EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000020677 (Gene tree)
Gene ID: 100396225
Gene Symbol: TNRC6A
Alias: CAGH26|GW182|KIAA1460|TNRC6
Full Name: trinucleotide repeat containing 6A
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 105241 bases
Position: chrNTIC01004446.1:18370160-18475400
Accession: 100396225
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000042349	Ago_hook	PF10427.9	2.6e-19	1	1
ENSCJAP00000050403	Ago_hook	PF10427.9	4.5e-19	1	1
ENSCJAP00000038462	Ago_hook	PF10427.9	6.4e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000060672	TNRC6A-202	9081	XM_017978817	ENSCJAP00000050403	1965 (aa)	XP_017834306	F7DRC6
ENSCJAT00000053179	TNRC6A-204	8967	-	ENSCJAP00000050146	1927 (aa)	-	F7H4C1
ENSCJAT00000063088	TNRC6A-201	9144	-	ENSCJAP00000042349	1986 (aa)	-	F6VRI3
ENSCJAT00000040636	TNRC6A-203	8997	-	ENSCJAP00000038462	1937 (aa)	-	F7IQT7

Gene Model

Click here to download ENSCJAG00000020677's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000020677's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000020677	TNRC6A	85	49.711	ENSCJAG00000002732	TNRC6B	99	49.725
ENSCJAG00000020677	TNRC6A	92	49.629	ENSCJAG00000019431	TNRC6C	99	42.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000020677	TNRC6A	100	98.780	ENSG00000090905	TNRC6A	100	98.780	Homo_sapiens
ENSCJAG00000020677	TNRC6A	98	96.096	ENSAMEG00000009333	TNRC6A	100	96.096	Ailuropoda_melanoleuca
ENSCJAG00000020677	TNRC6A	97	81.205	ENSAPLG00000009978	TNRC6A	100	81.205	Anas_platyrhynchos
ENSCJAG00000020677	TNRC6A	100	54.309	ENSACAG00000011857	TNRC6A	100	56.332	Anolis_carolinensis
ENSCJAG00000020677	TNRC6A	100	98.931	ENSANAG00000025252	TNRC6A	100	98.931	Aotus_nancymaae
ENSCJAG00000020677	TNRC6A	90	55.933	ENSAMXG00000019919	tnrc6a	99	56.585	Astyanax_mexicanus
ENSCJAG00000020677	TNRC6A	100	93.711	ENSBTAG00000017999	TNRC6A	99	94.357	Bos_taurus
ENSCJAG00000020677	TNRC6A	99	96.136	ENSCAFG00000017531	TNRC6A	100	96.136	Canis_familiaris
ENSCJAG00000020677	TNRC6A	98	94.038	ENSCAFG00020021160	TNRC6A	99	94.676	Canis_lupus_dingo
ENSCJAG00000020677	TNRC6A	100	93.402	ENSCHIG00000019448	TNRC6A	100	98.182	Capra_hircus
ENSCJAG00000020677	TNRC6A	100	96.392	ENSTSYG00000012711	TNRC6A	100	96.392	Carlito_syrichta
ENSCJAG00000020677	TNRC6A	99	94.479	ENSCPOG00000036684	TNRC6A	100	94.479	Cavia_porcellus
ENSCJAG00000020677	TNRC6A	100	99.237	ENSCCAG00000033664	TNRC6A	100	99.237	Cebus_capucinus
ENSCJAG00000020677	TNRC6A	99	97.817	ENSCATG00000019284	TNRC6A	99	97.817	Cercocebus_atys
ENSCJAG00000020677	TNRC6A	100	90.361	ENSCLAG00000010217	TNRC6A	99	90.068	Chinchilla_lanigera
ENSCJAG00000020677	TNRC6A	100	98.730	ENSCSAG00000006561	TNRC6A	100	98.730	Chlorocebus_sabaeus
ENSCJAG00000020677	TNRC6A	95	91.763	ENSCHOG00000009374	TNRC6A	95	91.763	Choloepus_hoffmanni
ENSCJAG00000020677	TNRC6A	89	81.986	ENSCPBG00000001881	TNRC6A	99	81.986	Chrysemys_picta_bellii
ENSCJAG00000020677	TNRC6A	100	98.730	ENSCANG00000041549	TNRC6A	100	98.730	Colobus_angolensis_palliatus
ENSCJAG00000020677	TNRC6A	100	92.890	ENSCGRG00001015021	Tnrc6a	99	93.805	Cricetulus_griseus_chok1gshd
ENSCJAG00000020677	TNRC6A	99	92.264	ENSCGRG00000013351	Tnrc6a	99	91.181	Cricetulus_griseus_crigri
ENSCJAG00000020677	TNRC6A	90	56.141	ENSDARG00000079688	tnrc6a	99	56.558	Danio_rerio
ENSCJAG00000020677	TNRC6A	98	93.247	ENSDNOG00000013989	TNRC6A	99	93.247	Dasypus_novemcinctus
ENSCJAG00000020677	TNRC6A	98	85.000	ENSETEG00000014658	TNRC6A	99	85.000	Echinops_telfairi
ENSCJAG00000020677	TNRC6A	100	95.937	ENSEASG00005017693	TNRC6A	100	98.182	Equus_asinus_asinus
ENSCJAG00000020677	TNRC6A	100	95.937	ENSECAG00000025056	TNRC6A	100	98.182	Equus_caballus
ENSCJAG00000020677	TNRC6A	98	89.485	ENSEEUG00000004530	TNRC6A	99	89.433	Erinaceus_europaeus
ENSCJAG00000020677	TNRC6A	100	94.817	ENSFCAG00000025236	TNRC6A	100	94.817	Felis_catus
ENSCJAG00000020677	TNRC6A	99	78.195	ENSFALG00000003757	TNRC6A	99	79.188	Ficedula_albicollis
ENSCJAG00000020677	TNRC6A	89	82.075	ENSGALG00000006068	TNRC6A	99	82.478	Gallus_gallus
ENSCJAG00000020677	TNRC6A	89	81.196	ENSGAGG00000023209	TNRC6A	99	81.484	Gopherus_agassizii
ENSCJAG00000020677	TNRC6A	99	98.514	ENSGGOG00000005137	TNRC6A	99	98.514	Gorilla_gorilla
ENSCJAG00000020677	TNRC6A	99	92.761	ENSHGLG00000012474	-	100	91.727	Heterocephalus_glaber_female
ENSCJAG00000020677	TNRC6A	93	74.352	ENSHGLG00000007368	-	99	69.731	Heterocephalus_glaber_female
ENSCJAG00000020677	TNRC6A	99	92.037	ENSHGLG00100012496	-	100	91.210	Heterocephalus_glaber_male
ENSCJAG00000020677	TNRC6A	99	95.831	ENSSTOG00000023394	TNRC6A	99	95.679	Ictidomys_tridecemlineatus
ENSCJAG00000020677	TNRC6A	97	68.705	ENSLACG00000006277	TNRC6A	100	69.733	Latimeria_chalumnae
ENSCJAG00000020677	TNRC6A	99	83.223	ENSLOCG00000005517	tnrc6a	93	83.223	Lepisosteus_oculatus
ENSCJAG00000020677	TNRC6A	96	93.747	ENSLAFG00000004209	TNRC6A	99	93.693	Loxodonta_africana
ENSCJAG00000020677	TNRC6A	97	97.815	ENSMFAG00000003824	TNRC6A	99	97.815	Macaca_fascicularis
ENSCJAG00000020677	TNRC6A	100	98.934	ENSMMUG00000020428	TNRC6A	100	98.934	Macaca_mulatta
ENSCJAG00000020677	TNRC6A	100	98.732	ENSMNEG00000034854	TNRC6A	100	98.732	Macaca_nemestrina
ENSCJAG00000020677	TNRC6A	100	95.111	ENSMLEG00000042737	TNRC6A	99	95.111	Mandrillus_leucophaeus
ENSCJAG00000020677	TNRC6A	99	79.183	ENSMGAG00000006455	TNRC6A	99	79.788	Meleagris_gallopavo
ENSCJAG00000020677	TNRC6A	100	92.581	ENSMAUG00000012750	Tnrc6a	100	91.499	Mesocricetus_auratus
ENSCJAG00000020677	TNRC6A	100	97.510	ENSMICG00000030685	TNRC6A	100	97.510	Microcebus_murinus
ENSCJAG00000020677	TNRC6A	100	93.402	ENSMOCG00000000152	Tnrc6a	100	92.062	Microtus_ochrogaster
ENSCJAG00000020677	TNRC6A	99	80.376	ENSMODG00000016348	TNRC6A	99	81.315	Monodelphis_domestica
ENSCJAG00000020677	TNRC6A	99	91.576	MGP_CAROLIEiJ_G0030425	Tnrc6a	100	94.568	Mus_caroli
ENSCJAG00000020677	TNRC6A	100	92.268	ENSMUSG00000052707	Tnrc6a	99	94.925	Mus_musculus
ENSCJAG00000020677	TNRC6A	99	92.412	MGP_PahariEiJ_G0013635	Tnrc6a	100	95.211	Mus_pahari
ENSCJAG00000020677	TNRC6A	100	93.343	MGP_SPRETEiJ_G0031539	Tnrc6a	100	94.925	Mus_spretus
ENSCJAG00000020677	TNRC6A	96	83.636	ENSMPUG00000012324	TNRC6A	100	83.583	Mustela_putorius_furo
ENSCJAG00000020677	TNRC6A	97	92.215	ENSMLUG00000002701	TNRC6A	100	92.215	Myotis_lucifugus
ENSCJAG00000020677	TNRC6A	99	93.863	ENSNGAG00000020702	Tnrc6a	100	92.677	Nannospalax_galili
ENSCJAG00000020677	TNRC6A	98	95.986	ENSNLEG00000011851	TNRC6A	99	96.273	Nomascus_leucogenys
ENSCJAG00000020677	TNRC6A	77	89.037	ENSMEUG00000015959	-	77	89.037	Notamacropus_eugenii
ENSCJAG00000020677	TNRC6A	96	99.627	ENSOPRG00000005819	TNRC6A	96	99.627	Ochotona_princeps
ENSCJAG00000020677	TNRC6A	99	88.177	ENSODEG00000012802	TNRC6A	99	87.083	Octodon_degus
ENSCJAG00000020677	TNRC6A	87	82.966	ENSOANG00000007672	TNRC6A	99	82.964	Ornithorhynchus_anatinus
ENSCJAG00000020677	TNRC6A	97	92.585	ENSOCUG00000004325	TNRC6A	100	92.533	Oryctolagus_cuniculus
ENSCJAG00000020677	TNRC6A	99	96.569	ENSOGAG00000006666	TNRC6A	100	96.569	Otolemur_garnettii
ENSCJAG00000020677	TNRC6A	99	93.769	ENSOARG00000017950	TNRC6A	98	95.399	Ovis_aries
ENSCJAG00000020677	TNRC6A	99	98.730	ENSPPAG00000028379	TNRC6A	100	98.730	Pan_paniscus
ENSCJAG00000020677	TNRC6A	100	94.817	ENSPPRG00000005861	TNRC6A	100	94.817	Panthera_pardus
ENSCJAG00000020677	TNRC6A	99	94.201	ENSPTIG00000006346	TNRC6A	99	93.998	Panthera_tigris_altaica
ENSCJAG00000020677	TNRC6A	99	97.188	ENSPTRG00000007898	TNRC6A	99	98.439	Pan_troglodytes
ENSCJAG00000020677	TNRC6A	100	96.750	ENSPANG00000018523	TNRC6A	100	96.750	Papio_anubis
ENSCJAG00000020677	TNRC6A	87	75.862	ENSPKIG00000012859	tnrc6a	96	79.459	Paramormyrops_kingsleyae
ENSCJAG00000020677	TNRC6A	75	77.432	ENSPSIG00000003965	TNRC6A	100	77.432	Pelodiscus_sinensis
ENSCJAG00000020677	TNRC6A	100	92.990	ENSPEMG00000016318	Tnrc6a	100	91.959	Peromyscus_maniculatus_bairdii
ENSCJAG00000020677	TNRC6A	97	83.186	ENSPCIG00000012106	TNRC6A	100	83.134	Phascolarctos_cinereus
ENSCJAG00000020677	TNRC6A	99	98.220	ENSPPYG00000007202	TNRC6A	100	98.220	Pongo_abelii
ENSCJAG00000020677	TNRC6A	95	100.000	ENSPCAG00000008260	TNRC6A	94	100.000	Procavia_capensis
ENSCJAG00000020677	TNRC6A	100	95.122	ENSPCOG00000010134	TNRC6A	100	95.122	Propithecus_coquereli
ENSCJAG00000020677	TNRC6A	89	70.484	ENSPVAG00000012066	TNRC6A	99	70.256	Pteropus_vampyrus
ENSCJAG00000020677	TNRC6A	100	92.942	ENSRNOG00000024737	Tnrc6a	100	92.581	Rattus_norvegicus
ENSCJAG00000020677	TNRC6A	99	98.660	ENSRBIG00000014222	TNRC6A	100	98.660	Rhinopithecus_bieti
ENSCJAG00000020677	TNRC6A	100	98.476	ENSRROG00000032360	TNRC6A	100	98.476	Rhinopithecus_roxellana
ENSCJAG00000020677	TNRC6A	98	97.862	ENSSBOG00000036197	TNRC6A	100	99.766	Saimiri_boliviensis_boliviensis
ENSCJAG00000020677	TNRC6A	89	83.419	ENSSHAG00000008811	TNRC6A	99	83.875	Sarcophilus_harrisii
ENSCJAG00000020677	TNRC6A	87	65.569	ENSSFOG00015008920	tnrc6a	98	78.004	Scleropages_formosus
ENSCJAG00000020677	TNRC6A	72	83.333	ENSSARG00000002479	TNRC6A	90	82.790	Sorex_araneus
ENSCJAG00000020677	TNRC6A	90	78.052	ENSSPUG00000010525	TNRC6A	100	78.555	Sphenodon_punctatus
ENSCJAG00000020677	TNRC6A	100	94.948	ENSSSCG00000038870	TNRC6A	100	97.601	Sus_scrofa
ENSCJAG00000020677	TNRC6A	99	78.143	ENSTGUG00000006142	TNRC6A	100	77.846	Taeniopygia_guttata
ENSCJAG00000020677	TNRC6A	98	93.961	ENSTBEG00000014965	TNRC6A	99	93.906	Tupaia_belangeri
ENSCJAG00000020677	TNRC6A	94	97.843	ENSTTRG00000002008	TNRC6A	93	97.843	Tursiops_truncatus
ENSCJAG00000020677	TNRC6A	78	94.342	ENSUAMG00000006656	-	93	94.342	Ursus_americanus
ENSCJAG00000020677	TNRC6A	98	94.935	ENSUMAG00000008274	TNRC6A	100	97.289	Ursus_maritimus
ENSCJAG00000020677	TNRC6A	57	85.271	ENSVPAG00000010764	-	57	85.271	Vicugna_pacos
ENSCJAG00000020677	TNRC6A	99	96.156	ENSVVUG00000005380	TNRC6A	100	96.136	Vulpes_vulpes
ENSCJAG00000020677	TNRC6A	94	65.416	ENSXETG00000030437	TNRC6A	99	65.497	Xenopus_tropicalis