EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000017731 (Gene tree)
Gene ID: 100400781
Gene Symbol: RBM28
Alias: FLJ10377
Full Name: RNA binding motif protein 28
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 39571 bases
Position: chrNTIC01002224.1:114295728-114335298
Accession: 100400781
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000032720	RRM_1	PF00076.22	1.1e-57	1	4
ENSCJAP00000032720	RRM_1	PF00076.22	1.1e-57	2	4
ENSCJAP00000032720	RRM_1	PF00076.22	1.1e-57	3	4
ENSCJAP00000032720	RRM_1	PF00076.22	1.1e-57	4	4
ENSCJAP00000032731	RRM_1	PF00076.22	1.2e-57	1	4
ENSCJAP00000032731	RRM_1	PF00076.22	1.2e-57	2	4
ENSCJAP00000032731	RRM_1	PF00076.22	1.2e-57	3	4
ENSCJAP00000032731	RRM_1	PF00076.22	1.2e-57	4	4
ENSCJAP00000032723	RRM_1	PF00076.22	1.3e-29	1	3
ENSCJAP00000032723	RRM_1	PF00076.22	1.3e-29	2	3
ENSCJAP00000032723	RRM_1	PF00076.22	1.3e-29	3	3
ENSCJAP00000061536	RRM_1	PF00076.22	3.5e-20	1	2
ENSCJAP00000061536	RRM_1	PF00076.22	3.5e-20	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000034584	RBM28-203	1860	-	ENSCJAP00000032723	619 (aa)	-	F7H0Z0
ENSCJAT00000066529	RBM28-204	5680	-	ENSCJAP00000061536	533 (aa)	-	A0A2R8ML89
ENSCJAT00000034581	RBM28-202	2256	-	ENSCJAP00000032720	751 (aa)	-	F7H100
ENSCJAT00000034594	RBM28-201	2283	XM_009003118	ENSCJAP00000032731	760 (aa)	XP_002752086	F7GVU1

Gene Model

Click here to download ENSCJAG00000017731's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000017731's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000017731	RBM28	100	92.773	ENSG00000106344	RBM28	100	100.000	Homo_sapiens
ENSCJAG00000017731	RBM28	81	54.195	ENSAPOG00000015512	rbm28	90	61.538	Acanthochromis_polyacanthus
ENSCJAG00000017731	RBM28	100	89.583	ENSAMEG00000004776	RBM28	92	89.583	Ailuropoda_melanoleuca
ENSCJAG00000017731	RBM28	78	55.000	ENSACIG00000023153	rbm28	100	51.566	Amphilophus_citrinellus
ENSCJAG00000017731	RBM28	76	62.500	ENSAOCG00000000462	rbm28	90	62.500	Amphiprion_ocellaris
ENSCJAG00000017731	RBM28	76	62.500	ENSAPEG00000012996	rbm28	90	62.500	Amphiprion_percula
ENSCJAG00000017731	RBM28	77	65.000	ENSATEG00000001672	rbm28	72	65.000	Anabas_testudineus
ENSCJAG00000017731	RBM28	100	96.842	ENSANAG00000033922	RBM28	100	96.842	Aotus_nancymaae
ENSCJAG00000017731	RBM28	100	52.632	ENSACLG00000025024	rbm28	100	50.383	Astatotilapia_calliptera
ENSCJAG00000017731	RBM28	82	56.849	ENSAMXG00000000763	rbm28	99	58.087	Astyanax_mexicanus
ENSCJAG00000017731	RBM28	100	82.021	ENSBTAG00000017001	RBM28	100	100.000	Bos_taurus
ENSCJAG00000017731	RBM28	100	83.071	ENSCAFG00000001667	RBM28	100	82.677	Canis_familiaris
ENSCJAG00000017731	RBM28	100	83.071	ENSCAFG00020021648	RBM28	100	82.677	Canis_lupus_dingo
ENSCJAG00000017731	RBM28	100	82.415	ENSCHIG00000014146	RBM28	100	83.071	Capra_hircus
ENSCJAG00000017731	RBM28	100	84.748	ENSTSYG00000002892	RBM28	100	95.000	Carlito_syrichta
ENSCJAG00000017731	RBM28	84	61.285	ENSCAPG00000013218	RBM28	100	61.442	Cavia_aperea
ENSCJAG00000017731	RBM28	100	82.152	ENSCPOG00000006253	RBM28	100	82.940	Cavia_porcellus
ENSCJAG00000017731	RBM28	100	96.842	ENSCCAG00000035105	RBM28	100	96.842	Cebus_capucinus
ENSCJAG00000017731	RBM28	100	91.196	ENSCATG00000040497	RBM28	100	97.500	Cercocebus_atys
ENSCJAG00000017731	RBM28	100	78.215	ENSCLAG00000003707	RBM28	100	79.396	Chinchilla_lanigera
ENSCJAG00000017731	RBM28	100	91.853	ENSCSAG00000010161	RBM28	100	90.802	Chlorocebus_sabaeus
ENSCJAG00000017731	RBM28	57	89.516	ENSCHOG00000001994	-	63	89.516	Choloepus_hoffmanni
ENSCJAG00000017731	RBM28	78	60.334	ENSCPBG00000018088	RBM28	89	60.000	Chrysemys_picta_bellii
ENSCJAG00000017731	RBM28	84	40.612	ENSCING00000009238	-	57	40.777	Ciona_intestinalis
ENSCJAG00000017731	RBM28	63	42.319	ENSCSAVG00000007149	-	94	42.105	Ciona_savignyi
ENSCJAG00000017731	RBM28	91	92.015	ENSCANG00000038397	RBM28	100	100.000	Colobus_angolensis_palliatus
ENSCJAG00000017731	RBM28	93	81.489	ENSCGRG00001021278	Rbm28	100	77.877	Cricetulus_griseus_chok1gshd
ENSCJAG00000017731	RBM28	100	80.079	ENSCGRG00000005098	Rbm28	100	80.210	Cricetulus_griseus_crigri
ENSCJAG00000017731	RBM28	100	54.545	ENSCSEG00000004212	rbm28	100	48.346	Cynoglossus_semilaevis
ENSCJAG00000017731	RBM28	85	54.324	ENSCVAG00000010493	rbm28	90	65.000	Cyprinodon_variegatus
ENSCJAG00000017731	RBM28	100	56.071	ENSDARG00000025332	rbm28	100	52.475	Danio_rerio
ENSCJAG00000017731	RBM28	100	84.514	ENSDNOG00000001124	RBM28	100	84.514	Dasypus_novemcinctus
ENSCJAG00000017731	RBM28	92	81.452	ENSDORG00000004184	Rbm28	97	81.653	Dipodomys_ordii
ENSCJAG00000017731	RBM28	65	38.353	FBgn0260456	CG4806	62	43.620	Drosophila_melanogaster
ENSCJAG00000017731	RBM28	100	69.752	ENSETEG00000007130	RBM28	99	69.622	Echinops_telfairi
ENSCJAG00000017731	RBM28	99	41.384	ENSEBUG00000004419	rbm28	98	41.161	Eptatretus_burgeri
ENSCJAG00000017731	RBM28	100	83.442	ENSEASG00005008528	RBM28	100	83.703	Equus_asinus_asinus
ENSCJAG00000017731	RBM28	100	82.552	ENSECAG00000007745	RBM28	100	82.943	Equus_caballus
ENSCJAG00000017731	RBM28	100	74.934	ENSEEUG00000002389	RBM28	100	74.934	Erinaceus_europaeus
ENSCJAG00000017731	RBM28	84	62.500	ENSELUG00000020602	rbm28	100	51.064	Esox_lucius
ENSCJAG00000017731	RBM28	100	82.546	ENSFCAG00000000946	RBM28	100	100.000	Felis_catus
ENSCJAG00000017731	RBM28	100	83.990	ENSFDAG00000010169	RBM28	100	84.121	Fukomys_damarensis
ENSCJAG00000017731	RBM28	81	51.732	ENSGMOG00000007091	rbm28	99	47.285	Gadus_morhua
ENSCJAG00000017731	RBM28	82	55.257	ENSGAFG00000004802	rbm28	97	55.257	Gambusia_affinis
ENSCJAG00000017731	RBM28	75	65.714	ENSGACG00000012612	rbm28	72	65.714	Gasterosteus_aculeatus
ENSCJAG00000017731	RBM28	82	71.500	ENSGAGG00000008873	RBM28	85	80.220	Gopherus_agassizii
ENSCJAG00000017731	RBM28	95	93.267	ENSGGOG00000004644	RBM28	97	91.274	Gorilla_gorilla
ENSCJAG00000017731	RBM28	91	52.063	ENSHBUG00000009611	rbm28	94	51.852	Haplochromis_burtoni
ENSCJAG00000017731	RBM28	100	84.514	ENSHGLG00000005409	RBM28	100	83.596	Heterocephalus_glaber_female
ENSCJAG00000017731	RBM28	100	83.858	ENSHGLG00100016458	RBM28	100	82.546	Heterocephalus_glaber_male
ENSCJAG00000017731	RBM28	99	42.970	ENSHCOG00000010597	rbm28	92	47.917	Hippocampus_comes
ENSCJAG00000017731	RBM28	91	44.215	ENSIPUG00000007103	rbm28	95	46.042	Ictalurus_punctatus
ENSCJAG00000017731	RBM28	100	84.595	ENSSTOG00000002169	RBM28	100	84.595	Ictidomys_tridecemlineatus
ENSCJAG00000017731	RBM28	100	75.425	ENSJJAG00000022400	Rbm28	100	75.556	Jaculus_jaculus
ENSCJAG00000017731	RBM28	79	67.500	ENSKMAG00000013348	rbm28	84	67.500	Kryptolebias_marmoratus
ENSCJAG00000017731	RBM28	76	65.000	ENSLBEG00000012998	rbm28	100	49.427	Labrus_bergylta
ENSCJAG00000017731	RBM28	68	76.667	ENSLACG00000010485	-	100	57.473	Latimeria_chalumnae
ENSCJAG00000017731	RBM28	100	58.447	ENSLOCG00000015541	rbm28	80	64.433	Lepisosteus_oculatus
ENSCJAG00000017731	RBM28	100	81.890	ENSLAFG00000010717	RBM28	100	81.890	Loxodonta_africana
ENSCJAG00000017731	RBM28	100	91.590	ENSMFAG00000031036	RBM28	100	97.500	Macaca_fascicularis
ENSCJAG00000017731	RBM28	100	91.076	ENSMMUG00000007250	RBM28	100	97.500	Macaca_mulatta
ENSCJAG00000017731	RBM28	100	90.209	ENSMNEG00000036970	RBM28	100	97.500	Macaca_nemestrina
ENSCJAG00000017731	RBM28	84	92.128	ENSMLEG00000037717	RBM28	100	91.064	Mandrillus_leucophaeus
ENSCJAG00000017731	RBM28	100	62.500	ENSMAMG00000008525	rbm28	100	49.936	Mastacembelus_armatus
ENSCJAG00000017731	RBM28	93	49.799	ENSMZEG00005019625	rbm28	100	49.521	Maylandia_zebra
ENSCJAG00000017731	RBM28	93	79.074	ENSMAUG00000002263	Rbm28	100	77.249	Mesocricetus_auratus
ENSCJAG00000017731	RBM28	94	87.103	ENSMICG00000000107	RBM28	100	84.072	Microcebus_murinus
ENSCJAG00000017731	RBM28	100	79.712	ENSMOCG00000014615	Rbm28	100	79.188	Microtus_ochrogaster
ENSCJAG00000017731	RBM28	81	52.995	ENSMMOG00000008600	rbm28	99	50.000	Mola_mola
ENSCJAG00000017731	RBM28	100	87.500	ENSMODG00000015151	RBM28	100	73.117	Monodelphis_domestica
ENSCJAG00000017731	RBM28	82	51.778	ENSMALG00000006419	rbm28	100	48.923	Monopterus_albus
ENSCJAG00000017731	RBM28	100	79.817	MGP_CAROLIEiJ_G0028162	Rbm28	100	79.817	Mus_caroli
ENSCJAG00000017731	RBM28	100	79.554	ENSMUSG00000029701	Rbm28	100	79.423	Mus_musculus
ENSCJAG00000017731	RBM28	100	80.079	MGP_PahariEiJ_G0021920	Rbm28	100	79.948	Mus_pahari
ENSCJAG00000017731	RBM28	100	79.817	MGP_SPRETEiJ_G0029162	Rbm28	100	79.685	Mus_spretus
ENSCJAG00000017731	RBM28	100	83.770	ENSMPUG00000006511	RBM28	100	82.461	Mustela_putorius_furo
ENSCJAG00000017731	RBM28	100	83.990	ENSMLUG00000002186	RBM28	100	83.990	Myotis_lucifugus
ENSCJAG00000017731	RBM28	100	100.000	ENSNGAG00000006480	-	81	100.000	Nannospalax_galili
ENSCJAG00000017731	RBM28	100	92.500	ENSNGAG00000017946	-	100	76.903	Nannospalax_galili
ENSCJAG00000017731	RBM28	100	90.314	ENSNLEG00000012307	RBM28	100	100.000	Nomascus_leucogenys
ENSCJAG00000017731	RBM28	82	86.875	ENSMEUG00000009611	RBM28	91	86.875	Notamacropus_eugenii
ENSCJAG00000017731	RBM28	90	76.660	ENSOPRG00000015140	RBM28	90	76.281	Ochotona_princeps
ENSCJAG00000017731	RBM28	80	86.902	ENSODEG00000013217	-	87	86.902	Octodon_degus
ENSCJAG00000017731	RBM28	100	77.822	ENSODEG00000003213	-	100	77.559	Octodon_degus
ENSCJAG00000017731	RBM28	82	54.204	ENSONIG00000014924	rbm28	100	50.254	Oreochromis_niloticus
ENSCJAG00000017731	RBM28	100	85.000	ENSOANG00000000815	-	68	61.850	Ornithorhynchus_anatinus
ENSCJAG00000017731	RBM28	100	81.486	ENSOCUG00000003009	RBM28	100	81.486	Oryctolagus_cuniculus
ENSCJAG00000017731	RBM28	77	67.500	ENSORLG00000009636	rbm28	70	67.500	Oryzias_latipes
ENSCJAG00000017731	RBM28	76	72.222	ENSORLG00020002123	rbm28	71	67.500	Oryzias_latipes_hni
ENSCJAG00000017731	RBM28	99	55.983	ENSORLG00015015030	rbm28	99	55.983	Oryzias_latipes_hsok
ENSCJAG00000017731	RBM28	77	67.500	ENSOMEG00000007801	rbm28	100	49.504	Oryzias_melastigma
ENSCJAG00000017731	RBM28	100	82.240	ENSOGAG00000006011	RBM28	100	92.500	Otolemur_garnettii
ENSCJAG00000017731	RBM28	100	82.484	ENSOARG00000002547	RBM28	100	82.484	Ovis_aries
ENSCJAG00000017731	RBM28	100	92.257	ENSPPAG00000041730	RBM28	100	100.000	Pan_paniscus
ENSCJAG00000017731	RBM28	100	82.438	ENSPPRG00000004420	RBM28	100	100.000	Panthera_pardus
ENSCJAG00000017731	RBM28	100	82.546	ENSPTIG00000008550	RBM28	100	100.000	Panthera_tigris_altaica
ENSCJAG00000017731	RBM28	100	92.520	ENSPTRG00000019659	RBM28	100	100.000	Pan_troglodytes
ENSCJAG00000017731	RBM28	100	90.814	ENSPANG00000022295	RBM28	100	97.500	Papio_anubis
ENSCJAG00000017731	RBM28	99	57.500	ENSPKIG00000023453	rbm28	88	57.500	Paramormyrops_kingsleyae
ENSCJAG00000017731	RBM28	89	52.830	ENSPMGG00000012840	rbm28	100	59.113	Periophthalmus_magnuspinnatus
ENSCJAG00000017731	RBM28	100	77.851	ENSPEMG00000020673	Rbm28	100	77.588	Peromyscus_maniculatus_bairdii
ENSCJAG00000017731	RBM28	67	45.052	ENSPMAG00000002948	-	99	46.113	Petromyzon_marinus
ENSCJAG00000017731	RBM28	100	87.500	ENSPCIG00000012810	RBM28	100	71.521	Phascolarctos_cinereus
ENSCJAG00000017731	RBM28	77	65.000	ENSPFOG00000018209	rbm28	100	51.034	Poecilia_formosa
ENSCJAG00000017731	RBM28	79	65.000	ENSPLAG00000016078	rbm28	96	50.453	Poecilia_latipinna
ENSCJAG00000017731	RBM28	80	65.000	ENSPMEG00000004292	rbm28	100	51.097	Poecilia_mexicana
ENSCJAG00000017731	RBM28	75	65.000	ENSPREG00000014287	rbm28	98	49.737	Poecilia_reticulata
ENSCJAG00000017731	RBM28	100	93.035	ENSPPYG00000017975	RBM28	100	92.116	Pongo_abelii
ENSCJAG00000017731	RBM28	74	75.493	ENSPCAG00000008223	RBM28	83	75.556	Procavia_capensis
ENSCJAG00000017731	RBM28	100	85.286	ENSPCOG00000016797	RBM28	100	100.000	Propithecus_coquereli
ENSCJAG00000017731	RBM28	77	91.628	ENSPVAG00000005443	RBM28	76	91.628	Pteropus_vampyrus
ENSCJAG00000017731	RBM28	100	50.251	ENSPNYG00000014003	rbm28	100	50.255	Pundamilia_nyererei
ENSCJAG00000017731	RBM28	100	78.375	ENSRNOG00000005468	Rbm28	100	78.375	Rattus_norvegicus
ENSCJAG00000017731	RBM28	100	91.481	ENSRBIG00000033990	RBM28	100	100.000	Rhinopithecus_bieti
ENSCJAG00000017731	RBM28	100	90.551	ENSRROG00000040747	RBM28	100	100.000	Rhinopithecus_roxellana
ENSCJAG00000017731	RBM28	91	91.864	ENSSBOG00000012308	RBM28	100	93.701	Saimiri_boliviensis_boliviensis
ENSCJAG00000017731	RBM28	93	70.080	ENSSHAG00000017017	RBM28	99	66.847	Sarcophilus_harrisii
ENSCJAG00000017731	RBM28	85	58.202	ENSSFOG00015001231	rbm28	91	62.500	Scleropages_formosus
ENSCJAG00000017731	RBM28	81	52.174	ENSSMAG00000003885	rbm28	99	50.207	Scophthalmus_maximus
ENSCJAG00000017731	RBM28	58	54.767	ENSSDUG00000014270	rbm28	96	52.200	Seriola_dumerili
ENSCJAG00000017731	RBM28	82	54.464	ENSSLDG00000020099	rbm28	100	50.387	Seriola_lalandi_dorsalis
ENSCJAG00000017731	RBM28	77	84.962	ENSSARG00000008303	RBM28	81	84.962	Sorex_araneus
ENSCJAG00000017731	RBM28	81	63.326	ENSSPUG00000000838	RBM28	79	73.529	Sphenodon_punctatus
ENSCJAG00000017731	RBM28	81	52.993	ENSSPAG00000023305	rbm28	100	48.079	Stegastes_partitus
ENSCJAG00000017731	RBM28	100	83.596	ENSSSCG00000031847	RBM28	100	83.202	Sus_scrofa
ENSCJAG00000017731	RBM28	82	51.868	ENSTRUG00000013311	rbm28	90	65.000	Takifugu_rubripes
ENSCJAG00000017731	RBM28	99	52.010	ENSTNIG00000017962	rbm28	99	51.365	Tetraodon_nigroviridis
ENSCJAG00000017731	RBM28	86	87.278	ENSTBEG00000012749	RBM28	86	87.278	Tupaia_belangeri
ENSCJAG00000017731	RBM28	100	100.000	ENSTTRG00000013647	RBM28	82	100.000	Tursiops_truncatus
ENSCJAG00000017731	RBM28	100	75.591	ENSUAMG00000006949	RBM28	100	75.722	Ursus_americanus
ENSCJAG00000017731	RBM28	100	83.596	ENSUMAG00000005997	RBM28	100	83.202	Ursus_maritimus
ENSCJAG00000017731	RBM28	95	75.889	ENSVPAG00000008304	RBM28	87	74.251	Vicugna_pacos
ENSCJAG00000017731	RBM28	100	82.808	ENSVVUG00000007270	RBM28	100	82.415	Vulpes_vulpes
ENSCJAG00000017731	RBM28	99	67.500	ENSXETG00000009271	rbm28	99	54.592	Xenopus_tropicalis
ENSCJAG00000017731	RBM28	82	52.164	ENSXCOG00000020357	rbm28	99	50.524	Xiphophorus_couchianus
ENSCJAG00000017731	RBM28	79	67.500	ENSXMAG00000004415	rbm28	90	67.500	Xiphophorus_maculatus