENSCJAG00000017668	SND1	79	90.196	ENSCHOG00000002218	SND1	86	90.196	Choloepus_hoffmanni
ENSCJAG00000017668	SND1	99	93.100	ENSCPBG00000018094	SND1	98	93.049	Chrysemys_picta_bellii
ENSCJAG00000017668	SND1	99	56.745	ENSCING00000000524	-	98	57.032	Ciona_intestinalis
ENSCJAG00000017668	SND1	99	57.978	ENSCSAVG00000008807	-	99	58.122	Ciona_savignyi
ENSCJAG00000017668	SND1	100	99.121	ENSCANG00000035119	SND1	100	99.121	Colobus_angolensis_palliatus
ENSCJAG00000017668	SND1	100	97.033	ENSCGRG00001022514	Snd1	100	97.033	Cricetulus_griseus_chok1gshd
ENSCJAG00000017668	SND1	99	97.059	ENSCGRG00000012277	Snd1	99	97.059	Cricetulus_griseus_crigri
ENSCJAG00000017668	SND1	99	84.199	ENSCSEG00000008661	snd1	98	84.228	Cynoglossus_semilaevis
ENSCJAG00000017668	SND1	99	84.989	ENSCVAG00000010316	snd1	100	83.448	Cyprinodon_variegatus
ENSCJAG00000017668	SND1	99	85.569	ENSDARG00000006766	snd1	97	87.590	Danio_rerio
ENSCJAG00000017668	SND1	99	95.937	ENSDNOG00000006795	SND1	100	95.941	Dasypus_novemcinctus
ENSCJAG00000017668	SND1	100	98.571	ENSDORG00000000336	Snd1	100	98.571	Dipodomys_ordii
ENSCJAG00000017668	SND1	98	50.494	FBgn0035121	Tudor-SN	98	50.486	Drosophila_melanogaster
ENSCJAG00000017668	SND1	91	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSCJAG00000017668	SND1	68	67.568	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSCJAG00000017668	SND1	100	97.408	ENSEASG00005008513	SND1	100	97.408	Equus_asinus_asinus
ENSCJAG00000017668	SND1	100	99.011	ENSECAG00000011451	SND1	100	99.011	Equus_caballus
ENSCJAG00000017668	SND1	100	86.593	ENSEEUG00000014737	SND1	100	86.593	Erinaceus_europaeus
ENSCJAG00000017668	SND1	99	83.183	ENSELUG00000001805	snd1	95	83.055	Esox_lucius
ENSCJAG00000017668	SND1	100	99.011	ENSFCAG00000008289	SND1	100	99.011	Felis_catus
ENSCJAG00000017668	SND1	100	98.242	ENSFDAG00000015881	SND1	100	98.242	Fukomys_damarensis
ENSCJAG00000017668	SND1	99	82.781	ENSFHEG00000004093	snd1	97	84.517	Fundulus_heteroclitus
ENSCJAG00000017668	SND1	64	74.576	ENSGMOG00000018932	snd1	64	74.576	Gadus_morhua
ENSCJAG00000017668	SND1	100	83.991	ENSGAFG00000008421	snd1	99	84.989	Gambusia_affinis
ENSCJAG00000017668	SND1	100	53.855	ENSGACG00000019793	snd1	98	54.314	Gasterosteus_aculeatus
ENSCJAG00000017668	SND1	100	99.121	ENSGGOG00000009614	SND1	100	99.121	Gorilla_gorilla
ENSCJAG00000017668	SND1	99	84.086	ENSHBUG00000019135	snd1	99	83.853	Haplochromis_burtoni
ENSCJAG00000017668	SND1	100	97.912	ENSHGLG00000003618	SND1	100	97.912	Heterocephalus_glaber_female
ENSCJAG00000017668	SND1	99	97.851	ENSHGLG00100012449	SND1	100	97.459	Heterocephalus_glaber_male
ENSCJAG00000017668	SND1	99	83.860	ENSHCOG00000005266	snd1	98	83.893	Hippocampus_comes
ENSCJAG00000017668	SND1	99	83.559	ENSIPUG00000013279	snd1	98	83.519	Ictalurus_punctatus
ENSCJAG00000017668	SND1	100	98.571	ENSSTOG00000002140	SND1	100	98.571	Ictidomys_tridecemlineatus
ENSCJAG00000017668	SND1	100	98.681	ENSJJAG00000009561	Snd1	100	98.681	Jaculus_jaculus
ENSCJAG00000017668	SND1	100	83.882	ENSKMAG00000016997	snd1	98	84.899	Kryptolebias_marmoratus
ENSCJAG00000017668	SND1	100	84.564	ENSLBEG00000013563	snd1	99	83.204	Labrus_bergylta
ENSCJAG00000017668	SND1	99	85.794	ENSLOCG00000015537	snd1	98	85.557	Lepisosteus_oculatus
ENSCJAG00000017668	SND1	100	98.022	ENSLAFG00000009696	SND1	100	98.022	Loxodonta_africana
ENSCJAG00000017668	SND1	100	99.121	ENSMFAG00000038114	SND1	100	99.121	Macaca_fascicularis
ENSCJAG00000017668	SND1	100	99.121	ENSMMUG00000015432	SND1	100	99.121	Macaca_mulatta
ENSCJAG00000017668	SND1	100	99.121	ENSMNEG00000039808	SND1	100	99.121	Macaca_nemestrina
ENSCJAG00000017668	SND1	100	99.011	ENSMLEG00000029040	SND1	100	99.011	Mandrillus_leucophaeus
ENSCJAG00000017668	SND1	99	84.424	ENSMAMG00000011739	snd1	98	84.375	Mastacembelus_armatus
ENSCJAG00000017668	SND1	99	84.086	ENSMZEG00005005681	snd1	99	83.853	Maylandia_zebra
ENSCJAG00000017668	SND1	100	98.901	ENSMICG00000000097	SND1	100	98.901	Microcebus_murinus
ENSCJAG00000017668	SND1	100	97.912	ENSMOCG00000005040	Snd1	100	97.912	Microtus_ochrogaster
ENSCJAG00000017668	SND1	99	84.199	ENSMMOG00000001795	snd1	99	83.982	Mola_mola
ENSCJAG00000017668	SND1	99	96.041	ENSMODG00000015182	SND1	99	95.875	Monodelphis_domestica
ENSCJAG00000017668	SND1	100	83.004	ENSMALG00000012071	snd1	98	83.817	Monopterus_albus
ENSCJAG00000017668	SND1	100	97.582	MGP_CAROLIEiJ_G0028159	Snd1	100	97.582	Mus_caroli
ENSCJAG00000017668	SND1	100	97.363	ENSMUSG00000001424	Snd1	100	97.363	Mus_musculus
ENSCJAG00000017668	SND1	100	97.582	MGP_PahariEiJ_G0021917	Snd1	100	97.808	Mus_pahari
ENSCJAG00000017668	SND1	100	97.582	MGP_SPRETEiJ_G0029159	Snd1	100	97.582	Mus_spretus
ENSCJAG00000017668	SND1	100	98.352	ENSMPUG00000006545	SND1	100	98.352	Mustela_putorius_furo
ENSCJAG00000017668	SND1	99	97.318	ENSMLUG00000017130	SND1	99	97.318	Myotis_lucifugus
ENSCJAG00000017668	SND1	100	97.912	ENSNGAG00000011186	Snd1	100	97.912	Nannospalax_galili
ENSCJAG00000017668	SND1	99	83.973	ENSNBRG00000006681	snd1	99	83.742	Neolamprologus_brichardi
ENSCJAG00000017668	SND1	100	99.011	ENSNLEG00000012263	SND1	100	99.096	Nomascus_leucogenys
ENSCJAG00000017668	SND1	91	100.000	ENSOPRG00000013405	SND1	92	100.000	Ochotona_princeps
ENSCJAG00000017668	SND1	100	98.242	ENSODEG00000011502	SND1	100	98.242	Octodon_degus
ENSCJAG00000017668	SND1	99	83.973	ENSONIG00000011481	snd1	96	83.742	Oreochromis_niloticus
ENSCJAG00000017668	SND1	99	94.683	ENSOANG00000000817	SND1	99	93.757	Ornithorhynchus_anatinus
ENSCJAG00000017668	SND1	100	97.582	ENSOCUG00000001620	SND1	100	97.582	Oryctolagus_cuniculus
ENSCJAG00000017668	SND1	99	83.747	ENSORLG00000015201	snd1	98	83.687	Oryzias_latipes
ENSCJAG00000017668	SND1	99	83.860	ENSORLG00020013991	snd1	98	83.799	Oryzias_latipes_hni
ENSCJAG00000017668	SND1	99	83.860	ENSORLG00015012436	snd1	98	83.799	Oryzias_latipes_hsok
ENSCJAG00000017668	SND1	99	84.199	ENSOMEG00000006406	snd1	98	84.228	Oryzias_melastigma
ENSCJAG00000017668	SND1	100	98.575	ENSOGAG00000013356	SND1	94	98.575	Otolemur_garnettii
ENSCJAG00000017668	SND1	99	96.041	ENSOARG00000002149	SND1	100	96.045	Ovis_aries
ENSCJAG00000017668	SND1	100	99.011	ENSPPAG00000042947	SND1	100	99.011	Pan_paniscus
ENSCJAG00000017668	SND1	100	99.011	ENSPPRG00000004494	SND1	100	99.011	Panthera_pardus
ENSCJAG00000017668	SND1	100	98.901	ENSPTIG00000014214	SND1	100	98.901	Panthera_tigris_altaica
ENSCJAG00000017668	SND1	100	99.011	ENSPTRG00000023911	SND1	100	99.011	Pan_troglodytes
ENSCJAG00000017668	SND1	99	98.983	ENSPANG00000011997	SND1	99	99.095	Papio_anubis
ENSCJAG00000017668	SND1	99	81.859	ENSPKIG00000023494	snd1	98	81.909	Paramormyrops_kingsleyae
ENSCJAG00000017668	SND1	93	82.874	ENSPMGG00000003629	snd1	100	82.874	Periophthalmus_magnuspinnatus
ENSCJAG00000017668	SND1	100	97.802	ENSPEMG00000010240	Snd1	100	97.802	Peromyscus_maniculatus_bairdii
ENSCJAG00000017668	SND1	99	73.333	ENSPMAG00000007915	-	99	73.333	Petromyzon_marinus
ENSCJAG00000017668	SND1	100	96.374	ENSPCIG00000011561	SND1	100	96.374	Phascolarctos_cinereus
ENSCJAG00000017668	SND1	100	83.443	ENSPFOG00000001557	snd1	99	84.316	Poecilia_formosa
ENSCJAG00000017668	SND1	100	83.443	ENSPLAG00000018459	snd1	96	84.316	Poecilia_latipinna
ENSCJAG00000017668	SND1	100	83.882	ENSPMEG00000006803	snd1	99	84.761	Poecilia_mexicana
ENSCJAG00000017668	SND1	100	83.772	ENSPREG00000002189	snd1	99	84.650	Poecilia_reticulata
ENSCJAG00000017668	SND1	93	98.883	ENSPPYG00000017972	SND1	100	98.883	Pongo_abelii
ENSCJAG00000017668	SND1	100	86.484	ENSPCAG00000011305	SND1	99	86.399	Procavia_capensis
ENSCJAG00000017668	SND1	100	98.901	ENSPCOG00000026791	SND1	100	98.901	Propithecus_coquereli
ENSCJAG00000017668	SND1	100	96.923	ENSPVAG00000013945	SND1	100	96.923	Pteropus_vampyrus
ENSCJAG00000017668	SND1	99	84.086	ENSPNYG00000000932	snd1	99	83.853	Pundamilia_nyererei
ENSCJAG00000017668	SND1	99	84.347	ENSPNAG00000001206	snd1	98	84.222	Pygocentrus_nattereri
ENSCJAG00000017668	SND1	99	97.398	ENSRNOG00000031173	Snd1	99	97.247	Rattus_norvegicus
ENSCJAG00000017668	SND1	76	98.185	ENSRBIG00000027782	-	93	99.240	Rhinopithecus_bieti
ENSCJAG00000017668	SND1	100	99.121	ENSRROG00000033020	SND1	100	99.121	Rhinopithecus_roxellana
ENSCJAG00000017668	SND1	100	99.341	ENSSBOG00000032461	SND1	100	99.341	Saimiri_boliviensis_boliviensis
ENSCJAG00000017668	SND1	99	93.326	ENSSHAG00000015359	SND1	100	92.905	Sarcophilus_harrisii
ENSCJAG00000017668	SND1	99	83.333	ENSSFOG00015001103	snd1	98	83.352	Scleropages_formosus
ENSCJAG00000017668	SND1	99	83.634	ENSSMAG00000001932	snd1	93	83.408	Scophthalmus_maximus
ENSCJAG00000017668	SND1	99	84.650	ENSSDUG00000002699	snd1	92	84.427	Seriola_dumerili
ENSCJAG00000017668	SND1	100	76.316	ENSSLDG00000001950	snd1	98	77.086	Seriola_lalandi_dorsalis
ENSCJAG00000017668	SND1	88	99.057	ENSSARG00000004877	SND1	92	99.057	Sorex_araneus
ENSCJAG00000017668	SND1	75	87.543	ENSSPUG00000017586	SND1	96	87.826	Sphenodon_punctatus
ENSCJAG00000017668	SND1	74	86.726	ENSSPAG00000021398	snd1	96	86.736	Stegastes_partitus
ENSCJAG00000017668	SND1	100	98.681	ENSSSCG00000016590	SND1	100	98.681	Sus_scrofa
ENSCJAG00000017668	SND1	99	85.098	ENSTRUG00000014067	snd1	98	83.669	Takifugu_rubripes
ENSCJAG00000017668	SND1	100	83.004	ENSTNIG00000011019	snd1	100	82.327	Tetraodon_nigroviridis
ENSCJAG00000017668	SND1	95	92.925	ENSTBEG00000003999	SND1	100	92.925	Tupaia_belangeri
ENSCJAG00000017668	SND1	100	94.066	ENSTTRG00000006059	SND1	100	94.066	Tursiops_truncatus
ENSCJAG00000017668	SND1	71	89.610	ENSUAMG00000002820	-	86	89.516	Ursus_americanus
ENSCJAG00000017668	SND1	92	99.049	ENSUAMG00000005604	-	93	99.049	Ursus_americanus
ENSCJAG00000017668	SND1	100	98.791	ENSUMAG00000005960	SND1	100	98.791	Ursus_maritimus
ENSCJAG00000017668	SND1	78	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSCJAG00000017668	SND1	100	98.791	ENSVVUG00000007226	SND1	100	98.791	Vulpes_vulpes
ENSCJAG00000017668	SND1	99	84.859	ENSXETG00000023043	snd1	100	84.783	Xenopus_tropicalis
ENSCJAG00000017668	SND1	94	81.354	ENSXCOG00000013629	snd1	99	81.354	Xiphophorus_couchianus
ENSCJAG00000017668	SND1	100	83.991	ENSXMAG00000011469	snd1	99	84.872	Xiphophorus_maculatus