EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000017920 (Gene tree)
Gene ID: 100398569
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 199157 bases
Position: chrNTIC01034389.1:34237175-34436331
Accession: 100398569
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000033094	ResIII	PF04851.15	8.1e-09	1	1
ENSCJAP00000067506	ResIII	PF04851.15	4.1e-08	1	1
ENSCJAP00000057302	ResIII	PF04851.15	4.2e-08	1	1
ENSCJAP00000033189	ResIII	PF04851.15	4.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000035075	CHD6-201	10946	XM_002806769	ENSCJAP00000033189	2714 (aa)	XP_002806815	U3CJH2
ENSCJAT00000034972	CHD6-204	1641	-	ENSCJAP00000033094	546 (aa)	-	F6TI05
ENSCJAT00000068683	CHD6-202	8121	-	ENSCJAP00000057302	2706 (aa)	-	A0A2R8MCB8
ENSCJAT00000082213	CHD6-203	8094	-	ENSCJAP00000067506	2697 (aa)	-	A0A2R8PNB3
ENSCJAT00000086334	CHD6-205	1143	-	ENSCJAP00000066511	380 (aa)	-	A0A2R8PLP2

Gene Model

Click here to download ENSCJAG00000017920's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000017920's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000017920	CHD6	68	35.347	ENSCJAG00000015819	HELLS	83	37.954
ENSCJAG00000017920	CHD6	99	72.344	ENSCJAG00000009002	CHD8	67	65.000
ENSCJAG00000017920	CHD6	99	71.927	ENSCJAG00000001573	CHD9	91	46.179
ENSCJAG00000017920	CHD6	99	72.894	ENSCJAG00000009025	CHD7	71	65.387
ENSCJAG00000017920	CHD6	68	40.789	ENSCJAG00000002406	CHD1L	58	42.105
ENSCJAG00000017920	CHD6	85	40.447	ENSCJAG00000020444	-	60	32.635
ENSCJAG00000017920	CHD6	75	40.048	ENSCJAG00000002868	SMARCA1	50	41.385

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000017920	CHD6	100	96.797	ENSG00000124177	CHD6	99	99.660	Homo_sapiens
ENSCJAG00000017920	CHD6	99	82.234	ENSAPOG00000013736	chd6	67	71.883	Acanthochromis_polyacanthus
ENSCJAG00000017920	CHD6	99	93.211	ENSAMEG00000009496	CHD6	100	91.216	Ailuropoda_melanoleuca
ENSCJAG00000017920	CHD6	99	81.868	ENSATEG00000005608	chd6	62	77.188	Anabas_testudineus
ENSCJAG00000017920	CHD6	99	89.725	ENSAPLG00000015592	CHD6	100	72.647	Anas_platyrhynchos
ENSCJAG00000017920	CHD6	99	80.741	ENSACAG00000006842	CHD6	99	68.182	Anolis_carolinensis
ENSCJAG00000017920	CHD6	100	99.817	ENSANAG00000037548	CHD6	100	99.817	Aotus_nancymaae
ENSCJAG00000017920	CHD6	94	86.408	ENSAMXG00000009576	chd6	74	72.479	Astyanax_mexicanus
ENSCJAG00000017920	CHD6	99	93.028	ENSBTAG00000005733	CHD6	100	88.032	Bos_taurus
ENSCJAG00000017920	CHD6	99	93.211	ENSCAFG00000009236	CHD6	100	91.213	Canis_familiaris
ENSCJAG00000017920	CHD6	100	97.802	ENSCAFG00020012906	CHD6	100	97.802	Canis_lupus_dingo
ENSCJAG00000017920	CHD6	99	93.394	ENSCHIG00000017606	CHD6	100	88.142	Capra_hircus
ENSCJAG00000017920	CHD6	84	92.365	ENSTSYG00000014635	CHD6	100	92.365	Carlito_syrichta
ENSCJAG00000017920	CHD6	99	93.211	ENSCPOG00000015641	CHD6	100	91.069	Cavia_porcellus
ENSCJAG00000017920	CHD6	100	99.817	ENSCCAG00000036828	CHD6	100	99.817	Cebus_capucinus
ENSCJAG00000017920	CHD6	100	99.817	ENSCATG00000039248	CHD6	100	99.817	Cercocebus_atys
ENSCJAG00000017920	CHD6	99	93.028	ENSCLAG00000013743	CHD6	100	90.722	Chinchilla_lanigera
ENSCJAG00000017920	CHD6	100	96.723	ENSCSAG00000013997	CHD6	100	96.723	Chlorocebus_sabaeus
ENSCJAG00000017920	CHD6	99	86.972	ENSCHOG00000012647	CHD6	95	89.657	Choloepus_hoffmanni
ENSCJAG00000017920	CHD6	99	89.541	ENSCPBG00000019382	CHD6	99	73.590	Chrysemys_picta_bellii
ENSCJAG00000017920	CHD6	100	99.817	ENSCANG00000043435	CHD6	100	99.817	Colobus_angolensis_palliatus
ENSCJAG00000017920	CHD6	99	91.193	ENSCGRG00001002694	Chd6	100	89.265	Cricetulus_griseus_chok1gshd
ENSCJAG00000017920	CHD6	100	97.070	ENSCGRG00000006749	-	100	97.070	Cricetulus_griseus_crigri
ENSCJAG00000017920	CHD6	91	88.956	ENSDARG00000017244	chd6	79	73.738	Danio_rerio
ENSCJAG00000017920	CHD6	99	92.661	ENSDNOG00000004176	CHD6	99	90.269	Dasypus_novemcinctus
ENSCJAG00000017920	CHD6	100	98.168	ENSEASG00005023433	CHD6	100	98.168	Equus_asinus_asinus
ENSCJAG00000017920	CHD6	99	93.211	ENSECAG00000011761	CHD6	100	91.982	Equus_caballus
ENSCJAG00000017920	CHD6	94	85.243	ENSELUG00000012309	chd6	92	79.939	Esox_lucius
ENSCJAG00000017920	CHD6	99	93.211	ENSFCAG00000003572	CHD6	100	91.327	Felis_catus
ENSCJAG00000017920	CHD6	99	89.174	ENSFALG00000012563	CHD6	94	77.807	Ficedula_albicollis
ENSCJAG00000017920	CHD6	99	92.477	ENSFDAG00000013791	CHD6	99	91.519	Fukomys_damarensis
ENSCJAG00000017920	CHD6	89	82.992	ENSGMOG00000011715	chd6	85	69.640	Gadus_morhua
ENSCJAG00000017920	CHD6	94	80.039	ENSGACG00000000037	chd6	86	69.042	Gasterosteus_aculeatus
ENSCJAG00000017920	CHD6	61	94.311	ENSGAGG00000007475	-	79	94.461	Gopherus_agassizii
ENSCJAG00000017920	CHD6	100	99.817	ENSGGOG00000013123	CHD6	100	99.817	Gorilla_gorilla
ENSCJAG00000017920	CHD6	99	81.136	ENSHBUG00000014701	chd6	62	76.669	Haplochromis_burtoni
ENSCJAG00000017920	CHD6	99	92.661	ENSHGLG00000004548	CHD6	100	91.550	Heterocephalus_glaber_female
ENSCJAG00000017920	CHD6	99	92.661	ENSHGLG00100006401	CHD6	100	91.550	Heterocephalus_glaber_male
ENSCJAG00000017920	CHD6	94	85.437	ENSIPUG00000003692	chd6	74	76.253	Ictalurus_punctatus
ENSCJAG00000017920	CHD6	99	93.211	ENSSTOG00000013382	CHD6	100	92.062	Ictidomys_tridecemlineatus
ENSCJAG00000017920	CHD6	99	84.404	ENSLACG00000010881	CHD6	86	77.121	Latimeria_chalumnae
ENSCJAG00000017920	CHD6	99	83.303	ENSLOCG00000007386	chd6	84	75.483	Lepisosteus_oculatus
ENSCJAG00000017920	CHD6	99	92.844	ENSLAFG00000012144	CHD6	100	91.514	Loxodonta_africana
ENSCJAG00000017920	CHD6	100	99.817	ENSMFAG00000032830	CHD6	100	99.817	Macaca_fascicularis
ENSCJAG00000017920	CHD6	100	99.817	ENSMMUG00000020458	CHD6	100	99.817	Macaca_mulatta
ENSCJAG00000017920	CHD6	100	99.817	ENSMNEG00000040847	CHD6	100	99.817	Macaca_nemestrina
ENSCJAG00000017920	CHD6	100	99.817	ENSMLEG00000031965	CHD6	100	99.817	Mandrillus_leucophaeus
ENSCJAG00000017920	CHD6	99	81.502	ENSMAMG00000013111	chd6	62	77.172	Mastacembelus_armatus
ENSCJAG00000017920	CHD6	99	89.194	ENSMGAG00000001121	CHD6	100	72.003	Meleagris_gallopavo
ENSCJAG00000017920	CHD6	100	98.901	ENSMICG00000016641	CHD6	100	98.901	Microcebus_murinus
ENSCJAG00000017920	CHD6	99	91.376	ENSMOCG00000014004	-	97	94.104	Microtus_ochrogaster
ENSCJAG00000017920	CHD6	99	91.560	ENSMODG00000000720	-	99	81.057	Monodelphis_domestica
ENSCJAG00000017920	CHD6	99	90.826	MGP_CAROLIEiJ_G0024604	Chd6	100	94.515	Mus_caroli
ENSCJAG00000017920	CHD6	99	90.826	ENSMUSG00000057133	Chd6	100	94.430	Mus_musculus
ENSCJAG00000017920	CHD6	99	91.009	MGP_PahariEiJ_G0026048	Chd6	100	94.852	Mus_pahari
ENSCJAG00000017920	CHD6	99	90.826	MGP_SPRETEiJ_G0025526	Chd6	100	94.515	Mus_spretus
ENSCJAG00000017920	CHD6	99	93.211	ENSMPUG00000017695	CHD6	100	89.809	Mustela_putorius_furo
ENSCJAG00000017920	CHD6	99	92.844	ENSMLUG00000016247	CHD6	100	90.812	Myotis_lucifugus
ENSCJAG00000017920	CHD6	99	81.365	ENSNBRG00000013839	chd6	79	72.917	Neolamprologus_brichardi
ENSCJAG00000017920	CHD6	100	94.884	ENSNLEG00000006496	CHD6	99	95.436	Nomascus_leucogenys
ENSCJAG00000017920	CHD6	100	87.505	ENSOPRG00000013376	-	100	87.505	Ochotona_princeps
ENSCJAG00000017920	CHD6	99	81.319	ENSONIG00000000393	chd6	85	73.529	Oreochromis_niloticus
ENSCJAG00000017920	CHD6	99	89.725	ENSOANG00000014347	CHD6	99	70.134	Ornithorhynchus_anatinus
ENSCJAG00000017920	CHD6	99	93.394	ENSOCUG00000012394	CHD6	100	89.776	Oryctolagus_cuniculus
ENSCJAG00000017920	CHD6	96	84.571	ENSORLG00020021891	chd6	99	84.571	Oryzias_latipes_hni
ENSCJAG00000017920	CHD6	99	93.028	ENSOGAG00000002427	CHD6	100	91.605	Otolemur_garnettii
ENSCJAG00000017920	CHD6	99	93.394	ENSOARG00000002597	CHD6	100	85.966	Ovis_aries
ENSCJAG00000017920	CHD6	99	93.211	ENSPPRG00000014756	CHD6	100	91.437	Panthera_pardus
ENSCJAG00000017920	CHD6	99	93.211	ENSPTIG00000011094	CHD6	100	91.327	Panthera_tigris_altaica
ENSCJAG00000017920	CHD6	100	99.817	ENSPTRG00000013504	CHD6	99	99.817	Pan_troglodytes
ENSCJAG00000017920	CHD6	100	99.634	ENSPANG00000025554	CHD6	100	99.634	Papio_anubis
ENSCJAG00000017920	CHD6	94	86.990	ENSPKIG00000005578	chd6	79	72.744	Paramormyrops_kingsleyae
ENSCJAG00000017920	CHD6	99	82.202	ENSPMGG00000014877	chd6	88	76.879	Periophthalmus_magnuspinnatus
ENSCJAG00000017920	CHD6	100	97.070	ENSPEMG00000014672	-	100	97.070	Peromyscus_maniculatus_bairdii
ENSCJAG00000017920	CHD6	99	91.927	ENSPCIG00000028037	CHD6	100	80.821	Phascolarctos_cinereus
ENSCJAG00000017920	CHD6	99	81.319	ENSPLAG00000003128	chd6	68	72.524	Poecilia_latipinna
ENSCJAG00000017920	CHD6	99	81.319	ENSPREG00000022653	chd6	99	86.447	Poecilia_reticulata
ENSCJAG00000017920	CHD6	100	96.872	ENSPPYG00000011016	CHD6	100	96.872	Pongo_abelii
ENSCJAG00000017920	CHD6	100	99.451	ENSPCOG00000001089	CHD6	100	99.451	Propithecus_coquereli
ENSCJAG00000017920	CHD6	99	81.136	ENSPNYG00000022516	chd6	78	74.170	Pundamilia_nyererei
ENSCJAG00000017920	CHD6	94	86.990	ENSPNAG00000012825	chd6	76	73.983	Pygocentrus_nattereri
ENSCJAG00000017920	CHD6	99	90.642	ENSRNOG00000016744	Chd6	100	87.132	Rattus_norvegicus
ENSCJAG00000017920	CHD6	100	99.817	ENSSBOG00000022089	CHD6	99	99.817	Saimiri_boliviensis_boliviensis
ENSCJAG00000017920	CHD6	99	91.743	ENSSHAG00000017072	CHD6	100	80.169	Sarcophilus_harrisii
ENSCJAG00000017920	CHD6	94	86.990	ENSSFOG00015012920	chd6	77	76.505	Scleropages_formosus
ENSCJAG00000017920	CHD6	84	99.563	ENSSARG00000002615	-	61	99.342	Sorex_araneus
ENSCJAG00000017920	CHD6	99	93.211	ENSSSCG00000007360	CHD6	100	90.686	Sus_scrofa
ENSCJAG00000017920	CHD6	99	89.541	ENSTGUG00000003179	CHD6	99	73.712	Taeniopygia_guttata
ENSCJAG00000017920	CHD6	99	80.037	ENSTNIG00000017487	chd6	86	77.114	Tetraodon_nigroviridis
ENSCJAG00000017920	CHD6	99	91.193	ENSTTRG00000013438	CHD6	100	87.555	Tursiops_truncatus
ENSCJAG00000017920	CHD6	100	97.802	ENSUAMG00000024036	CHD6	100	97.802	Ursus_americanus
ENSCJAG00000017920	CHD6	100	97.802	ENSUMAG00000002017	CHD6	100	97.802	Ursus_maritimus
ENSCJAG00000017920	CHD6	98	87.850	ENSVPAG00000007941	CHD6	95	89.528	Vicugna_pacos
ENSCJAG00000017920	CHD6	99	93.211	ENSVVUG00000029164	CHD6	100	91.290	Vulpes_vulpes
ENSCJAG00000017920	CHD6	99	64.220	ENSXETG00000021445	chd6	99	60.904	Xenopus_tropicalis