EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCJAG00000021421 (Gene tree)
Gene ID: 100401197
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Minus strand
Length: 16805 bases
Position: chrNTIC01007779.1:45781255-45798059
Accession: 2324
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000039864	CPSF_A	PF03178.15	1e-91	1	1
ENSCJAP00000051658	CPSF_A	PF03178.15	5.5e-78	1	2
ENSCJAP00000051658	CPSF_A	PF03178.15	5.5e-78	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000042116	CPSF1-201	4499	-	ENSCJAP00000039864	1442 (aa)	-	U3CFH4
ENSCJAT00000042117	CPSF1-203	447	-	ENSCJAP00000039865	148 (aa)	-	F7FRI6
ENSCJAT00000058622	CPSF1-202	4343	-	ENSCJAP00000051658	1390 (aa)	-	F6YZ20

Gene Model

Click here to download ENSCJAG00000021421's gene model file

Pathways

Pathway ID	Pathway Name	Source
cjc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000021421's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000021421	CPSF1	100	98.753	ENSG00000071894	CPSF1	100	98.753	Homo_sapiens
ENSCJAG00000021421	CPSF1	100	78.041	ENSAPOG00000019621	cpsf1	100	78.243	Acanthochromis_polyacanthus
ENSCJAG00000021421	CPSF1	97	94.782	ENSAMEG00000005557	CPSF1	100	94.782	Ailuropoda_melanoleuca
ENSCJAG00000021421	CPSF1	100	78.201	ENSACIG00000006112	cpsf1	100	78.408	Amphilophus_citrinellus
ENSCJAG00000021421	CPSF1	100	79.531	ENSAOCG00000007120	cpsf1	100	79.669	Amphiprion_ocellaris
ENSCJAG00000021421	CPSF1	100	79.807	ENSAPEG00000005755	cpsf1	100	79.945	Amphiprion_percula
ENSCJAG00000021421	CPSF1	100	77.748	ENSATEG00000011097	cpsf1	100	78.152	Anabas_testudineus
ENSCJAG00000021421	CPSF1	93	81.622	ENSACAG00000009655	CPSF1	100	81.622	Anolis_carolinensis
ENSCJAG00000021421	CPSF1	100	99.515	ENSANAG00000036514	CPSF1	100	99.515	Aotus_nancymaae
ENSCJAG00000021421	CPSF1	100	77.509	ENSACLG00000012231	cpsf1	99	78.762	Astatotilapia_calliptera
ENSCJAG00000021421	CPSF1	100	73.946	ENSAMXG00000008485	cpsf1	100	74.015	Astyanax_mexicanus
ENSCJAG00000021421	CPSF1	100	94.558	ENSBTAG00000008355	CPSF1	100	94.816	Bos_taurus
ENSCJAG00000021421	CPSF1	100	32.388	WBGene00022301	cpsf-1	100	40.282	Caenorhabditis_elegans
ENSCJAG00000021421	CPSF1	97	95.926	ENSCAFG00000001600	CPSF1	100	96.300	Canis_familiaris
ENSCJAG00000021421	CPSF1	100	96.194	ENSCAFG00020020821	CPSF1	100	96.194	Canis_lupus_dingo
ENSCJAG00000021421	CPSF1	100	92.771	ENSCHIG00000015833	CPSF1	100	92.771	Capra_hircus
ENSCJAG00000021421	CPSF1	100	97.920	ENSTSYG00000028560	CPSF1	99	99.123	Carlito_syrichta
ENSCJAG00000021421	CPSF1	97	95.197	ENSCAPG00000014921	CPSF1	99	95.197	Cavia_aperea
ENSCJAG00000021421	CPSF1	100	94.872	ENSCPOG00000011448	CPSF1	100	94.872	Cavia_porcellus
ENSCJAG00000021421	CPSF1	100	99.584	ENSCCAG00000037658	CPSF1	100	99.584	Cebus_capucinus
ENSCJAG00000021421	CPSF1	100	98.613	ENSCATG00000037234	CPSF1	100	98.613	Cercocebus_atys
ENSCJAG00000021421	CPSF1	100	96.533	ENSCLAG00000012166	CPSF1	100	96.533	Chinchilla_lanigera
ENSCJAG00000021421	CPSF1	100	98.752	ENSCSAG00000008502	CPSF1	100	98.752	Chlorocebus_sabaeus
ENSCJAG00000021421	CPSF1	99	87.404	ENSCPBG00000018910	CPSF1	96	87.404	Chrysemys_picta_bellii
ENSCJAG00000021421	CPSF1	96	48.744	ENSCING00000000514	-	100	48.672	Ciona_intestinalis
ENSCJAG00000021421	CPSF1	99	48.008	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSCJAG00000021421	CPSF1	99	93.072	ENSCANG00000032760	CPSF1	99	93.072	Colobus_angolensis_palliatus
ENSCJAG00000021421	CPSF1	100	96.533	ENSCGRG00001016344	Cpsf1	100	96.533	Cricetulus_griseus_chok1gshd
ENSCJAG00000021421	CPSF1	100	94.452	ENSCGRG00000003118	Cpsf1	100	94.452	Cricetulus_griseus_crigri
ENSCJAG00000021421	CPSF1	100	77.632	ENSCSEG00000013464	cpsf1	100	77.770	Cynoglossus_semilaevis
ENSCJAG00000021421	CPSF1	85	76.977	ENSCVAG00000014059	cpsf1	100	75.926	Cyprinodon_variegatus
ENSCJAG00000021421	CPSF1	100	79.683	ENSDARG00000034178	cpsf1	100	79.752	Danio_rerio
ENSCJAG00000021421	CPSF1	59	95.942	ENSDNOG00000043654	CPSF1	94	95.942	Dasypus_novemcinctus
ENSCJAG00000021421	CPSF1	97	95.699	ENSDORG00000006278	Cpsf1	99	95.699	Dipodomys_ordii
ENSCJAG00000021421	CPSF1	100	45.595	FBgn0024698	Cpsf160	100	45.491	Drosophila_melanogaster
ENSCJAG00000021421	CPSF1	80	96.644	ENSETEG00000006022	CPSF1	83	96.644	Echinops_telfairi
ENSCJAG00000021421	CPSF1	100	96.955	ENSEASG00005010774	CPSF1	100	96.955	Equus_asinus_asinus
ENSCJAG00000021421	CPSF1	100	96.955	ENSECAG00000022209	CPSF1	100	96.955	Equus_caballus
ENSCJAG00000021421	CPSF1	100	94.879	ENSEEUG00000000471	CPSF1	100	94.879	Erinaceus_europaeus
ENSCJAG00000021421	CPSF1	100	78.493	ENSELUG00000012271	cpsf1	100	78.767	Esox_lucius
ENSCJAG00000021421	CPSF1	100	96.671	ENSFDAG00000016060	CPSF1	100	96.671	Fukomys_damarensis
ENSCJAG00000021421	CPSF1	100	76.791	ENSFHEG00000016801	cpsf1	100	76.860	Fundulus_heteroclitus
ENSCJAG00000021421	CPSF1	100	78.015	ENSGMOG00000000796	cpsf1	100	78.429	Gadus_morhua
ENSCJAG00000021421	CPSF1	95	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
ENSCJAG00000021421	CPSF1	100	78.655	ENSGACG00000008703	cpsf1	100	78.738	Gasterosteus_aculeatus
ENSCJAG00000021421	CPSF1	95	90.196	ENSGAGG00000004276	CPSF1	98	87.332	Gopherus_agassizii
ENSCJAG00000021421	CPSF1	100	98.890	ENSGGOG00000016185	CPSF1	100	98.890	Gorilla_gorilla
ENSCJAG00000021421	CPSF1	100	79.723	ENSHBUG00000018900	cpsf1	100	79.862	Haplochromis_burtoni
ENSCJAG00000021421	CPSF1	100	96.463	ENSHGLG00000016139	CPSF1	100	96.463	Heterocephalus_glaber_female
ENSCJAG00000021421	CPSF1	100	96.394	ENSHGLG00100009750	CPSF1	100	96.394	Heterocephalus_glaber_male
ENSCJAG00000021421	CPSF1	100	77.085	ENSHCOG00000018509	cpsf1	100	76.934	Hippocampus_comes
ENSCJAG00000021421	CPSF1	100	76.564	ENSIPUG00000011259	cpsf1	100	76.564	Ictalurus_punctatus
ENSCJAG00000021421	CPSF1	97	96.500	ENSSTOG00000009957	CPSF1	99	96.500	Ictidomys_tridecemlineatus
ENSCJAG00000021421	CPSF1	100	96.533	ENSJJAG00000023002	Cpsf1	100	96.533	Jaculus_jaculus
ENSCJAG00000021421	CPSF1	91	85.893	ENSKMAG00000001940	cpsf1	99	85.893	Kryptolebias_marmoratus
ENSCJAG00000021421	CPSF1	100	77.319	ENSLBEG00000003601	cpsf1	100	77.686	Labrus_bergylta
ENSCJAG00000021421	CPSF1	88	81.130	ENSLACG00000000233	CPSF1	92	81.130	Latimeria_chalumnae
ENSCJAG00000021421	CPSF1	100	78.192	ENSLOCG00000008484	cpsf1	100	78.468	Lepisosteus_oculatus
ENSCJAG00000021421	CPSF1	97	95.207	ENSLAFG00000022601	CPSF1	100	95.207	Loxodonta_africana
ENSCJAG00000021421	CPSF1	100	98.613	ENSMFAG00000037013	CPSF1	100	98.613	Macaca_fascicularis
ENSCJAG00000021421	CPSF1	100	98.682	ENSMMUG00000007380	CPSF1	100	98.682	Macaca_mulatta
ENSCJAG00000021421	CPSF1	97	98.780	ENSMNEG00000043564	CPSF1	100	98.780	Macaca_nemestrina
ENSCJAG00000021421	CPSF1	100	98.752	ENSMLEG00000043010	CPSF1	100	98.752	Mandrillus_leucophaeus
ENSCJAG00000021421	CPSF1	100	78.311	ENSMAMG00000003803	cpsf1	100	78.446	Mastacembelus_armatus
ENSCJAG00000021421	CPSF1	100	77.647	ENSMZEG00005001168	cpsf1	100	77.785	Maylandia_zebra
ENSCJAG00000021421	CPSF1	100	96.255	ENSMAUG00000003601	Cpsf1	100	96.255	Mesocricetus_auratus
ENSCJAG00000021421	CPSF1	100	97.503	ENSMICG00000015767	CPSF1	100	97.503	Microcebus_murinus
ENSCJAG00000021421	CPSF1	100	96.394	ENSMOCG00000022758	Cpsf1	100	96.394	Microtus_ochrogaster
ENSCJAG00000021421	CPSF1	100	78.907	ENSMMOG00000021245	cpsf1	100	79.046	Mola_mola
ENSCJAG00000021421	CPSF1	100	93.034	ENSMODG00000010755	CPSF1	100	93.034	Monodelphis_domestica
ENSCJAG00000021421	CPSF1	100	77.673	ENSMALG00000020545	cpsf1	100	77.808	Monopterus_albus
ENSCJAG00000021421	CPSF1	100	96.602	MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.602	Mus_caroli
ENSCJAG00000021421	CPSF1	100	96.533	ENSMUSG00000034022	Cpsf1	99	99.167	Mus_musculus
ENSCJAG00000021421	CPSF1	100	96.463	MGP_PahariEiJ_G0019946	Cpsf1	100	96.463	Mus_pahari
ENSCJAG00000021421	CPSF1	100	96.533	MGP_SPRETEiJ_G0020839	Cpsf1	100	96.533	Mus_spretus
ENSCJAG00000021421	CPSF1	94	95.556	ENSMPUG00000006419	CPSF1	93	95.556	Mustela_putorius_furo
ENSCJAG00000021421	CPSF1	100	96.394	ENSNGAG00000022460	Cpsf1	100	96.394	Nannospalax_galili
ENSCJAG00000021421	CPSF1	100	74.965	ENSNBRG00000000813	cpsf1	100	74.965	Neolamprologus_brichardi
ENSCJAG00000021421	CPSF1	86	87.106	ENSNLEG00000010633	-	100	89.815	Nomascus_leucogenys
ENSCJAG00000021421	CPSF1	82	95.930	ENSMEUG00000014922	CPSF1	85	95.930	Notamacropus_eugenii
ENSCJAG00000021421	CPSF1	63	97.449	ENSOPRG00000004693	-	71	97.449	Ochotona_princeps
ENSCJAG00000021421	CPSF1	100	96.671	ENSODEG00000013995	CPSF1	100	96.671	Octodon_degus
ENSCJAG00000021421	CPSF1	100	80.000	ENSONIG00000007676	cpsf1	100	80.138	Oreochromis_niloticus
ENSCJAG00000021421	CPSF1	58	90.714	ENSOANG00000010716	CPSF1	88	90.714	Ornithorhynchus_anatinus
ENSCJAG00000021421	CPSF1	100	77.446	ENSORLG00000013544	cpsf1	92	87.243	Oryzias_latipes
ENSCJAG00000021421	CPSF1	100	77.582	ENSORLG00020021693	cpsf1	92	87.243	Oryzias_latipes_hni
ENSCJAG00000021421	CPSF1	100	77.430	ENSORLG00015009979	cpsf1	100	77.498	Oryzias_latipes_hsok
ENSCJAG00000021421	CPSF1	100	77.242	ENSOMEG00000011849	cpsf1	100	77.808	Oryzias_melastigma
ENSCJAG00000021421	CPSF1	100	97.503	ENSOGAG00000000315	CPSF1	100	97.503	Otolemur_garnettii
ENSCJAG00000021421	CPSF1	100	98.960	ENSPPAG00000019280	CPSF1	100	98.960	Pan_paniscus
ENSCJAG00000021421	CPSF1	100	97.273	ENSPTRG00000051253	-	100	97.273	Pan_troglodytes
ENSCJAG00000021421	CPSF1	100	98.960	ENSPTRG00000049288	-	100	98.960	Pan_troglodytes
ENSCJAG00000021421	CPSF1	97	98.637	ENSPANG00000015005	CPSF1	100	98.637	Papio_anubis
ENSCJAG00000021421	CPSF1	100	80.913	ENSPKIG00000002582	cpsf1	100	81.770	Paramormyrops_kingsleyae
ENSCJAG00000021421	CPSF1	100	92.966	ENSPCIG00000009035	CPSF1	100	92.966	Phascolarctos_cinereus
ENSCJAG00000021421	CPSF1	100	76.387	ENSPFOG00000012870	cpsf1	100	76.590	Poecilia_formosa
ENSCJAG00000021421	CPSF1	100	76.200	ENSPREG00000016307	cpsf1	100	76.335	Poecilia_reticulata
ENSCJAG00000021421	CPSF1	100	90.777	ENSPPYG00000018973	CPSF1	100	90.777	Pongo_abelii
ENSCJAG00000021421	CPSF1	91	94.886	ENSPCAG00000011541	CPSF1	94	94.886	Procavia_capensis
ENSCJAG00000021421	CPSF1	100	93.694	ENSPCOG00000020001	CPSF1	100	93.694	Propithecus_coquereli
ENSCJAG00000021421	CPSF1	91	98.286	ENSPVAG00000006761	CPSF1	91	98.286	Pteropus_vampyrus
ENSCJAG00000021421	CPSF1	100	78.689	ENSPNYG00000004906	cpsf1	100	78.825	Pundamilia_nyererei
ENSCJAG00000021421	CPSF1	100	75.276	ENSPNAG00000024395	cpsf1	100	75.276	Pygocentrus_nattereri
ENSCJAG00000021421	CPSF1	100	96.671	ENSRNOG00000030705	Cpsf1	100	96.671	Rattus_norvegicus
ENSCJAG00000021421	CPSF1	100	98.613	ENSRBIG00000044907	CPSF1	100	98.613	Rhinopithecus_bieti
ENSCJAG00000021421	CPSF1	100	98.544	ENSRROG00000044861	CPSF1	100	98.544	Rhinopithecus_roxellana
ENSCJAG00000021421	CPSF1	97	99.570	ENSSBOG00000027177	CPSF1	100	99.570	Saimiri_boliviensis_boliviensis
ENSCJAG00000021421	CPSF1	100	92.690	ENSSHAG00000006500	CPSF1	100	92.690	Sarcophilus_harrisii
ENSCJAG00000021421	CPSF1	100	78.306	ENSSFOG00015004606	cpsf1	100	81.382	Scleropages_formosus
ENSCJAG00000021421	CPSF1	100	77.808	ENSSMAG00000020547	cpsf1	100	77.943	Scophthalmus_maximus
ENSCJAG00000021421	CPSF1	100	79.267	ENSSDUG00000001100	cpsf1	100	79.613	Seriola_dumerili
ENSCJAG00000021421	CPSF1	100	79.530	ENSSLDG00000003619	cpsf1	100	79.599	Seriola_lalandi_dorsalis
ENSCJAG00000021421	CPSF1	89	97.917	ENSSARG00000003643	CPSF1	92	97.917	Sorex_araneus
ENSCJAG00000021421	CPSF1	96	87.527	ENSSPUG00000014396	CPSF1	100	87.527	Sphenodon_punctatus
ENSCJAG00000021421	CPSF1	100	78.161	ENSSPAG00000005349	cpsf1	100	78.296	Stegastes_partitus
ENSCJAG00000021421	CPSF1	100	95.848	ENSSSCG00000005906	CPSF1	100	95.848	Sus_scrofa
ENSCJAG00000021421	CPSF1	96	77.832	ENSTRUG00000013134	cpsf1	99	77.972	Takifugu_rubripes
ENSCJAG00000021421	CPSF1	100	78.763	ENSTNIG00000014027	cpsf1	100	78.832	Tetraodon_nigroviridis
ENSCJAG00000021421	CPSF1	80	89.138	ENSTBEG00000001756	CPSF1	91	89.138	Tupaia_belangeri
ENSCJAG00000021421	CPSF1	90	96.546	ENSTTRG00000001937	CPSF1	90	96.546	Tursiops_truncatus
ENSCJAG00000021421	CPSF1	97	96.426	ENSUAMG00000006476	CPSF1	98	96.426	Ursus_americanus
ENSCJAG00000021421	CPSF1	100	77.524	ENSXCOG00000003608	cpsf1	100	77.663	Xiphophorus_couchianus
ENSCJAG00000021421	CPSF1	100	77.003	ENSXMAG00000005798	cpsf1	100	77.279	Xiphophorus_maculatus