EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000017856 (Gene tree)
Gene ID: 100391764
Gene Symbol: PRPF4
Alias: HPRP4|HPRP4P|PRP4|Prp4p|SNRNP60
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 16991 bases
Position: chrNTIC01000001.1:55315770-55332760
Accession: 100391764
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000033006	PRP4	PF08799.11	6.7e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000034879	PRPF4-202	1569	-	ENSCJAP00000033006	522 (aa)	XP_008999760	F6PW72
ENSCJAT00000066823	PRPF4-201	762	-	ENSCJAP00000057260	253 (aa)	-	A0A2R8MCC0

Gene Model

Click here to download ENSCJAG00000017856's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000017856's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000017856	PRPF4	56	30.000	ENSCJAG00000005972	POC1A	81	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000017856	PRPF4	100	99.617	ENSG00000136875	PRPF4	100	99.617	Homo_sapiens
ENSCJAG00000017856	PRPF4	96	77.406	ENSAPOG00000014132	prpf4	98	77.406	Acanthochromis_polyacanthus
ENSCJAG00000017856	PRPF4	100	99.617	ENSAMEG00000013048	PRPF4	98	99.617	Ailuropoda_melanoleuca
ENSCJAG00000017856	PRPF4	96	77.183	ENSACIG00000005579	prpf4	99	77.183	Amphilophus_citrinellus
ENSCJAG00000017856	PRPF4	96	76.832	ENSAOCG00000005457	prpf4	99	76.832	Amphiprion_ocellaris
ENSCJAG00000017856	PRPF4	96	76.634	ENSAPEG00000000776	prpf4	99	76.634	Amphiprion_percula
ENSCJAG00000017856	PRPF4	96	76.587	ENSATEG00000023013	prpf4	99	76.587	Anabas_testudineus
ENSCJAG00000017856	PRPF4	98	90.448	ENSAPLG00000006534	PRPF4	96	90.448	Anas_platyrhynchos
ENSCJAG00000017856	PRPF4	100	89.695	ENSACAG00000015110	PRPF4	100	89.695	Anolis_carolinensis
ENSCJAG00000017856	PRPF4	100	99.808	ENSANAG00000022464	PRPF4	96	99.808	Aotus_nancymaae
ENSCJAG00000017856	PRPF4	96	76.984	ENSACLG00000019031	prpf4	99	76.984	Astatotilapia_calliptera
ENSCJAG00000017856	PRPF4	97	62.380	ENSAMXG00000006756	prpf4	99	73.465	Astyanax_mexicanus
ENSCJAG00000017856	PRPF4	100	98.851	ENSBTAG00000004571	PRPF4	100	98.851	Bos_taurus
ENSCJAG00000017856	PRPF4	90	44.000	WBGene00007972	prp-4	96	44.000	Caenorhabditis_elegans
ENSCJAG00000017856	PRPF4	100	99.617	ENSCAFG00000003224	PRPF4	97	99.617	Canis_familiaris
ENSCJAG00000017856	PRPF4	100	99.617	ENSCAFG00020022637	PRPF4	100	99.617	Canis_lupus_dingo
ENSCJAG00000017856	PRPF4	100	99.425	ENSCHIG00000024648	-	100	99.425	Capra_hircus
ENSCJAG00000017856	PRPF4	100	99.425	ENSTSYG00000010366	PRPF4	100	99.425	Carlito_syrichta
ENSCJAG00000017856	PRPF4	88	88.544	ENSCAPG00000008935	PRPF4	97	88.544	Cavia_aperea
ENSCJAG00000017856	PRPF4	100	92.529	ENSCPOG00000014729	-	100	92.529	Cavia_porcellus
ENSCJAG00000017856	PRPF4	100	99.042	ENSCPOG00000010747	-	100	99.042	Cavia_porcellus
ENSCJAG00000017856	PRPF4	100	99.617	ENSCCAG00000028990	PRPF4	100	99.617	Cebus_capucinus
ENSCJAG00000017856	PRPF4	100	99.425	ENSCATG00000021552	PRPF4	100	99.425	Cercocebus_atys
ENSCJAG00000017856	PRPF4	100	99.234	ENSCLAG00000013448	PRPF4	100	99.234	Chinchilla_lanigera
ENSCJAG00000017856	PRPF4	87	95.796	ENSCHOG00000007233	PRPF4	100	95.796	Choloepus_hoffmanni
ENSCJAG00000017856	PRPF4	99	91.296	ENSCPBG00000019136	PRPF4	74	91.296	Chrysemys_picta_bellii
ENSCJAG00000017856	PRPF4	96	59.252	ENSCING00000001299	-	97	58.614	Ciona_intestinalis
ENSCJAG00000017856	PRPF4	96	57.540	ENSCSAVG00000009178	-	99	58.874	Ciona_savignyi
ENSCJAG00000017856	PRPF4	100	99.617	ENSCANG00000003246	PRPF4	100	99.617	Colobus_angolensis_palliatus
ENSCJAG00000017856	PRPF4	100	99.425	ENSCGRG00001016992	Prpf4	100	99.425	Cricetulus_griseus_chok1gshd
ENSCJAG00000017856	PRPF4	100	99.425	ENSCGRG00000017560	Prpf4	100	99.425	Cricetulus_griseus_crigri
ENSCJAG00000017856	PRPF4	97	75.842	ENSCSEG00000020451	prpf4	99	75.842	Cynoglossus_semilaevis
ENSCJAG00000017856	PRPF4	97	79.802	ENSDARG00000067639	prpf4	99	79.802	Danio_rerio
ENSCJAG00000017856	PRPF4	100	98.467	ENSDNOG00000013203	PRPF4	100	98.467	Dasypus_novemcinctus
ENSCJAG00000017856	PRPF4	100	99.425	ENSDORG00000026275	Prpf4	100	99.425	Dipodomys_ordii
ENSCJAG00000017856	PRPF4	87	56.674	FBgn0036733	U4-U6-60K	99	50.547	Drosophila_melanogaster
ENSCJAG00000017856	PRPF4	100	97.706	ENSETEG00000020389	PRPF4	100	97.706	Echinops_telfairi
ENSCJAG00000017856	PRPF4	95	73.041	ENSEBUG00000015229	prpf4	86	73.502	Eptatretus_burgeri
ENSCJAG00000017856	PRPF4	100	99.808	ENSEASG00005022678	PRPF4	100	99.808	Equus_asinus_asinus
ENSCJAG00000017856	PRPF4	100	99.808	ENSECAG00000007072	PRPF4	100	99.808	Equus_caballus
ENSCJAG00000017856	PRPF4	100	78.821	ENSEEUG00000007480	PRPF4	100	78.821	Erinaceus_europaeus
ENSCJAG00000017856	PRPF4	97	80.792	ENSELUG00000007510	prpf4	99	80.792	Esox_lucius
ENSCJAG00000017856	PRPF4	100	100.000	ENSFCAG00000005514	PRPF4	100	100.000	Felis_catus
ENSCJAG00000017856	PRPF4	98	87.751	ENSFALG00000005423	PRPF4	90	85.591	Ficedula_albicollis
ENSCJAG00000017856	PRPF4	100	99.042	ENSFDAG00000005839	PRPF4	100	99.042	Fukomys_damarensis
ENSCJAG00000017856	PRPF4	96	76.190	ENSFHEG00000001300	prpf4	99	76.190	Fundulus_heteroclitus
ENSCJAG00000017856	PRPF4	98	90.215	ENSGALG00000008857	PRPF4	96	89.864	Gallus_gallus
ENSCJAG00000017856	PRPF4	65	70.588	ENSGAFG00000012164	prpf4	70	70.588	Gambusia_affinis
ENSCJAG00000017856	PRPF4	96	69.643	ENSGACG00000015476	prpf4	99	68.849	Gasterosteus_aculeatus
ENSCJAG00000017856	PRPF4	99	91.103	ENSGAGG00000025029	PRPF4	96	91.103	Gopherus_agassizii
ENSCJAG00000017856	PRPF4	100	99.425	ENSGGOG00000006943	PRPF4	100	99.425	Gorilla_gorilla
ENSCJAG00000017856	PRPF4	96	76.786	ENSHBUG00000000562	prpf4	99	76.786	Haplochromis_burtoni
ENSCJAG00000017856	PRPF4	100	80.460	ENSHGLG00000003838	-	100	80.460	Heterocephalus_glaber_female
ENSCJAG00000017856	PRPF4	100	81.870	ENSHGLG00000016628	-	100	82.634	Heterocephalus_glaber_female
ENSCJAG00000017856	PRPF4	100	99.042	ENSHGLG00000015191	PRPF4	100	99.042	Heterocephalus_glaber_female
ENSCJAG00000017856	PRPF4	100	80.460	ENSHGLG00100005571	-	100	80.460	Heterocephalus_glaber_male
ENSCJAG00000017856	PRPF4	97	78.812	ENSIPUG00000017956	PRPF4	99	78.812	Ictalurus_punctatus
ENSCJAG00000017856	PRPF4	100	99.234	ENSSTOG00000027833	PRPF4	100	99.234	Ictidomys_tridecemlineatus
ENSCJAG00000017856	PRPF4	100	99.425	ENSJJAG00000008838	Prpf4	100	99.425	Jaculus_jaculus
ENSCJAG00000017856	PRPF4	96	76.190	ENSKMAG00000013236	prpf4	99	76.190	Kryptolebias_marmoratus
ENSCJAG00000017856	PRPF4	96	75.896	ENSLBEG00000020611	prpf4	99	75.896	Labrus_bergylta
ENSCJAG00000017856	PRPF4	98	81.055	ENSLACG00000016317	PRPF4	98	81.055	Latimeria_chalumnae
ENSCJAG00000017856	PRPF4	97	81.782	ENSLOCG00000000581	prpf4	99	81.782	Lepisosteus_oculatus
ENSCJAG00000017856	PRPF4	100	98.467	ENSLAFG00000018225	PRPF4	100	98.467	Loxodonta_africana
ENSCJAG00000017856	PRPF4	100	99.234	ENSMFAG00000039397	PRPF4	100	99.234	Macaca_fascicularis
ENSCJAG00000017856	PRPF4	100	99.425	ENSMMUG00000005844	PRPF4	100	99.425	Macaca_mulatta
ENSCJAG00000017856	PRPF4	100	87.931	ENSMNEG00000033737	PRPF4	100	88.889	Macaca_nemestrina
ENSCJAG00000017856	PRPF4	100	99.425	ENSMLEG00000040284	PRPF4	100	99.425	Mandrillus_leucophaeus
ENSCJAG00000017856	PRPF4	97	76.134	ENSMAMG00000020141	prpf4	99	76.134	Mastacembelus_armatus
ENSCJAG00000017856	PRPF4	96	76.984	ENSMZEG00005023205	prpf4	99	76.984	Maylandia_zebra
ENSCJAG00000017856	PRPF4	99	88.484	ENSMGAG00000001796	PRPF4	97	88.484	Meleagris_gallopavo
ENSCJAG00000017856	PRPF4	100	98.851	ENSMAUG00000018022	Prpf4	100	98.851	Mesocricetus_auratus
ENSCJAG00000017856	PRPF4	100	98.851	ENSMICG00000015022	PRPF4	100	98.851	Microcebus_murinus
ENSCJAG00000017856	PRPF4	100	98.851	ENSMOCG00000018273	Prpf4	100	98.851	Microtus_ochrogaster
ENSCJAG00000017856	PRPF4	97	74.851	ENSMMOG00000021177	prpf4	99	74.851	Mola_mola
ENSCJAG00000017856	PRPF4	100	94.837	ENSMODG00000025096	-	97	94.837	Monodelphis_domestica
ENSCJAG00000017856	PRPF4	100	94.847	ENSMODG00000004444	-	100	94.847	Monodelphis_domestica
ENSCJAG00000017856	PRPF4	96	76.587	ENSMALG00000013624	prpf4	99	76.587	Monopterus_albus
ENSCJAG00000017856	PRPF4	100	99.234	MGP_CAROLIEiJ_G0026078	Prpf4	100	99.234	Mus_caroli
ENSCJAG00000017856	PRPF4	100	99.234	ENSMUSG00000066148	Prpf4	100	99.234	Mus_musculus
ENSCJAG00000017856	PRPF4	100	99.042	MGP_PahariEiJ_G0028413	Prpf4	100	99.042	Mus_pahari
ENSCJAG00000017856	PRPF4	100	99.234	MGP_SPRETEiJ_G0027042	Prpf4	100	99.234	Mus_spretus
ENSCJAG00000017856	PRPF4	100	99.617	ENSMPUG00000007883	PRPF4	100	99.617	Mustela_putorius_furo
ENSCJAG00000017856	PRPF4	100	97.318	ENSMLUG00000008626	-	97	97.318	Myotis_lucifugus
ENSCJAG00000017856	PRPF4	100	99.234	ENSMLUG00000015309	-	97	99.234	Myotis_lucifugus
ENSCJAG00000017856	PRPF4	100	94.061	ENSNGAG00000000468	Prpf4	100	94.061	Nannospalax_galili
ENSCJAG00000017856	PRPF4	96	77.183	ENSNBRG00000007972	prpf4	99	77.183	Neolamprologus_brichardi
ENSCJAG00000017856	PRPF4	100	99.808	ENSNLEG00000016647	PRPF4	100	99.808	Nomascus_leucogenys
ENSCJAG00000017856	PRPF4	98	95.499	ENSMEUG00000013256	PRPF4	100	95.525	Notamacropus_eugenii
ENSCJAG00000017856	PRPF4	100	99.234	ENSOPRG00000005302	PRPF4	100	99.234	Ochotona_princeps
ENSCJAG00000017856	PRPF4	100	99.425	ENSODEG00000018147	PRPF4	100	99.425	Octodon_degus
ENSCJAG00000017856	PRPF4	99	75.096	ENSONIG00000012671	prpf4	99	76.984	Oreochromis_niloticus
ENSCJAG00000017856	PRPF4	100	99.617	ENSOCUG00000005046	PRPF4	100	99.617	Oryctolagus_cuniculus
ENSCJAG00000017856	PRPF4	96	74.900	ENSORLG00000019641	prpf4	99	74.900	Oryzias_latipes
ENSCJAG00000017856	PRPF4	96	74.900	ENSORLG00020019438	prpf4	99	74.900	Oryzias_latipes_hni
ENSCJAG00000017856	PRPF4	96	74.737	ENSOMEG00000020941	prpf4	99	74.737	Oryzias_melastigma
ENSCJAG00000017856	PRPF4	100	94.444	ENSOGAG00000007802	PRPF4	98	94.444	Otolemur_garnettii
ENSCJAG00000017856	PRPF4	100	99.234	ENSOARG00000006319	PRPF4	97	99.234	Ovis_aries
ENSCJAG00000017856	PRPF4	100	99.425	ENSPPAG00000041797	PRPF4	100	99.425	Pan_paniscus
ENSCJAG00000017856	PRPF4	100	99.808	ENSPPRG00000014360	PRPF4	100	99.808	Panthera_pardus
ENSCJAG00000017856	PRPF4	100	99.808	ENSPTIG00000009574	PRPF4	100	99.808	Panthera_tigris_altaica
ENSCJAG00000017856	PRPF4	100	99.617	ENSPTRG00000021274	PRPF4	100	99.617	Pan_troglodytes
ENSCJAG00000017856	PRPF4	100	99.234	ENSPANG00000025776	PRPF4	96	99.234	Papio_anubis
ENSCJAG00000017856	PRPF4	97	81.188	ENSPKIG00000017259	prpf4	99	81.188	Paramormyrops_kingsleyae
ENSCJAG00000017856	PRPF4	98	91.051	ENSPSIG00000010713	PRPF4	90	91.051	Pelodiscus_sinensis
ENSCJAG00000017856	PRPF4	99	58.532	ENSPMGG00000000997	prpf4	99	58.532	Periophthalmus_magnuspinnatus
ENSCJAG00000017856	PRPF4	100	99.425	ENSPEMG00000024115	Prpf4	100	99.425	Peromyscus_maniculatus_bairdii
ENSCJAG00000017856	PRPF4	98	95.499	ENSPCIG00000003821	PRPF4	99	95.525	Phascolarctos_cinereus
ENSCJAG00000017856	PRPF4	96	70.020	ENSPFOG00000013524	prpf4	98	72.981	Poecilia_formosa
ENSCJAG00000017856	PRPF4	84	69.822	ENSPLAG00000011620	prpf4	96	72.050	Poecilia_latipinna
ENSCJAG00000017856	PRPF4	91	74.096	ENSPMEG00000006813	prpf4	98	74.096	Poecilia_mexicana
ENSCJAG00000017856	PRPF4	98	99.416	ENSPCAG00000002561	PRPF4	100	99.416	Procavia_capensis
ENSCJAG00000017856	PRPF4	100	99.234	ENSPCOG00000011975	PRPF4	100	99.234	Propithecus_coquereli
ENSCJAG00000017856	PRPF4	100	95.977	ENSPVAG00000004708	PRPF4	100	95.977	Pteropus_vampyrus
ENSCJAG00000017856	PRPF4	96	76.984	ENSPNYG00000008013	prpf4	99	76.984	Pundamilia_nyererei
ENSCJAG00000017856	PRPF4	97	80.396	ENSPNAG00000000697	prpf4	99	80.396	Pygocentrus_nattereri
ENSCJAG00000017856	PRPF4	100	99.042	ENSRNOG00000014777	Prpf4	100	99.042	Rattus_norvegicus
ENSCJAG00000017856	PRPF4	100	99.617	ENSRBIG00000040221	PRPF4	100	99.617	Rhinopithecus_bieti
ENSCJAG00000017856	PRPF4	100	99.617	ENSRROG00000040240	PRPF4	100	99.617	Rhinopithecus_roxellana
ENSCJAG00000017856	PRPF4	100	95.420	ENSSHAG00000017658	PRPF4	100	95.420	Sarcophilus_harrisii
ENSCJAG00000017856	PRPF4	97	81.980	ENSSFOG00015008963	prpf4	99	81.980	Scleropages_formosus
ENSCJAG00000017856	PRPF4	96	75.595	ENSSMAG00000008889	prpf4	99	75.595	Scophthalmus_maximus
ENSCJAG00000017856	PRPF4	96	73.506	ENSSDUG00000022083	prpf4	98	73.705	Seriola_dumerili
ENSCJAG00000017856	PRPF4	96	73.705	ENSSLDG00000008115	prpf4	98	73.904	Seriola_lalandi_dorsalis
ENSCJAG00000017856	PRPF4	100	90.230	ENSSPUG00000015582	PRPF4	100	90.230	Sphenodon_punctatus
ENSCJAG00000017856	PRPF4	96	71.203	ENSSPAG00000011286	prpf4	99	71.203	Stegastes_partitus
ENSCJAG00000017856	PRPF4	100	99.808	ENSSSCG00000024648	PRPF4	100	99.808	Sus_scrofa
ENSCJAG00000017856	PRPF4	94	90.798	ENSTGUG00000002623	PRPF4	100	90.798	Taeniopygia_guttata
ENSCJAG00000017856	PRPF4	97	75.494	ENSTRUG00000008853	prpf4	99	75.494	Takifugu_rubripes
ENSCJAG00000017856	PRPF4	97	74.851	ENSTNIG00000013250	prpf4	99	74.851	Tetraodon_nigroviridis
ENSCJAG00000017856	PRPF4	100	90.996	ENSTBEG00000000821	PRPF4	100	90.996	Tupaia_belangeri
ENSCJAG00000017856	PRPF4	82	99.329	ENSTTRG00000003246	PRPF4	85	99.329	Tursiops_truncatus
ENSCJAG00000017856	PRPF4	64	96.418	ENSUAMG00000018288	PRPF4	90	96.418	Ursus_americanus
ENSCJAG00000017856	PRPF4	100	98.851	ENSUMAG00000019375	PRPF4	100	98.851	Ursus_maritimus
ENSCJAG00000017856	PRPF4	100	99.425	ENSVPAG00000005281	PRPF4	100	99.425	Vicugna_pacos
ENSCJAG00000017856	PRPF4	100	98.479	ENSVVUG00000002476	PRPF4	100	98.479	Vulpes_vulpes
ENSCJAG00000017856	PRPF4	69	58.056	ENSXCOG00000006101	prpf4	93	59.360	Xiphophorus_couchianus
ENSCJAG00000017856	PRPF4	87	64.410	ENSXMAG00000002750	prpf4	98	65.408	Xiphophorus_maculatus