EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000019139 (Gene tree)
Gene ID: 100404144
Gene Symbol: RBM38
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 17737 bases
Position: chrNTIC01034389.1:50122614-50140350
Accession: 100404144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000052762	RRM_1	PF00076.22	1.8e-18	1	1
ENSCJAP00000035523	RRM_1	PF00076.22	5.2e-18	1	1
ENSCJAP00000058969	RRM_1	PF00076.22	2.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000077787	RBM38-202	366	-	ENSCJAP00000052762	121 (aa)	XP_008994409	A0A2R8M2Q7
ENSCJAT00000083841	RBM38-203	264	-	ENSCJAP00000058969	87 (aa)	-	A0A2R8MFT9
ENSCJAT00000037516	RBM38-201	3274	-	ENSCJAP00000035523	239 (aa)	XP_002747755	F7I6A9

Gene Model

Click here to download ENSCJAG00000019139's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000019139's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000019139	RBM38	64	44.118	ENSCJAG00000018864	-	55	44.118
ENSCJAG00000019139	RBM38	62	39.474	ENSCJAG00000040528	-	79	41.935
ENSCJAG00000019139	RBM38	87	42.373	ENSCJAG00000008578	MSI1	81	36.842
ENSCJAG00000019139	RBM38	70	41.772	ENSCJAG00000023383	-	67	41.026
ENSCJAG00000019139	RBM38	63	37.705	ENSCJAG00000013725	ELAVL4	61	35.897
ENSCJAG00000019139	RBM38	69	33.735	ENSCJAG00000016946	SLIRP	73	35.294
ENSCJAG00000019139	RBM38	50	36.667	ENSCJAG00000004092	BOLL	51	31.250
ENSCJAG00000019139	RBM38	51	40.323	ENSCJAG00000041629	-	70	40.323
ENSCJAG00000019139	RBM38	70	41.333	ENSCJAG00000041746	-	68	41.333
ENSCJAG00000019139	RBM38	71	34.177	ENSCJAG00000012235	HNRNPAB	54	34.177
ENSCJAG00000019139	RBM38	72	42.045	ENSCJAG00000005504	CIRBP	54	41.304
ENSCJAG00000019139	RBM38	74	42.857	ENSCJAG00000007908	HNRNPA2B1	64	42.857
ENSCJAG00000019139	RBM38	67	37.333	ENSCJAG00000006112	HNRNPA0	51	37.333
ENSCJAG00000019139	RBM38	81	91.837	ENSCJAG00000006579	RBM24	100	68.067
ENSCJAG00000019139	RBM38	75	32.000	ENSCJAG00000045227	-	55	32.000
ENSCJAG00000019139	RBM38	62	42.105	ENSCJAG00000047341	-	69	43.548
ENSCJAG00000019139	RBM38	97	35.294	ENSCJAG00000005609	DAZAP1	50	34.862
ENSCJAG00000019139	RBM38	89	40.260	ENSCJAG00000013998	MSI2	66	40.260

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000019139	RBM38	100	99.174	ENSG00000132819	RBM38	100	99.174	Homo_sapiens
ENSCJAG00000019139	RBM38	81	85.859	ENSAPOG00000003301	rbm38	91	58.621	Acanthochromis_polyacanthus
ENSCJAG00000019139	RBM38	82	90.099	ENSAPOG00000009939	-	94	68.018	Acanthochromis_polyacanthus
ENSCJAG00000019139	RBM38	81	85.859	ENSACIG00000000010	rbm38	91	56.652	Amphilophus_citrinellus
ENSCJAG00000019139	RBM38	81	92.929	ENSACIG00000012502	-	100	89.744	Amphilophus_citrinellus
ENSCJAG00000019139	RBM38	81	85.859	ENSAOCG00000013497	-	91	58.621	Amphiprion_ocellaris
ENSCJAG00000019139	RBM38	100	79.675	ENSAOCG00000012559	RBM38	99	64.344	Amphiprion_ocellaris
ENSCJAG00000019139	RBM38	99	76.423	ENSAPEG00000013137	rbm38	99	59.836	Amphiprion_percula
ENSCJAG00000019139	RBM38	82	90.099	ENSAPEG00000023581	-	95	65.966	Amphiprion_percula
ENSCJAG00000019139	RBM38	81	84.848	ENSATEG00000016366	rbm38	94	60.268	Anabas_testudineus
ENSCJAG00000019139	RBM38	78	93.617	ENSATEG00000016710	-	92	67.241	Anabas_testudineus
ENSCJAG00000019139	RBM38	82	91.919	ENSACAG00000016238	RBM38	97	75.424	Anolis_carolinensis
ENSCJAG00000019139	RBM38	100	100.000	ENSANAG00000031959	RBM38	100	100.000	Aotus_nancymaae
ENSCJAG00000019139	RBM38	78	94.681	ENSACLG00000019514	-	92	67.672	Astatotilapia_calliptera
ENSCJAG00000019139	RBM38	78	86.170	ENSAMXG00000038120	rbm38	76	65.405	Astyanax_mexicanus
ENSCJAG00000019139	RBM38	82	91.089	ENSAMXG00000015601	-	95	67.826	Astyanax_mexicanus
ENSCJAG00000019139	RBM38	100	98.347	ENSBTAG00000008105	RBM38	100	95.397	Bos_taurus
ENSCJAG00000019139	RBM38	74	85.393	WBGene00006321	sup-12	59	85.393	Caenorhabditis_elegans
ENSCJAG00000019139	RBM38	100	99.174	ENSCAFG00020021943	RBM38	100	95.816	Canis_lupus_dingo
ENSCJAG00000019139	RBM38	100	97.521	ENSCHIG00000002609	RBM38	100	93.724	Capra_hircus
ENSCJAG00000019139	RBM38	100	100.000	ENSCPOG00000012781	RBM38	100	95.397	Cavia_porcellus
ENSCJAG00000019139	RBM38	100	100.000	ENSCCAG00000036872	RBM38	100	100.000	Cebus_capucinus
ENSCJAG00000019139	RBM38	100	100.000	ENSCATG00000032133	RBM38	100	100.000	Cercocebus_atys
ENSCJAG00000019139	RBM38	93	100.000	ENSCLAG00000005906	RBM38	100	95.217	Chinchilla_lanigera
ENSCJAG00000019139	RBM38	100	100.000	ENSCSAG00000015503	RBM38	100	97.908	Chlorocebus_sabaeus
ENSCJAG00000019139	RBM38	81	94.898	ENSCPBG00000024059	RBM38	100	82.110	Chrysemys_picta_bellii
ENSCJAG00000019139	RBM38	80	84.536	ENSCING00000025102	-	86	56.039	Ciona_intestinalis
ENSCJAG00000019139	RBM38	80	84.536	ENSCSAVG00000001132	-	76	57.073	Ciona_savignyi
ENSCJAG00000019139	RBM38	99	80.833	ENSCANG00000030105	-	89	75.630	Colobus_angolensis_palliatus
ENSCJAG00000019139	RBM38	100	95.868	ENSCGRG00001012928	Rbm38	100	93.305	Cricetulus_griseus_chok1gshd
ENSCJAG00000019139	RBM38	79	82.292	ENSCSEG00000020943	rbm38	60	61.413	Cynoglossus_semilaevis
ENSCJAG00000019139	RBM38	78	93.617	ENSCSEG00000004701	-	93	72.727	Cynoglossus_semilaevis
ENSCJAG00000019139	RBM38	78	95.745	ENSCVAG00000005472	-	92	67.660	Cyprinodon_variegatus
ENSCJAG00000019139	RBM38	76	91.304	ENSCVAG00000015952	rbm38	91	59.227	Cyprinodon_variegatus
ENSCJAG00000019139	RBM38	78	92.553	ENSDARG00000058818	rbm38	92	63.677	Danio_rerio
ENSCJAG00000019139	RBM38	90	90.278	ENSDNOG00000032004	RBM38	100	90.278	Dasypus_novemcinctus
ENSCJAG00000019139	RBM38	88	85.047	ENSEBUG00000015164	rbm38	66	85.047	Eptatretus_burgeri
ENSCJAG00000019139	RBM38	100	98.347	ENSECAG00000007700	RBM38	100	94.979	Equus_caballus
ENSCJAG00000019139	RBM38	100	95.041	ENSEEUG00000013489	RBM38	100	93.333	Erinaceus_europaeus
ENSCJAG00000019139	RBM38	81	88.889	ENSELUG00000000585	-	87	65.672	Esox_lucius
ENSCJAG00000019139	RBM38	81	89.000	ENSELUG00000005849	-	95	67.089	Esox_lucius
ENSCJAG00000019139	RBM38	100	98.347	ENSFCAG00000042916	RBM38	100	98.347	Felis_catus
ENSCJAG00000019139	RBM38	85	93.204	ENSFALG00000010805	RBM38	93	84.358	Ficedula_albicollis
ENSCJAG00000019139	RBM38	77	91.398	ENSFHEG00000017748	rbm38	91	57.082	Fundulus_heteroclitus
ENSCJAG00000019139	RBM38	78	95.745	ENSFHEG00000006160	-	92	72.685	Fundulus_heteroclitus
ENSCJAG00000019139	RBM38	78	93.617	ENSGMOG00000016655	-	96	76.374	Gadus_morhua
ENSCJAG00000019139	RBM38	81	94.898	ENSGALG00000026081	RBM38	100	80.275	Gallus_gallus
ENSCJAG00000019139	RBM38	80	85.714	ENSGACG00000015224	rbm38	98	62.736	Gasterosteus_aculeatus
ENSCJAG00000019139	RBM38	81	88.000	ENSGACG00000009873	-	100	68.444	Gasterosteus_aculeatus
ENSCJAG00000019139	RBM38	81	94.898	ENSGAGG00000001187	RBM38	100	82.569	Gopherus_agassizii
ENSCJAG00000019139	RBM38	78	94.681	ENSHBUG00000011778	-	92	71.689	Haplochromis_burtoni
ENSCJAG00000019139	RBM38	81	84.848	ENSHBUG00000012058	rbm38	98	58.506	Haplochromis_burtoni
ENSCJAG00000019139	RBM38	100	98.347	ENSHGLG00000015077	RBM38	100	92.050	Heterocephalus_glaber_female
ENSCJAG00000019139	RBM38	74	85.556	ENSHCOG00000019040	rbm38	70	64.671	Hippocampus_comes
ENSCJAG00000019139	RBM38	82	89.109	ENSHCOG00000005622	-	54	73.958	Hippocampus_comes
ENSCJAG00000019139	RBM38	82	91.089	ENSIPUG00000019349	-	95	65.948	Ictalurus_punctatus
ENSCJAG00000019139	RBM38	83	97.222	ENSJJAG00000016299	-	90	97.222	Jaculus_jaculus
ENSCJAG00000019139	RBM38	74	86.517	ENSKMAG00000012402	rbm38	98	54.661	Kryptolebias_marmoratus
ENSCJAG00000019139	RBM38	81	85.859	ENSLBEG00000018878	rbm38	91	57.940	Labrus_bergylta
ENSCJAG00000019139	RBM38	78	93.617	ENSLBEG00000016163	RBM38	92	71.233	Labrus_bergylta
ENSCJAG00000019139	RBM38	82	91.000	ENSLOCG00000003456	rbm38	95	71.556	Lepisosteus_oculatus
ENSCJAG00000019139	RBM38	97	100.000	ENSMFAG00000043808	RBM38	97	100.000	Macaca_fascicularis
ENSCJAG00000019139	RBM38	100	100.000	ENSMMUG00000031391	RBM38	100	100.000	Macaca_mulatta
ENSCJAG00000019139	RBM38	100	100.000	ENSMNEG00000034683	RBM38	100	100.000	Macaca_nemestrina
ENSCJAG00000019139	RBM38	77	81.720	ENSMLEG00000043261	-	88	83.486	Mandrillus_leucophaeus
ENSCJAG00000019139	RBM38	82	90.099	ENSMAMG00000020499	RBM38	95	66.667	Mastacembelus_armatus
ENSCJAG00000019139	RBM38	81	84.848	ENSMAMG00000024135	rbm38	91	58.798	Mastacembelus_armatus
ENSCJAG00000019139	RBM38	81	84.848	ENSMZEG00005026036	rbm38	91	56.652	Maylandia_zebra
ENSCJAG00000019139	RBM38	78	94.681	ENSMZEG00005000849	-	92	71.689	Maylandia_zebra
ENSCJAG00000019139	RBM38	100	95.868	ENSMAUG00000021211	Rbm38	100	92.887	Mesocricetus_auratus
ENSCJAG00000019139	RBM38	90	97.222	ENSMICG00000038011	RBM38	100	97.222	Microcebus_murinus
ENSCJAG00000019139	RBM38	100	93.388	ENSMOCG00000008715	Rbm38	100	92.050	Microtus_ochrogaster
ENSCJAG00000019139	RBM38	96	82.759	ENSMMOG00000020051	-	99	67.500	Mola_mola
ENSCJAG00000019139	RBM38	100	88.430	ENSMODG00000016458	RBM38	100	80.083	Monodelphis_domestica
ENSCJAG00000019139	RBM38	82	90.099	ENSMALG00000004680	RBM38	70	75.132	Monopterus_albus
ENSCJAG00000019139	RBM38	81	81.633	ENSMALG00000022327	rbm38	93	56.195	Monopterus_albus
ENSCJAG00000019139	RBM38	100	94.215	MGP_CAROLIEiJ_G0024745	Rbm38	100	92.887	Mus_caroli
ENSCJAG00000019139	RBM38	100	94.215	ENSMUSG00000027510	Rbm38	100	93.305	Mus_musculus
ENSCJAG00000019139	RBM38	100	95.041	MGP_PahariEiJ_G0026186	Rbm38	100	93.305	Mus_pahari
ENSCJAG00000019139	RBM38	100	94.215	MGP_SPRETEiJ_G0025665	Rbm38	100	93.724	Mus_spretus
ENSCJAG00000019139	RBM38	81	98.980	ENSMPUG00000006518	RBM38	93	96.257	Mustela_putorius_furo
ENSCJAG00000019139	RBM38	90	90.741	ENSMLUG00000011140	RBM38	100	90.741	Myotis_lucifugus
ENSCJAG00000019139	RBM38	85	92.000	ENSNGAG00000014017	-	64	93.243	Nannospalax_galili
ENSCJAG00000019139	RBM38	92	79.130	ENSNBRG00000022685	rbm38	98	58.750	Neolamprologus_brichardi
ENSCJAG00000019139	RBM38	78	94.681	ENSNBRG00000022545	-	92	67.672	Neolamprologus_brichardi
ENSCJAG00000019139	RBM38	100	80.992	ENSMEUG00000005475	-	100	81.159	Notamacropus_eugenii
ENSCJAG00000019139	RBM38	100	100.000	ENSODEG00000007980	RBM38	100	96.234	Octodon_degus
ENSCJAG00000019139	RBM38	78	94.681	ENSONIG00000020324	-	92	67.532	Oreochromis_niloticus
ENSCJAG00000019139	RBM38	81	84.848	ENSONIG00000017073	rbm38	93	56.897	Oreochromis_niloticus
ENSCJAG00000019139	RBM38	88	90.566	ENSOANG00000009259	RBM38	90	77.119	Ornithorhynchus_anatinus
ENSCJAG00000019139	RBM38	78	87.368	ENSORLG00000012154	rbm38	91	54.701	Oryzias_latipes
ENSCJAG00000019139	RBM38	78	93.617	ENSORLG00000027180	-	92	65.665	Oryzias_latipes
ENSCJAG00000019139	RBM38	78	93.617	ENSORLG00020020751	-	95	63.306	Oryzias_latipes_hni
ENSCJAG00000019139	RBM38	80	85.714	ENSORLG00020017871	rbm38	91	55.556	Oryzias_latipes_hni
ENSCJAG00000019139	RBM38	78	93.617	ENSORLG00015017040	-	92	66.524	Oryzias_latipes_hsok
ENSCJAG00000019139	RBM38	94	78.947	ENSORLG00015012606	rbm38	97	57.021	Oryzias_latipes_hsok
ENSCJAG00000019139	RBM38	78	93.617	ENSOMEG00000023912	-	92	64.935	Oryzias_melastigma
ENSCJAG00000019139	RBM38	80	84.694	ENSOMEG00000006805	rbm38	91	55.128	Oryzias_melastigma
ENSCJAG00000019139	RBM38	100	99.180	ENSOGAG00000029136	RBM38	100	97.917	Otolemur_garnettii
ENSCJAG00000019139	RBM38	57	98.000	ENSPPAG00000040327	-	95	80.769	Pan_paniscus
ENSCJAG00000019139	RBM38	100	98.347	ENSPPRG00000009507	RBM38	100	98.347	Panthera_pardus
ENSCJAG00000019139	RBM38	81	100.000	ENSPTRG00000045845	-	70	96.875	Pan_troglodytes
ENSCJAG00000019139	RBM38	100	99.174	ENSPTRG00000013661	RBM38	100	99.174	Pan_troglodytes
ENSCJAG00000019139	RBM38	100	100.000	ENSPANG00000020919	-	100	100.000	Papio_anubis
ENSCJAG00000019139	RBM38	99	76.050	ENSPANG00000033127	-	100	76.050	Papio_anubis
ENSCJAG00000019139	RBM38	84	85.849	ENSPKIG00000025417	rbm38	98	63.115	Paramormyrops_kingsleyae
ENSCJAG00000019139	RBM38	83	92.079	ENSPKIG00000018122	-	100	88.889	Paramormyrops_kingsleyae
ENSCJAG00000019139	RBM38	86	92.308	ENSPSIG00000011649	RBM38	95	80.357	Pelodiscus_sinensis
ENSCJAG00000019139	RBM38	78	87.234	ENSPMGG00000017094	-	92	65.236	Periophthalmus_magnuspinnatus
ENSCJAG00000019139	RBM38	81	84.848	ENSPMGG00000011343	rbm38	94	57.563	Periophthalmus_magnuspinnatus
ENSCJAG00000019139	RBM38	100	88.430	ENSPCIG00000013648	RBM38	100	80.083	Phascolarctos_cinereus
ENSCJAG00000019139	RBM38	78	90.426	ENSPFOG00000011658	rbm38	91	57.692	Poecilia_formosa
ENSCJAG00000019139	RBM38	78	90.426	ENSPLAG00000005218	rbm38	91	57.692	Poecilia_latipinna
ENSCJAG00000019139	RBM38	78	95.745	ENSPLAG00000002500	-	92	67.373	Poecilia_latipinna
ENSCJAG00000019139	RBM38	78	90.426	ENSPMEG00000015770	rbm38	91	57.692	Poecilia_mexicana
ENSCJAG00000019139	RBM38	78	90.426	ENSPREG00000007398	rbm38	91	58.120	Poecilia_reticulata
ENSCJAG00000019139	RBM38	100	99.180	ENSPCOG00000026201	RBM38	100	99.180	Propithecus_coquereli
ENSCJAG00000019139	RBM38	84	97.260	ENSPVAG00000006457	RBM38	100	66.946	Pteropus_vampyrus
ENSCJAG00000019139	RBM38	86	78.704	ENSPNYG00000021373	rbm38	98	58.159	Pundamilia_nyererei
ENSCJAG00000019139	RBM38	81	93.939	ENSPNYG00000019727	-	100	90.598	Pundamilia_nyererei
ENSCJAG00000019139	RBM38	79	91.667	ENSPNAG00000010596	rbm38	88	64.789	Pygocentrus_nattereri
ENSCJAG00000019139	RBM38	82	91.089	ENSPNAG00000015123	-	96	77.273	Pygocentrus_nattereri
ENSCJAG00000019139	RBM38	100	95.041	ENSRNOG00000006420	Rbm38	100	92.887	Rattus_norvegicus
ENSCJAG00000019139	RBM38	100	88.430	ENSRROG00000036388	-	100	80.335	Rhinopithecus_roxellana
ENSCJAG00000019139	RBM38	90	99.074	ENSSBOG00000031053	RBM38	100	100.000	Saimiri_boliviensis_boliviensis
ENSCJAG00000019139	RBM38	78	93.617	ENSSFOG00015004453	rbm38	92	69.545	Scleropages_formosus
ENSCJAG00000019139	RBM38	78	93.617	ENSSDUG00000021082	RBM38	92	67.382	Seriola_dumerili
ENSCJAG00000019139	RBM38	81	85.859	ENSSDUG00000022611	rbm38	91	59.657	Seriola_dumerili
ENSCJAG00000019139	RBM38	78	93.617	ENSSLDG00000011778	RBM38	92	67.382	Seriola_lalandi_dorsalis
ENSCJAG00000019139	RBM38	81	85.859	ENSSLDG00000010845	rbm38	90	62.963	Seriola_lalandi_dorsalis
ENSCJAG00000019139	RBM38	81	85.859	ENSSPAG00000011113	rbm38	91	58.369	Stegastes_partitus
ENSCJAG00000019139	RBM38	78	93.617	ENSSPAG00000020989	RBM38	91	70.698	Stegastes_partitus
ENSCJAG00000019139	RBM38	100	99.174	ENSSSCG00000007504	RBM38	100	96.234	Sus_scrofa
ENSCJAG00000019139	RBM38	78	93.617	ENSTRUG00000019869	-	92	69.099	Takifugu_rubripes
ENSCJAG00000019139	RBM38	78	88.298	ENSTRUG00000024954	rbm38	91	55.895	Takifugu_rubripes
ENSCJAG00000019139	RBM38	78	94.681	ENSTNIG00000007093	-	97	71.622	Tetraodon_nigroviridis
ENSCJAG00000019139	RBM38	98	89.916	ENSTBEG00000001689	-	64	89.916	Tupaia_belangeri
ENSCJAG00000019139	RBM38	100	99.174	ENSUAMG00000019780	RBM38	100	96.234	Ursus_americanus
ENSCJAG00000019139	RBM38	100	99.174	ENSVVUG00000017246	RBM38	100	95.816	Vulpes_vulpes
ENSCJAG00000019139	RBM38	83	90.099	ENSXETG00000011268	rbm38	100	76.000	Xenopus_tropicalis
ENSCJAG00000019139	RBM38	78	95.745	ENSXCOG00000017324	-	60	79.699	Xiphophorus_couchianus
ENSCJAG00000019139	RBM38	77	91.398	ENSXMAG00000023662	rbm38	91	57.940	Xiphophorus_maculatus