EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000019627 (Gene tree)
Gene ID: 100388434
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 33291 bases
Position: chrNTIC01011113.1:15335553-15368843
Accession: 100388434
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000036494	UPF1_Zn_bind	PF09416.10	9.6e-75	1	1
ENSCJAP00000036494	ResIII	PF04851.15	3.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000038547	UPF1-201	3390	-	ENSCJAP00000036494	1129 (aa)	XP_017823020	F7HDF7

Gene Model

Click here to download ENSCJAG00000019627's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03013	RNA transport	KEGG
cjc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000019627's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000019627	UPF1	100	100.000	ENSG00000005007	UPF1	100	100.000	Homo_sapiens
ENSCJAG00000019627	UPF1	100	91.608	ENSAPOG00000010916	-	100	91.608	Acanthochromis_polyacanthus
ENSCJAG00000019627	UPF1	100	90.308	ENSAPOG00000023773	upf1	100	90.401	Acanthochromis_polyacanthus
ENSCJAG00000019627	UPF1	100	98.323	ENSAMEG00000011474	UPF1	100	98.323	Ailuropoda_melanoleuca
ENSCJAG00000019627	UPF1	100	90.141	ENSACIG00000019949	upf1	100	90.485	Amphilophus_citrinellus
ENSCJAG00000019627	UPF1	92	94.015	ENSACIG00000010985	-	100	94.112	Amphilophus_citrinellus
ENSCJAG00000019627	UPF1	100	89.823	ENSAOCG00000018519	upf1	100	90.401	Amphiprion_ocellaris
ENSCJAG00000019627	UPF1	100	91.696	ENSAOCG00000006352	-	100	91.696	Amphiprion_ocellaris
ENSCJAG00000019627	UPF1	100	91.696	ENSAPEG00000006292	-	100	91.696	Amphiprion_percula
ENSCJAG00000019627	UPF1	100	89.823	ENSAPEG00000016344	upf1	100	90.401	Amphiprion_percula
ENSCJAG00000019627	UPF1	100	89.024	ENSATEG00000017867	upf1	100	89.808	Anabas_testudineus
ENSCJAG00000019627	UPF1	100	91.696	ENSATEG00000016606	-	100	91.696	Anabas_testudineus
ENSCJAG00000019627	UPF1	93	98.192	ENSAPLG00000009175	UPF1	99	98.192	Anas_platyrhynchos
ENSCJAG00000019627	UPF1	95	97.209	ENSANAG00000024107	UPF1	97	97.209	Aotus_nancymaae
ENSCJAG00000019627	UPF1	100	89.877	ENSACLG00000007181	upf1	100	90.220	Astatotilapia_calliptera
ENSCJAG00000019627	UPF1	100	91.600	ENSACLG00000022630	-	100	91.512	Astatotilapia_calliptera
ENSCJAG00000019627	UPF1	100	92.226	ENSAMXG00000042187	upf1	100	92.668	Astyanax_mexicanus
ENSCJAG00000019627	UPF1	100	99.204	ENSBTAG00000020922	UPF1	100	99.204	Bos_taurus
ENSCJAG00000019627	UPF1	89	50.146	WBGene00004880	smg-2	99	47.602	Caenorhabditis_elegans
ENSCJAG00000019627	UPF1	100	99.646	ENSCAFG00000014578	UPF1	100	99.646	Canis_familiaris
ENSCJAG00000019627	UPF1	100	98.673	ENSCAFG00020012347	UPF1	100	98.673	Canis_lupus_dingo
ENSCJAG00000019627	UPF1	100	98.760	ENSCHIG00000011018	UPF1	100	98.760	Capra_hircus
ENSCJAG00000019627	UPF1	96	97.967	ENSTSYG00000008877	UPF1	99	97.967	Carlito_syrichta
ENSCJAG00000019627	UPF1	93	98.764	ENSCAPG00000005758	UPF1	95	98.764	Cavia_aperea
ENSCJAG00000019627	UPF1	100	96.463	ENSCPOG00000025463	UPF1	100	96.463	Cavia_porcellus
ENSCJAG00000019627	UPF1	100	99.291	ENSCCAG00000032175	UPF1	100	99.291	Cebus_capucinus
ENSCJAG00000019627	UPF1	95	98.411	ENSCATG00000040306	UPF1	98	98.411	Cercocebus_atys
ENSCJAG00000019627	UPF1	96	98.336	ENSCLAG00000004037	UPF1	100	99.620	Chinchilla_lanigera
ENSCJAG00000019627	UPF1	100	98.937	ENSCSAG00000005276	UPF1	100	98.937	Chlorocebus_sabaeus
ENSCJAG00000019627	UPF1	100	95.859	ENSCPBG00000012513	UPF1	100	95.859	Chrysemys_picta_bellii
ENSCJAG00000019627	UPF1	78	77.036	ENSCING00000021399	-	99	77.262	Ciona_intestinalis
ENSCJAG00000019627	UPF1	99	71.278	ENSCSAVG00000006533	-	99	71.278	Ciona_savignyi
ENSCJAG00000019627	UPF1	95	99.252	ENSCANG00000029819	UPF1	99	99.252	Colobus_angolensis_palliatus
ENSCJAG00000019627	UPF1	100	97.609	ENSCGRG00001021067	Upf1	100	97.609	Cricetulus_griseus_chok1gshd
ENSCJAG00000019627	UPF1	95	98.129	ENSCGRG00000013480	Upf1	99	98.129	Cricetulus_griseus_crigri
ENSCJAG00000019627	UPF1	100	91.600	ENSCSEG00000016159	-	100	91.512	Cynoglossus_semilaevis
ENSCJAG00000019627	UPF1	100	85.336	ENSCSEG00000017239	upf1	100	85.424	Cynoglossus_semilaevis
ENSCJAG00000019627	UPF1	100	91.519	ENSCVAG00000010561	upf1	100	91.431	Cyprinodon_variegatus
ENSCJAG00000019627	UPF1	100	92.049	ENSDARG00000016302	upf1	100	92.491	Danio_rerio
ENSCJAG00000019627	UPF1	95	95.884	ENSDORG00000009984	Upf1	96	95.884	Dipodomys_ordii
ENSCJAG00000019627	UPF1	85	70.143	FBgn0030354	Upf1	84	66.730	Drosophila_melanogaster
ENSCJAG00000019627	UPF1	56	84.076	ENSEBUG00000010069	upf1	96	83.917	Eptatretus_burgeri
ENSCJAG00000019627	UPF1	100	98.230	ENSEASG00005006549	UPF1	100	98.230	Equus_asinus_asinus
ENSCJAG00000019627	UPF1	100	98.230	ENSECAG00000010639	UPF1	100	98.230	Equus_caballus
ENSCJAG00000019627	UPF1	100	89.534	ENSELUG00000020917	upf1	100	89.798	Esox_lucius
ENSCJAG00000019627	UPF1	100	90.949	ENSELUG00000012916	-	100	90.869	Esox_lucius
ENSCJAG00000019627	UPF1	100	99.558	ENSFCAG00000009757	UPF1	100	99.558	Felis_catus
ENSCJAG00000019627	UPF1	96	95.780	ENSFALG00000009312	UPF1	99	95.780	Ficedula_albicollis
ENSCJAG00000019627	UPF1	97	97.067	ENSFDAG00000014816	UPF1	100	99.525	Fukomys_damarensis
ENSCJAG00000019627	UPF1	85	93.648	ENSFHEG00000016276	-	96	93.829	Fundulus_heteroclitus
ENSCJAG00000019627	UPF1	100	87.467	ENSFHEG00000006428	upf1	100	87.467	Fundulus_heteroclitus
ENSCJAG00000019627	UPF1	100	91.254	ENSGMOG00000007541	upf1	100	91.696	Gadus_morhua
ENSCJAG00000019627	UPF1	100	96.726	ENSGALG00000003220	UPF1	100	96.726	Gallus_gallus
ENSCJAG00000019627	UPF1	100	91.335	ENSGAFG00000004831	upf1	100	91.247	Gambusia_affinis
ENSCJAG00000019627	UPF1	62	93.901	ENSGAFG00000015443	-	88	91.621	Gambusia_affinis
ENSCJAG00000019627	UPF1	100	96.198	ENSGAGG00000022217	UPF1	100	96.198	Gopherus_agassizii
ENSCJAG00000019627	UPF1	93	98.955	ENSGGOG00000002608	UPF1	99	98.955	Gorilla_gorilla
ENSCJAG00000019627	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSCJAG00000019627	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSCJAG00000019627	UPF1	100	99.114	ENSHGLG00000010900	UPF1	100	99.114	Heterocephalus_glaber_female
ENSCJAG00000019627	UPF1	96	95.753	ENSHGLG00100005904	UPF1	99	95.753	Heterocephalus_glaber_male
ENSCJAG00000019627	UPF1	100	90.628	ENSHCOG00000008918	upf1	100	92.823	Hippocampus_comes
ENSCJAG00000019627	UPF1	100	92.668	ENSIPUG00000005108	UPF1	100	93.021	Ictalurus_punctatus
ENSCJAG00000019627	UPF1	100	99.203	ENSSTOG00000009196	UPF1	100	99.203	Ictidomys_tridecemlineatus
ENSCJAG00000019627	UPF1	100	98.317	ENSJJAG00000023151	Upf1	100	98.317	Jaculus_jaculus
ENSCJAG00000019627	UPF1	100	91.784	ENSKMAG00000004962	upf1	100	91.696	Kryptolebias_marmoratus
ENSCJAG00000019627	UPF1	100	88.482	ENSLBEG00000014862	upf1	100	89.616	Labrus_bergylta
ENSCJAG00000019627	UPF1	100	91.519	ENSLBEG00000027848	-	100	91.519	Labrus_bergylta
ENSCJAG00000019627	UPF1	62	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSCJAG00000019627	UPF1	100	94.076	ENSLOCG00000002072	upf1	100	94.076	Lepisosteus_oculatus
ENSCJAG00000019627	UPF1	100	98.761	ENSLAFG00000014963	UPF1	100	98.761	Loxodonta_africana
ENSCJAG00000019627	UPF1	100	100.000	ENSMFAG00000037748	UPF1	100	100.000	Macaca_fascicularis
ENSCJAG00000019627	UPF1	100	100.000	ENSMMUG00000023286	UPF1	100	100.000	Macaca_mulatta
ENSCJAG00000019627	UPF1	100	100.000	ENSMNEG00000000046	UPF1	100	100.000	Macaca_nemestrina
ENSCJAG00000019627	UPF1	93	100.000	ENSMLEG00000028404	UPF1	100	100.000	Mandrillus_leucophaeus
ENSCJAG00000019627	UPF1	100	88.763	ENSMAMG00000006229	upf1	100	89.721	Mastacembelus_armatus
ENSCJAG00000019627	UPF1	100	90.901	ENSMAMG00000006231	-	100	91.343	Mastacembelus_armatus
ENSCJAG00000019627	UPF1	100	91.600	ENSMZEG00005016386	-	100	91.512	Maylandia_zebra
ENSCJAG00000019627	UPF1	100	88.860	ENSMZEG00005003489	upf1	100	90.026	Maylandia_zebra
ENSCJAG00000019627	UPF1	93	97.719	ENSMGAG00000004745	UPF1	100	97.719	Meleagris_gallopavo
ENSCJAG00000019627	UPF1	95	97.403	ENSMAUG00000011398	Upf1	97	97.403	Mesocricetus_auratus
ENSCJAG00000019627	UPF1	100	98.583	ENSMICG00000001659	UPF1	100	98.583	Microcebus_murinus
ENSCJAG00000019627	UPF1	100	98.406	ENSMOCG00000005699	Upf1	100	98.406	Microtus_ochrogaster
ENSCJAG00000019627	UPF1	93	91.548	ENSMMOG00000007537	-	99	91.643	Mola_mola
ENSCJAG00000019627	UPF1	100	89.646	ENSMMOG00000007881	upf1	100	90.097	Mola_mola
ENSCJAG00000019627	UPF1	100	98.147	ENSMODG00000003689	UPF1	100	98.147	Monodelphis_domestica
ENSCJAG00000019627	UPF1	100	89.823	ENSMALG00000000144	upf1	100	90.088	Monopterus_albus
ENSCJAG00000019627	UPF1	100	90.413	ENSMALG00000018100	-	100	90.413	Monopterus_albus
ENSCJAG00000019627	UPF1	100	98.494	MGP_CAROLIEiJ_G0031142	Upf1	100	98.494	Mus_caroli
ENSCJAG00000019627	UPF1	100	98.494	ENSMUSG00000058301	Upf1	100	98.494	Mus_musculus
ENSCJAG00000019627	UPF1	100	98.494	MGP_PahariEiJ_G0021607	Upf1	100	98.494	Mus_pahari
ENSCJAG00000019627	UPF1	100	98.494	MGP_SPRETEiJ_G0032260	Upf1	100	98.494	Mus_spretus
ENSCJAG00000019627	UPF1	100	98.673	ENSMPUG00000015516	UPF1	100	98.673	Mustela_putorius_furo
ENSCJAG00000019627	UPF1	99	98.224	ENSMLUG00000012122	UPF1	99	98.224	Myotis_lucifugus
ENSCJAG00000019627	UPF1	100	98.671	ENSNGAG00000024107	Upf1	100	98.671	Nannospalax_galili
ENSCJAG00000019627	UPF1	100	89.329	ENSNBRG00000022069	-	100	92.885	Neolamprologus_brichardi
ENSCJAG00000019627	UPF1	100	88.204	ENSNBRG00000000670	upf1	100	88.546	Neolamprologus_brichardi
ENSCJAG00000019627	UPF1	93	94.202	ENSNLEG00000006062	UPF1	100	94.202	Nomascus_leucogenys
ENSCJAG00000019627	UPF1	83	94.314	ENSMEUG00000014146	-	83	94.314	Notamacropus_eugenii
ENSCJAG00000019627	UPF1	93	90.589	ENSOPRG00000014018	UPF1	100	90.589	Ochotona_princeps
ENSCJAG00000019627	UPF1	100	97.874	ENSODEG00000012426	UPF1	100	97.874	Octodon_degus
ENSCJAG00000019627	UPF1	100	89.121	ENSONIG00000010452	upf1	100	90.289	Oreochromis_niloticus
ENSCJAG00000019627	UPF1	100	91.689	ENSONIG00000012729	-	100	91.600	Oreochromis_niloticus
ENSCJAG00000019627	UPF1	100	97.350	ENSOANG00000004568	UPF1	100	97.350	Ornithorhynchus_anatinus
ENSCJAG00000019627	UPF1	100	91.519	ENSORLG00000008453	upf1	100	91.519	Oryzias_latipes
ENSCJAG00000019627	UPF1	100	91.350	ENSORLG00020014758	upf1	100	91.350	Oryzias_latipes_hni
ENSCJAG00000019627	UPF1	100	91.350	ENSORLG00015010165	upf1	100	91.350	Oryzias_latipes_hsok
ENSCJAG00000019627	UPF1	100	91.608	ENSOMEG00000003665	upf1	100	91.519	Oryzias_melastigma
ENSCJAG00000019627	UPF1	100	98.937	ENSOGAG00000012866	UPF1	100	98.937	Otolemur_garnettii
ENSCJAG00000019627	UPF1	96	97.240	ENSOARG00000010739	UPF1	100	97.240	Ovis_aries
ENSCJAG00000019627	UPF1	95	99.065	ENSPPAG00000043884	UPF1	97	99.065	Pan_paniscus
ENSCJAG00000019627	UPF1	100	99.558	ENSPPRG00000023470	UPF1	100	99.558	Panthera_pardus
ENSCJAG00000019627	UPF1	93	96.575	ENSPTIG00000010159	UPF1	99	96.575	Panthera_tigris_altaica
ENSCJAG00000019627	UPF1	100	100.000	ENSPTRG00000010721	UPF1	100	100.000	Pan_troglodytes
ENSCJAG00000019627	UPF1	100	100.000	ENSPANG00000008847	UPF1	100	100.000	Papio_anubis
ENSCJAG00000019627	UPF1	91	93.816	ENSPKIG00000006069	upf1	99	91.386	Paramormyrops_kingsleyae
ENSCJAG00000019627	UPF1	68	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSCJAG00000019627	UPF1	100	88.370	ENSPMGG00000017327	upf1	100	88.478	Periophthalmus_magnuspinnatus
ENSCJAG00000019627	UPF1	100	98.583	ENSPEMG00000001085	Upf1	100	98.583	Peromyscus_maniculatus_bairdii
ENSCJAG00000019627	UPF1	100	86.726	ENSPMAG00000001206	upf1	100	86.167	Petromyzon_marinus
ENSCJAG00000019627	UPF1	100	97.699	ENSPCIG00000006156	UPF1	100	97.699	Phascolarctos_cinereus
ENSCJAG00000019627	UPF1	100	91.424	ENSPLAG00000016232	-	100	91.335	Poecilia_latipinna
ENSCJAG00000019627	UPF1	100	88.431	ENSPLAG00000018155	-	100	88.344	Poecilia_latipinna
ENSCJAG00000019627	UPF1	100	91.512	ENSPMEG00000016319	-	100	91.424	Poecilia_mexicana
ENSCJAG00000019627	UPF1	100	88.967	ENSPMEG00000011443	-	100	88.879	Poecilia_mexicana
ENSCJAG00000019627	UPF1	100	91.247	ENSPREG00000011247	-	100	91.158	Poecilia_reticulata
ENSCJAG00000019627	UPF1	100	88.869	ENSPREG00000009940	upf1	100	88.869	Poecilia_reticulata
ENSCJAG00000019627	UPF1	100	95.040	ENSPPYG00000009752	UPF1	100	95.040	Pongo_abelii
ENSCJAG00000019627	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSCJAG00000019627	UPF1	100	99.469	ENSPCOG00000023813	UPF1	100	99.469	Propithecus_coquereli
ENSCJAG00000019627	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSCJAG00000019627	UPF1	100	88.860	ENSPNYG00000003694	upf1	100	90.026	Pundamilia_nyererei
ENSCJAG00000019627	UPF1	100	91.600	ENSPNYG00000016731	-	100	91.512	Pundamilia_nyererei
ENSCJAG00000019627	UPF1	100	92.226	ENSPNAG00000025614	upf1	100	92.668	Pygocentrus_nattereri
ENSCJAG00000019627	UPF1	100	98.494	ENSRNOG00000020134	Upf1	100	98.494	Rattus_norvegicus
ENSCJAG00000019627	UPF1	95	96.916	ENSRBIG00000013894	UPF1	98	98.593	Rhinopithecus_bieti
ENSCJAG00000019627	UPF1	95	99.252	ENSRROG00000040935	UPF1	99	99.252	Rhinopithecus_roxellana
ENSCJAG00000019627	UPF1	76	55.309	YMR080C	NAM7	86	55.309	Saccharomyces_cerevisiae
ENSCJAG00000019627	UPF1	95	98.419	ENSSBOG00000023632	UPF1	98	98.419	Saimiri_boliviensis_boliviensis
ENSCJAG00000019627	UPF1	93	98.860	ENSSHAG00000010499	UPF1	100	98.860	Sarcophilus_harrisii
ENSCJAG00000019627	UPF1	100	94.076	ENSSFOG00015021095	upf1	99	96.198	Scleropages_formosus
ENSCJAG00000019627	UPF1	100	88.133	ENSSMAG00000005055	upf1	100	88.928	Scophthalmus_maximus
ENSCJAG00000019627	UPF1	100	91.696	ENSSMAG00000021018	-	100	91.696	Scophthalmus_maximus
ENSCJAG00000019627	UPF1	100	89.024	ENSSDUG00000013320	upf1	100	89.983	Seriola_dumerili
ENSCJAG00000019627	UPF1	100	91.873	ENSSDUG00000009629	-	100	91.873	Seriola_dumerili
ENSCJAG00000019627	UPF1	100	91.873	ENSSLDG00000006878	-	100	91.873	Seriola_lalandi_dorsalis
ENSCJAG00000019627	UPF1	100	89.807	ENSSLDG00000020868	upf1	100	90.263	Seriola_lalandi_dorsalis
ENSCJAG00000019627	UPF1	100	96.106	ENSSPUG00000010538	UPF1	100	96.106	Sphenodon_punctatus
ENSCJAG00000019627	UPF1	100	88.329	ENSSPAG00000000003	upf1	100	88.272	Stegastes_partitus
ENSCJAG00000019627	UPF1	100	91.866	ENSSPAG00000011521	-	100	91.777	Stegastes_partitus
ENSCJAG00000019627	UPF1	100	99.115	ENSSSCG00000039301	UPF1	100	99.115	Sus_scrofa
ENSCJAG00000019627	UPF1	83	89.597	ENSTGUG00000001057	UPF1	100	95.428	Taeniopygia_guttata
ENSCJAG00000019627	UPF1	100	90.539	ENSTRUG00000005131	-	100	90.539	Takifugu_rubripes
ENSCJAG00000019627	UPF1	100	89.558	ENSTRUG00000000150	upf1	100	89.558	Takifugu_rubripes
ENSCJAG00000019627	UPF1	100	94.425	ENSTTRG00000011544	UPF1	100	93.805	Tursiops_truncatus
ENSCJAG00000019627	UPF1	100	98.584	ENSUAMG00000007093	UPF1	100	98.584	Ursus_americanus
ENSCJAG00000019627	UPF1	96	97.961	ENSUMAG00000006652	UPF1	99	98.769	Ursus_maritimus
ENSCJAG00000019627	UPF1	100	98.673	ENSVVUG00000007797	UPF1	100	98.673	Vulpes_vulpes
ENSCJAG00000019627	UPF1	100	82.379	ENSXETG00000013602	upf1	100	82.379	Xenopus_tropicalis
ENSCJAG00000019627	UPF1	92	93.858	ENSXCOG00000005764	-	100	93.858	Xiphophorus_couchianus
ENSCJAG00000019627	UPF1	97	88.757	ENSXCOG00000015275	-	96	88.665	Xiphophorus_couchianus
ENSCJAG00000019627	UPF1	100	91.335	ENSXMAG00000002540	-	100	91.247	Xiphophorus_maculatus
ENSCJAG00000019627	UPF1	100	89.036	ENSXMAG00000001703	-	100	88.948	Xiphophorus_maculatus