EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000020822 (Gene tree)
Gene ID: 100389073
Gene Symbol: SRRM1
Alias: MGC39488|POP101|SRM160
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 28391 bases
Position: chrNTIC01036611.1:96592204-96620594
Accession: 16638
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000038746	PWI	PF01480.17	7.9e-30	1	1
ENSCJAP00000044090	PWI	PF01480.17	8.5e-30	1	1
ENSCJAP00000038750	PWI	PF01480.17	8.6e-30	1	1
ENSCJAP00000038752	PWI	PF01480.17	7.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000040932	SRRM1-202	2742	-	ENSCJAP00000038750	913 (aa)	-	F7IG54
ENSCJAT00000040927	SRRM1-204	2445	-	ENSCJAP00000038746	814 (aa)	-	F7IG76
ENSCJAT00000040934	SRRM1-201	2813	-	ENSCJAP00000038752	820 (aa)	-	F7IG52
ENSCJAT00000054534	SRRM1-203	2754	-	ENSCJAP00000044090	917 (aa)	-	F7H227

Gene Model

Click here to download ENSCJAG00000020822's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03013	RNA transport	KEGG
cjc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000020822's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000020822	SRRM1	100	98.576	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSCJAG00000020822	SRRM1	100	97.700	ENSAMEG00000010075	SRRM1	100	97.700	Ailuropoda_melanoleuca
ENSCJAG00000020822	SRRM1	100	99.147	ENSANAG00000035606	SRRM1	100	99.014	Aotus_nancymaae
ENSCJAG00000020822	SRRM1	100	96.346	ENSBTAG00000013772	SRRM1	100	96.187	Bos_taurus
ENSCJAG00000020822	SRRM1	100	96.955	ENSCAFG00020020948	SRRM1	100	95.316	Canis_lupus_dingo
ENSCJAG00000020822	SRRM1	100	95.078	ENSCHIG00000014656	SRRM1	91	95.078	Capra_hircus
ENSCJAG00000020822	SRRM1	100	97.590	ENSTSYG00000006782	SRRM1	100	97.590	Carlito_syrichta
ENSCJAG00000020822	SRRM1	100	99.124	ENSCCAG00000029474	SRRM1	100	99.124	Cebus_capucinus
ENSCJAG00000020822	SRRM1	100	98.051	ENSCATG00000031303	SRRM1	100	97.712	Cercocebus_atys
ENSCJAG00000020822	SRRM1	80	97.746	ENSCHOG00000000027	SRRM1	73	99.155	Choloepus_hoffmanni
ENSCJAG00000020822	SRRM1	100	98.248	ENSCANG00000028271	SRRM1	100	98.248	Colobus_angolensis_palliatus
ENSCJAG00000020822	SRRM1	52	90.498	ENSDNOG00000049141	SRRM1	51	94.357	Dasypus_novemcinctus
ENSCJAG00000020822	SRRM1	100	96.078	ENSEASG00005004270	SRRM1	100	96.078	Equus_asinus_asinus
ENSCJAG00000020822	SRRM1	100	96.346	ENSECAG00000026981	SRRM1	100	96.187	Equus_caballus
ENSCJAG00000020822	SRRM1	100	97.700	ENSFCAG00000000678	-	100	97.700	Felis_catus
ENSCJAG00000020822	SRRM1	100	96.102	ENSFDAG00000009903	SRRM1	100	96.078	Fukomys_damarensis
ENSCJAG00000020822	SRRM1	100	98.467	ENSGGOG00000005209	SRRM1	100	98.467	Gorilla_gorilla
ENSCJAG00000020822	SRRM1	100	96.224	ENSHGLG00000017105	SRRM1	100	96.187	Heterocephalus_glaber_female
ENSCJAG00000020822	SRRM1	100	96.224	ENSHGLG00100016772	SRRM1	91	96.224	Heterocephalus_glaber_male
ENSCJAG00000020822	SRRM1	100	97.077	ENSSTOG00000014640	SRRM1	100	96.950	Ictidomys_tridecemlineatus
ENSCJAG00000020822	SRRM1	100	93.637	ENSLAFG00000013830	SRRM1	100	93.637	Loxodonta_africana
ENSCJAG00000020822	SRRM1	100	97.929	ENSMFAG00000025726	SRRM1	100	97.712	Macaca_fascicularis
ENSCJAG00000020822	SRRM1	85	78.889	ENSMFAG00000038841	-	54	77.396	Macaca_fascicularis
ENSCJAG00000020822	SRRM1	100	97.808	ENSMMUG00000006645	SRRM1	99	97.549	Macaca_mulatta
ENSCJAG00000020822	SRRM1	100	97.929	ENSMNEG00000039415	SRRM1	100	97.603	Macaca_nemestrina
ENSCJAG00000020822	SRRM1	61	97.988	ENSMLEG00000038030	-	100	92.223	Mandrillus_leucophaeus
ENSCJAG00000020822	SRRM1	65	72.761	ENSMLEG00000032221	-	58	74.597	Mandrillus_leucophaeus
ENSCJAG00000020822	SRRM1	100	96.833	ENSMICG00000006553	SRRM1	100	96.732	Microcebus_murinus
ENSCJAG00000020822	SRRM1	100	98.576	ENSNLEG00000008966	SRRM1	100	98.576	Nomascus_leucogenys
ENSCJAG00000020822	SRRM1	66	88.272	ENSMEUG00000014704	SRRM1	59	83.636	Notamacropus_eugenii
ENSCJAG00000020822	SRRM1	67	100.000	ENSODEG00000013381	SRRM1	64	92.762	Octodon_degus
ENSCJAG00000020822	SRRM1	100	96.507	ENSOCUG00000008438	SRRM1	100	96.507	Oryctolagus_cuniculus
ENSCJAG00000020822	SRRM1	100	96.187	ENSOGAG00000010210	SRRM1	100	96.187	Otolemur_garnettii
ENSCJAG00000020822	SRRM1	92	96.816	ENSOARG00000006453	SRRM1	99	96.816	Ovis_aries
ENSCJAG00000020822	SRRM1	100	98.467	ENSPPAG00000043918	SRRM1	100	98.467	Pan_paniscus
ENSCJAG00000020822	SRRM1	100	97.700	ENSPPRG00000002509	SRRM1	100	97.700	Panthera_pardus
ENSCJAG00000020822	SRRM1	65	96.075	ENSPTIG00000008778	-	60	96.000	Panthera_tigris_altaica
ENSCJAG00000020822	SRRM1	100	98.295	ENSPTRG00000000349	SRRM1	100	98.039	Pan_troglodytes
ENSCJAG00000020822	SRRM1	60	78.629	ENSPANG00000035568	-	59	77.419	Papio_anubis
ENSCJAG00000020822	SRRM1	100	97.672	ENSPANG00000010194	SRRM1	99	97.672	Papio_anubis
ENSCJAG00000020822	SRRM1	100	98.249	ENSPPYG00000001716	SRRM1	100	98.249	Pongo_abelii
ENSCJAG00000020822	SRRM1	52	100.000	ENSPCAG00000015138	SRRM1	52	100.000	Procavia_capensis
ENSCJAG00000020822	SRRM1	100	97.374	ENSPCOG00000021311	SRRM1	100	97.374	Propithecus_coquereli
ENSCJAG00000020822	SRRM1	100	97.590	ENSPVAG00000005836	SRRM1	100	97.590	Pteropus_vampyrus
ENSCJAG00000020822	SRRM1	99	91.776	ENSRBIG00000035461	SRRM1	99	91.776	Rhinopithecus_bieti
ENSCJAG00000020822	SRRM1	100	98.248	ENSRROG00000035151	SRRM1	100	98.248	Rhinopithecus_roxellana
ENSCJAG00000020822	SRRM1	100	98.039	ENSSBOG00000019884	SRRM1	99	100.000	Saimiri_boliviensis_boliviensis
ENSCJAG00000020822	SRRM1	100	87.665	ENSSARG00000013718	SRRM1	91	87.665	Sorex_araneus
ENSCJAG00000020822	SRRM1	65	69.983	ENSSPUG00000015890	SRRM1	57	81.734	Sphenodon_punctatus
ENSCJAG00000020822	SRRM1	100	96.833	ENSSSCG00000032947	SRRM1	100	96.833	Sus_scrofa
ENSCJAG00000020822	SRRM1	100	96.714	ENSTBEG00000000100	SRRM1	100	96.714	Tupaia_belangeri
ENSCJAG00000020822	SRRM1	99	96.689	ENSTTRG00000009365	SRRM1	100	96.689	Tursiops_truncatus
ENSCJAG00000020822	SRRM1	92	98.143	ENSUMAG00000013121	SRRM1	95	96.054	Ursus_maritimus
ENSCJAG00000020822	SRRM1	100	94.519	ENSVVUG00000026966	SRRM1	100	88.841	Vulpes_vulpes