EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000042664 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 22072 bases
Position: chrNTIC01006668.1:63562690-63584761
Accession: 100389959
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000061991	LSM	PF01423.22	6.5e-20	1	1
ENSCJAP00000053199	LSM	PF01423.22	2.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000073567	-	2297	-	ENSCJAP00000053199	125 (aa)	-	A0A2R8M3Q1
ENSCJAT00000079881	-	2145	-	ENSCJAP00000061991	102 (aa)	XP_002758699	F7ICR4

Gene Model

Click here to download ENSCJAG00000042664's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000042664's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000042664	-	75	31.646	ENSCJAG00000044646	-	59	31.429
ENSCJAG00000042664	-	77	31.707	ENSCJAG00000019291	-	69	31.707
ENSCJAG00000042664	-	77	31.707	ENSCJAG00000044723	-	69	31.707
ENSCJAG00000042664	-	77	30.488	ENSCJAG00000041687	-	69	30.488
ENSCJAG00000042664	-	77	31.707	ENSCJAG00000012413	-	69	31.707

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000042664	-	83	43.529	YLR438C-A	LSM3	89	43.529	Saccharomyces_cerevisiae