EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000020681 (Gene tree)
Gene ID: 103792339
Gene Symbol: TRIM39
Alias: RNF23
Full Name: tripartite motif containing 39
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 19389 bases
Position: chrNTIC01022223.1:138112700-138132088
Accession: 10065
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000038467	Rpr2	PF04032.16	8.8e-17	1	1
ENSCJAP00000038466	Rpr2	PF04032.16	2.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000040641	TRIM39-201	1512	-	ENSCJAP00000038466	503 (aa)	-	F7IQT3
ENSCJAT00000040642	TRIM39-202	501	-	ENSCJAP00000038467	166 (aa)	-	F7IQT2
ENSCJAT00000040635	TRIM39-203	1414	-	ENSCJAP00000038461	424 (aa)	-	F7IQT8
ENSCJAT00000073355	TRIM39-205	1539	-	ENSCJAP00000064340	512 (aa)	-	A0A2R8MSH2
ENSCJAT00000081853	TRIM39-204	1528	-	ENSCJAP00000060248	369 (aa)	-	A0A2R8MIM6

Gene Model

Click here to download ENSCJAG00000020681's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000020681's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000020681	TRIM39	100	99.006	ENSANAG00000032075	TRIM39	100	99.006	Aotus_nancymaae
ENSCJAG00000020681	TRIM39	100	98.807	ENSCCAG00000036784	TRIM39	100	98.807	Cebus_capucinus
ENSCJAG00000020681	TRIM39	100	97.813	ENSCATG00000044044	TRIM39	100	97.813	Cercocebus_atys
ENSCJAG00000020681	TRIM39	100	97.416	ENSGGOG00000016403	TRIM39	100	97.416	Gorilla_gorilla
ENSCJAG00000020681	TRIM39	100	98.012	ENSMFAG00000046182	TRIM39	100	98.012	Macaca_fascicularis
ENSCJAG00000020681	TRIM39	100	98.012	ENSMMUG00000011682	RPP21	100	98.012	Macaca_mulatta
ENSCJAG00000020681	TRIM39	100	97.813	ENSMNEG00000034999	TRIM39	100	97.813	Macaca_nemestrina
ENSCJAG00000020681	TRIM39	100	98.012	ENSMLEG00000034263	TRIM39	100	98.012	Mandrillus_leucophaeus
ENSCJAG00000020681	TRIM39	100	97.416	ENSNLEG00000005026	TRIM39	100	97.416	Nomascus_leucogenys
ENSCJAG00000020681	TRIM39	100	97.614	ENSPPAG00000040674	TRIM39	100	97.614	Pan_paniscus
ENSCJAG00000020681	TRIM39	100	97.614	ENSPTRG00000017923	TRIM39	100	97.614	Pan_troglodytes
ENSCJAG00000020681	TRIM39	100	97.813	ENSPANG00000000655	TRIM39	100	97.813	Papio_anubis
ENSCJAG00000020681	TRIM39	100	98.012	ENSRBIG00000040889	TRIM39	100	98.012	Rhinopithecus_bieti
ENSCJAG00000020681	TRIM39	100	98.012	ENSRROG00000036496	TRIM39	100	98.012	Rhinopithecus_roxellana