EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000020685 (Gene tree)
Gene ID: 100394499
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 119047 bases
Position: chrNTIC01036611.1:153908431-154027477
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000038463	Upf2	PF04050.14	6.5e-33	1	1
ENSCJAP00000042256	Upf2	PF04050.14	6.6e-33	1	1
ENSCJAP00000042200	Upf2	PF04050.14	7.3e-33	1	1
ENSCJAP00000026290	Upf2	PF04050.14	1.1e-32	1	1
ENSCJAP00000026290	MIF4G	PF02854.19	1.5e-80	1	3
ENSCJAP00000026290	MIF4G	PF02854.19	1.5e-80	2	3
ENSCJAP00000026290	MIF4G	PF02854.19	1.5e-80	3	3
ENSCJAP00000038463	MIF4G	PF02854.19	1.6e-80	1	3
ENSCJAP00000038463	MIF4G	PF02854.19	1.6e-80	2	3
ENSCJAP00000038463	MIF4G	PF02854.19	1.6e-80	3	3
ENSCJAP00000042256	MIF4G	PF02854.19	1.6e-80	1	3
ENSCJAP00000042256	MIF4G	PF02854.19	1.6e-80	2	3
ENSCJAP00000042256	MIF4G	PF02854.19	1.6e-80	3	3
ENSCJAP00000042200	MIF4G	PF02854.19	3.1e-69	1	3
ENSCJAP00000042200	MIF4G	PF02854.19	3.1e-69	2	3
ENSCJAP00000042200	MIF4G	PF02854.19	3.1e-69	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000040638	UPF2-201	5699	-	ENSCJAP00000038463	1271 (aa)	-	F7IQT6
ENSCJAT00000062507	UPF2-203	5461	-	ENSCJAP00000042200	1233 (aa)	-	F7BAU7
ENSCJAT00000058445	UPF2-202	5578	-	ENSCJAP00000042256	1272 (aa)	-	F7AQX9
ENSCJAT00000027785	UPF2-204	3765	-	ENSCJAP00000026290	1254 (aa)	-	F7INJ8

Gene Model

Click here to download ENSCJAG00000020685's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03013	RNA transport	KEGG
cjc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000020685's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000020685	UPF2	100	99.057	ENSG00000151461	UPF2	100	99.057	Homo_sapiens
ENSCJAG00000020685	UPF2	99	77.525	ENSAPOG00000015837	UPF2	100	77.645	Acanthochromis_polyacanthus
ENSCJAG00000020685	UPF2	100	97.877	ENSAMEG00000004586	UPF2	100	97.877	Ailuropoda_melanoleuca
ENSCJAG00000020685	UPF2	99	81.641	ENSACIG00000018078	UPF2	100	82.031	Amphilophus_citrinellus
ENSCJAG00000020685	UPF2	100	81.669	ENSAOCG00000016766	UPF2	100	82.137	Amphiprion_ocellaris
ENSCJAG00000020685	UPF2	100	81.747	ENSAPEG00000019084	UPF2	100	82.215	Amphiprion_percula
ENSCJAG00000020685	UPF2	100	81.726	ENSATEG00000021677	UPF2	99	82.165	Anabas_testudineus
ENSCJAG00000020685	UPF2	100	86.557	ENSAPLG00000010287	UPF2	90	91.225	Anas_platyrhynchos
ENSCJAG00000020685	UPF2	100	91.267	ENSACAG00000009259	UPF2	100	91.267	Anolis_carolinensis
ENSCJAG00000020685	UPF2	99	90.165	ENSANAG00000028451	UPF2	99	90.165	Aotus_nancymaae
ENSCJAG00000020685	UPF2	100	81.045	ENSACLG00000012696	UPF2	100	82.371	Astatotilapia_calliptera
ENSCJAG00000020685	UPF2	99	82.188	ENSAMXG00000013700	UPF2	99	81.925	Astyanax_mexicanus
ENSCJAG00000020685	UPF2	100	97.563	ENSBTAG00000000288	UPF2	100	97.563	Bos_taurus
ENSCJAG00000020685	UPF2	62	30.184	WBGene00004881	smg-3	69	30.061	Caenorhabditis_elegans
ENSCJAG00000020685	UPF2	100	97.720	ENSCAFG00000004839	UPF2	100	97.720	Canis_familiaris
ENSCJAG00000020685	UPF2	99	96.885	ENSCAFG00020005882	UPF2	100	96.885	Canis_lupus_dingo
ENSCJAG00000020685	UPF2	100	97.642	ENSCHIG00000020359	UPF2	100	97.642	Capra_hircus
ENSCJAG00000020685	UPF2	100	97.720	ENSTSYG00000000935	UPF2	100	97.720	Carlito_syrichta
ENSCJAG00000020685	UPF2	92	87.188	ENSCAPG00000016658	UPF2	100	87.010	Cavia_aperea
ENSCJAG00000020685	UPF2	99	95.638	ENSCPOG00000008809	UPF2	99	95.638	Cavia_porcellus
ENSCJAG00000020685	UPF2	100	93.942	ENSCCAG00000035991	UPF2	100	93.942	Cebus_capucinus
ENSCJAG00000020685	UPF2	100	99.292	ENSCATG00000032679	UPF2	100	99.292	Cercocebus_atys
ENSCJAG00000020685	UPF2	100	97.168	ENSCLAG00000011434	UPF2	100	97.168	Chinchilla_lanigera
ENSCJAG00000020685	UPF2	100	99.371	ENSCSAG00000013372	UPF2	100	99.371	Chlorocebus_sabaeus
ENSCJAG00000020685	UPF2	87	99.554	ENSCHOG00000000422	UPF2	89	99.554	Choloepus_hoffmanni
ENSCJAG00000020685	UPF2	99	92.671	ENSCPBG00000027823	UPF2	100	92.435	Chrysemys_picta_bellii
ENSCJAG00000020685	UPF2	79	48.917	ENSCSAVG00000007772	-	79	50.191	Ciona_savignyi
ENSCJAG00000020685	UPF2	99	93.666	ENSCANG00000040396	UPF2	100	93.824	Colobus_angolensis_palliatus
ENSCJAG00000020685	UPF2	100	97.406	ENSCGRG00001019347	Upf2	100	97.406	Cricetulus_griseus_chok1gshd
ENSCJAG00000020685	UPF2	100	97.406	ENSCGRG00000017993	Upf2	100	97.406	Cricetulus_griseus_crigri
ENSCJAG00000020685	UPF2	91	80.776	ENSCSEG00000003520	UPF2	80	79.604	Cynoglossus_semilaevis
ENSCJAG00000020685	UPF2	99	81.304	ENSCVAG00000006167	UPF2	100	81.697	Cyprinodon_variegatus
ENSCJAG00000020685	UPF2	100	97.642	ENSDNOG00000018160	UPF2	100	97.642	Dasypus_novemcinctus
ENSCJAG00000020685	UPF2	100	96.855	ENSDORG00000002478	Upf2	100	96.855	Dipodomys_ordii
ENSCJAG00000020685	UPF2	89	36.281	FBgn0029992	Upf2	80	47.297	Drosophila_melanogaster
ENSCJAG00000020685	UPF2	74	100.000	ENSETEG00000011583	-	67	100.000	Echinops_telfairi
ENSCJAG00000020685	UPF2	80	63.134	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSCJAG00000020685	UPF2	100	97.797	ENSEASG00005019274	UPF2	100	98.765	Equus_asinus_asinus
ENSCJAG00000020685	UPF2	100	97.876	ENSECAG00000017022	UPF2	100	97.876	Equus_caballus
ENSCJAG00000020685	UPF2	82	95.208	ENSEEUG00000007819	UPF2	82	95.208	Erinaceus_europaeus
ENSCJAG00000020685	UPF2	99	81.797	ENSELUG00000012014	UPF2	100	81.493	Esox_lucius
ENSCJAG00000020685	UPF2	100	99.448	ENSFCAG00000005785	UPF2	100	97.563	Felis_catus
ENSCJAG00000020685	UPF2	100	92.447	ENSFALG00000001889	UPF2	98	92.447	Ficedula_albicollis
ENSCJAG00000020685	UPF2	100	97.089	ENSFDAG00000014348	UPF2	100	97.089	Fukomys_damarensis
ENSCJAG00000020685	UPF2	99	81.962	ENSFHEG00000009826	UPF2	99	82.488	Fundulus_heteroclitus
ENSCJAG00000020685	UPF2	91	83.938	ENSGMOG00000005557	UPF2	100	79.703	Gadus_morhua
ENSCJAG00000020685	UPF2	100	92.767	ENSGALG00000033772	UPF2	100	92.767	Gallus_gallus
ENSCJAG00000020685	UPF2	100	79.641	ENSGAFG00000020867	UPF2	100	81.513	Gambusia_affinis
ENSCJAG00000020685	UPF2	90	84.297	ENSGACG00000001080	UPF2	100	82.031	Gasterosteus_aculeatus
ENSCJAG00000020685	UPF2	100	92.211	ENSGAGG00000002700	UPF2	100	92.211	Gopherus_agassizii
ENSCJAG00000020685	UPF2	100	99.135	ENSGGOG00000001479	UPF2	100	99.135	Gorilla_gorilla
ENSCJAG00000020685	UPF2	100	80.889	ENSHBUG00000004249	UPF2	100	82.344	Haplochromis_burtoni
ENSCJAG00000020685	UPF2	99	86.142	ENSHGLG00000003822	-	99	85.276	Heterocephalus_glaber_female
ENSCJAG00000020685	UPF2	100	97.089	ENSHGLG00000015176	-	100	97.089	Heterocephalus_glaber_female
ENSCJAG00000020685	UPF2	99	94.169	ENSHGLG00100010036	UPF2	100	93.696	Heterocephalus_glaber_male
ENSCJAG00000020685	UPF2	100	79.720	ENSHCOG00000004025	UPF2	99	79.720	Hippocampus_comes
ENSCJAG00000020685	UPF2	100	81.123	ENSIPUG00000015524	UPF2	100	80.718	Ictalurus_punctatus
ENSCJAG00000020685	UPF2	100	97.327	ENSSTOG00000013075	UPF2	100	97.327	Ictidomys_tridecemlineatus
ENSCJAG00000020685	UPF2	100	95.047	ENSJJAG00000004913	Upf2	100	94.099	Jaculus_jaculus
ENSCJAG00000020685	UPF2	99	81.363	ENSKMAG00000001071	UPF2	100	81.868	Kryptolebias_marmoratus
ENSCJAG00000020685	UPF2	100	80.808	ENSLBEG00000016394	-	99	82.490	Labrus_bergylta
ENSCJAG00000020685	UPF2	81	79.862	ENSLBEG00000000728	-	93	82.024	Labrus_bergylta
ENSCJAG00000020685	UPF2	99	78.527	ENSLACG00000015945	UPF2	100	78.762	Latimeria_chalumnae
ENSCJAG00000020685	UPF2	99	85.894	ENSLOCG00000015698	UPF2	100	85.816	Lepisosteus_oculatus
ENSCJAG00000020685	UPF2	100	99.214	ENSMFAG00000043865	UPF2	100	99.214	Macaca_fascicularis
ENSCJAG00000020685	UPF2	100	99.214	ENSMMUG00000008241	UPF2	100	99.214	Macaca_mulatta
ENSCJAG00000020685	UPF2	82	98.829	ENSMNEG00000008062	UPF2	100	98.829	Macaca_nemestrina
ENSCJAG00000020685	UPF2	99	97.385	ENSMLEG00000036120	UPF2	100	99.517	Mandrillus_leucophaeus
ENSCJAG00000020685	UPF2	100	81.415	ENSMAMG00000018276	UPF2	100	82.087	Mastacembelus_armatus
ENSCJAG00000020685	UPF2	100	81.045	ENSMZEG00005021595	UPF2	100	82.371	Maylandia_zebra
ENSCJAG00000020685	UPF2	99	92.132	ENSMGAG00000004573	UPF2	99	92.132	Meleagris_gallopavo
ENSCJAG00000020685	UPF2	100	95.047	ENSMAUG00000016512	Upf2	100	95.047	Mesocricetus_auratus
ENSCJAG00000020685	UPF2	99	94.160	ENSMICG00000001716	UPF2	100	94.160	Microcebus_murinus
ENSCJAG00000020685	UPF2	100	96.696	ENSMOCG00000008263	Upf2	100	96.696	Microtus_ochrogaster
ENSCJAG00000020685	UPF2	99	79.141	ENSMMOG00000006528	UPF2	100	79.793	Mola_mola
ENSCJAG00000020685	UPF2	100	94.807	ENSMODG00000016794	UPF2	100	94.807	Monodelphis_domestica
ENSCJAG00000020685	UPF2	99	81.314	ENSMALG00000002663	UPF2	100	81.676	Monopterus_albus
ENSCJAG00000020685	UPF2	100	96.934	MGP_CAROLIEiJ_G0023157	Upf2	100	98.095	Mus_caroli
ENSCJAG00000020685	UPF2	100	96.934	ENSMUSG00000043241	Upf2	100	96.934	Mus_musculus
ENSCJAG00000020685	UPF2	100	96.541	MGP_PahariEiJ_G0019217	Upf2	100	97.143	Mus_pahari
ENSCJAG00000020685	UPF2	100	97.170	MGP_SPRETEiJ_G0024075	Upf2	100	97.524	Mus_spretus
ENSCJAG00000020685	UPF2	100	97.720	ENSMPUG00000001064	UPF2	100	97.720	Mustela_putorius_furo
ENSCJAG00000020685	UPF2	99	96.939	ENSMLUG00000000228	UPF2	100	96.939	Myotis_lucifugus
ENSCJAG00000020685	UPF2	100	81.045	ENSNBRG00000013629	UPF2	100	82.371	Neolamprologus_brichardi
ENSCJAG00000020685	UPF2	100	99.057	ENSNLEG00000012058	UPF2	100	99.057	Nomascus_leucogenys
ENSCJAG00000020685	UPF2	56	97.927	ENSMEUG00000002180	-	55	97.927	Notamacropus_eugenii
ENSCJAG00000020685	UPF2	76	100.000	ENSOPRG00000006801	-	78	100.000	Ochotona_princeps
ENSCJAG00000020685	UPF2	100	96.617	ENSODEG00000001290	UPF2	100	96.617	Octodon_degus
ENSCJAG00000020685	UPF2	100	81.123	ENSONIG00000017991	UPF2	100	82.449	Oreochromis_niloticus
ENSCJAG00000020685	UPF2	99	97.022	ENSOCUG00000006230	UPF2	100	97.022	Oryctolagus_cuniculus
ENSCJAG00000020685	UPF2	100	81.026	ENSORLG00000017189	UPF2	100	81.357	Oryzias_latipes
ENSCJAG00000020685	UPF2	100	81.104	ENSORLG00020005969	UPF2	100	81.513	Oryzias_latipes_hni
ENSCJAG00000020685	UPF2	100	81.026	ENSORLG00015005713	UPF2	100	81.357	Oryzias_latipes_hsok
ENSCJAG00000020685	UPF2	99	77.475	ENSOMEG00000023420	UPF2	98	78.421	Oryzias_melastigma
ENSCJAG00000020685	UPF2	100	98.349	ENSOGAG00000005796	UPF2	100	98.349	Otolemur_garnettii
ENSCJAG00000020685	UPF2	100	97.488	ENSOARG00000014587	UPF2	100	97.488	Ovis_aries
ENSCJAG00000020685	UPF2	99	96.513	ENSPPAG00000037953	UPF2	100	96.513	Pan_paniscus
ENSCJAG00000020685	UPF2	100	97.563	ENSPPRG00000000690	UPF2	100	97.563	Panthera_pardus
ENSCJAG00000020685	UPF2	100	97.563	ENSPTIG00000008867	UPF2	100	97.563	Panthera_tigris_altaica
ENSCJAG00000020685	UPF2	100	99.135	ENSPTRG00000002291	UPF2	100	99.135	Pan_troglodytes
ENSCJAG00000020685	UPF2	100	99.214	ENSPANG00000023399	UPF2	100	99.214	Papio_anubis
ENSCJAG00000020685	UPF2	100	81.591	ENSPKIG00000025502	UPF2	100	81.747	Paramormyrops_kingsleyae
ENSCJAG00000020685	UPF2	60	90.571	ENSPSIG00000015158	UPF2	95	90.571	Pelodiscus_sinensis
ENSCJAG00000020685	UPF2	99	78.633	ENSPMGG00000005259	UPF2	100	80.204	Periophthalmus_magnuspinnatus
ENSCJAG00000020685	UPF2	93	92.442	ENSPEMG00000015731	Upf2	99	90.962	Peromyscus_maniculatus_bairdii
ENSCJAG00000020685	UPF2	100	94.571	ENSPCIG00000006656	UPF2	100	94.571	Phascolarctos_cinereus
ENSCJAG00000020685	UPF2	100	79.953	ENSPFOG00000017118	UPF2	100	81.747	Poecilia_formosa
ENSCJAG00000020685	UPF2	100	79.953	ENSPLAG00000005094	UPF2	100	81.747	Poecilia_latipinna
ENSCJAG00000020685	UPF2	100	79.953	ENSPMEG00000017009	UPF2	100	81.747	Poecilia_mexicana
ENSCJAG00000020685	UPF2	99	79.718	ENSPREG00000021880	UPF2	100	81.989	Poecilia_reticulata
ENSCJAG00000020685	UPF2	66	99.522	ENSPPYG00000002089	-	100	99.522	Pongo_abelii
ENSCJAG00000020685	UPF2	88	95.216	ENSPCAG00000000684	UPF2	86	95.216	Procavia_capensis
ENSCJAG00000020685	UPF2	99	97.120	ENSPCOG00000021656	UPF2	100	97.120	Propithecus_coquereli
ENSCJAG00000020685	UPF2	100	89.474	ENSPVAG00000017286	UPF2	100	89.072	Pteropus_vampyrus
ENSCJAG00000020685	UPF2	99	78.594	ENSPNYG00000017096	UPF2	100	79.922	Pundamilia_nyererei
ENSCJAG00000020685	UPF2	100	82.449	ENSPNAG00000009357	UPF2	100	82.293	Pygocentrus_nattereri
ENSCJAG00000020685	UPF2	99	89.874	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSCJAG00000020685	UPF2	99	98.110	ENSRBIG00000037780	UPF2	100	98.110	Rhinopithecus_bieti
ENSCJAG00000020685	UPF2	100	99.135	ENSRROG00000043547	UPF2	100	99.135	Rhinopithecus_roxellana
ENSCJAG00000020685	UPF2	100	99.213	ENSSBOG00000020012	UPF2	100	99.213	Saimiri_boliviensis_boliviensis
ENSCJAG00000020685	UPF2	100	81.216	ENSSFOG00015023788	upf2	100	82.697	Scleropages_formosus
ENSCJAG00000020685	UPF2	90	82.914	ENSSMAG00000007637	UPF2	100	79.907	Scophthalmus_maximus
ENSCJAG00000020685	UPF2	100	81.669	ENSSDUG00000017244	UPF2	99	82.293	Seriola_dumerili
ENSCJAG00000020685	UPF2	99	79.953	ENSSLDG00000016866	UPF2	100	80.191	Seriola_lalandi_dorsalis
ENSCJAG00000020685	UPF2	100	94.104	ENSSARG00000008615	UPF2	100	94.886	Sorex_araneus
ENSCJAG00000020685	UPF2	99	89.449	ENSSPUG00000014544	UPF2	99	89.449	Sphenodon_punctatus
ENSCJAG00000020685	UPF2	68	98.734	ENSSSCG00000011117	-	100	98.734	Sus_scrofa
ENSCJAG00000020685	UPF2	99	92.508	ENSTGUG00000002163	-	100	92.508	Taeniopygia_guttata
ENSCJAG00000020685	UPF2	100	81.075	ENSTRUG00000007519	UPF2	99	81.747	Takifugu_rubripes
ENSCJAG00000020685	UPF2	100	80.016	ENSTNIG00000004453	UPF2	100	79.907	Tetraodon_nigroviridis
ENSCJAG00000020685	UPF2	93	89.763	ENSTBEG00000012679	UPF2	93	88.823	Tupaia_belangeri
ENSCJAG00000020685	UPF2	100	97.482	ENSTTRG00000016388	UPF2	100	97.482	Tursiops_truncatus
ENSCJAG00000020685	UPF2	94	100.000	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSCJAG00000020685	UPF2	100	97.956	ENSUMAG00000012953	UPF2	95	97.956	Ursus_maritimus
ENSCJAG00000020685	UPF2	86	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSCJAG00000020685	UPF2	100	97.642	ENSVVUG00000006166	UPF2	100	97.642	Vulpes_vulpes
ENSCJAG00000020685	UPF2	100	84.483	ENSXETG00000033103	UPF2	91	88.927	Xenopus_tropicalis
ENSCJAG00000020685	UPF2	92	84.287	ENSXCOG00000011604	UPF2	100	81.406	Xiphophorus_couchianus
ENSCJAG00000020685	UPF2	92	84.569	ENSXMAG00000017209	UPF2	100	81.435	Xiphophorus_maculatus