EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCJAG00000045332 (Gene tree)
Gene ID: -
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Callithrix_jacchus
Status: putative
Strand: Plus strand
Length: 1287 bases
Position: chrNTIC01033278.1:33951141-33952427
Accession: 31955
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCJAP00000067460	RRM_5	PF13893.6	2.6e-14	1	3
ENSCJAP00000067460	RRM_5	PF13893.6	2.6e-14	2	3
ENSCJAP00000067460	RRM_5	PF13893.6	2.6e-14	3	3
ENSCJAP00000067460	RRM_1	PF00076.22	8e-85	1	4
ENSCJAP00000067460	RRM_1	PF00076.22	8e-85	2	4
ENSCJAP00000067460	RRM_1	PF00076.22	8e-85	3	4
ENSCJAP00000067460	RRM_1	PF00076.22	8e-85	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCJAT00000084661	PABPC4L-201	1287	-	ENSCJAP00000067460	428 (aa)	-	U3B810

Gene Model

Click here to download ENSCJAG00000045332's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000045332's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCJAG00000045332	PABPC4L	65	71.667	ENSCJAG00000045953	-	53	71.667
ENSCJAG00000045332	PABPC4L	87	73.514	ENSCJAG00000002512	-	61	73.514
ENSCJAG00000045332	PABPC4L	84	60.674	ENSCJAG00000003665	PABPC5	99	60.106
ENSCJAG00000045332	PABPC4L	85	62.755	ENSCJAG00000041326	-	98	62.755
ENSCJAG00000045332	PABPC4L	61	30.508	ENSCJAG00000018864	-	64	30.508
ENSCJAG00000045332	PABPC4L	80	63.793	ENSCJAG00000038506	-	100	63.793
ENSCJAG00000045332	PABPC4L	84	30.000	ENSCJAG00000019278	TIA1	70	30.000
ENSCJAG00000045332	PABPC4L	87	71.351	ENSCJAG00000015833	PABPC1	60	71.351
ENSCJAG00000045332	PABPC4L	83	36.111	ENSCJAG00000017535	RBM39	92	36.111
ENSCJAG00000045332	PABPC4L	68	31.522	ENSCJAG00000041746	-	76	31.868
ENSCJAG00000045332	PABPC4L	87	65.833	ENSCJAG00000045282	-	69	65.833
ENSCJAG00000045332	PABPC4L	84	32.927	ENSCJAG00000009717	TRNAU1AP	86	37.500
ENSCJAG00000045332	PABPC4L	89	62.259	ENSCJAG00000017628	PABPC1L	62	62.259
ENSCJAG00000045332	PABPC4L	87	70.000	ENSCJAG00000041162	-	77	70.000
ENSCJAG00000045332	PABPC4L	74	42.105	ENSCJAG00000047341	-	89	45.333
ENSCJAG00000045332	PABPC4L	75	31.707	ENSCJAG00000046587	ELAVL1	82	31.707
ENSCJAG00000045332	PABPC4L	85	32.468	ENSCJAG00000019682	TIAL1	84	32.468

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCJAG00000045332	PABPC4L	86	97.297	ENSG00000254535	PABPC4L	100	97.297	Homo_sapiens
ENSCJAG00000045332	PABPC4L	100	96.729	ENSANAG00000017199	PABPC4L	100	96.729	Aotus_nancymaae
ENSCJAG00000045332	PABPC4L	86	87.805	ENSBTAG00000046902	PABPC4L	99	87.805	Bos_taurus
ENSCJAG00000045332	PABPC4L	89	73.370	ENSCAFG00020019182	-	54	73.370	Canis_lupus_dingo
ENSCJAG00000045332	PABPC4L	86	87.805	ENSCHIG00000007231	PABPC4L	99	87.805	Capra_hircus
ENSCJAG00000045332	PABPC4L	85	79.701	ENSCAPG00000000555	PABPC4L	100	79.701	Cavia_aperea
ENSCJAG00000045332	PABPC4L	86	77.027	ENSCPOG00000033167	PABPC4L	100	77.027	Cavia_porcellus
ENSCJAG00000045332	PABPC4L	100	97.897	ENSCCAG00000031681	PABPC4L	100	97.897	Cebus_capucinus
ENSCJAG00000045332	PABPC4L	86	82.703	ENSCLAG00000017628	PABPC4L	100	82.703	Chinchilla_lanigera
ENSCJAG00000045332	PABPC4L	86	94.865	ENSCANG00000037677	PABPC4L	100	94.865	Colobus_angolensis_palliatus
ENSCJAG00000045332	PABPC4L	86	82.703	ENSCGRG00001002070	Pabpc4l	100	82.703	Cricetulus_griseus_chok1gshd
ENSCJAG00000045332	PABPC4L	86	82.703	ENSCGRG00000020086	Pabpc4l	100	82.703	Cricetulus_griseus_crigri
ENSCJAG00000045332	PABPC4L	91	88.144	ENSDNOG00000031077	PABPC4L	100	88.144	Dasypus_novemcinctus
ENSCJAG00000045332	PABPC4L	86	87.263	ENSEASG00005007883	PABPC4L	99	87.263	Equus_asinus_asinus
ENSCJAG00000045332	PABPC4L	86	87.534	ENSECAG00000031416	PABPC4L	99	87.534	Equus_caballus
ENSCJAG00000045332	PABPC4L	86	88.076	ENSFCAG00000028270	PABPC4L	99	88.076	Felis_catus
ENSCJAG00000045332	PABPC4L	86	82.927	ENSFDAG00000019606	PABPC4L	99	82.927	Fukomys_damarensis
ENSCJAG00000045332	PABPC4L	86	96.757	ENSGGOG00000024991	PABPC4L	100	96.757	Gorilla_gorilla
ENSCJAG00000045332	PABPC4L	86	83.469	ENSHGLG00000020104	PABPC4L	99	83.469	Heterocephalus_glaber_female
ENSCJAG00000045332	PABPC4L	86	83.469	ENSHGLG00100020648	PABPC4L	99	83.469	Heterocephalus_glaber_male
ENSCJAG00000045332	PABPC4L	87	86.792	ENSSTOG00000019472	PABPC4L	99	86.792	Ictidomys_tridecemlineatus
ENSCJAG00000045332	PABPC4L	86	82.385	ENSJJAG00000004090	Pabpc4l	99	82.385	Jaculus_jaculus
ENSCJAG00000045332	PABPC4L	86	82.973	ENSMAUG00000016313	Pabpc4l	100	82.973	Mesocricetus_auratus
ENSCJAG00000045332	PABPC4L	86	92.973	ENSMICG00000029683	PABPC4L	100	92.973	Microcebus_murinus
ENSCJAG00000045332	PABPC4L	86	84.054	ENSMOCG00000007551	Pabpc4l	100	84.054	Microtus_ochrogaster
ENSCJAG00000045332	PABPC4L	86	80.811	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.811	Mus_caroli
ENSCJAG00000045332	PABPC4L	86	81.081	ENSMUSG00000090919	Pabpc4l	100	81.081	Mus_musculus
ENSCJAG00000045332	PABPC4L	86	81.351	MGP_PahariEiJ_G0026409	Pabpc4l	100	81.351	Mus_pahari
ENSCJAG00000045332	PABPC4L	86	80.541	MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.541	Mus_spretus
ENSCJAG00000045332	PABPC4L	86	78.320	ENSMLUG00000008254	PABPC4L	99	78.320	Myotis_lucifugus
ENSCJAG00000045332	PABPC4L	86	86.486	ENSNGAG00000001502	Pabpc4l	100	86.486	Nannospalax_galili
ENSCJAG00000045332	PABPC4L	86	96.757	ENSNLEG00000019300	PABPC4L	100	96.757	Nomascus_leucogenys
ENSCJAG00000045332	PABPC4L	86	85.405	ENSOGAG00000026166	PABPC4L	100	85.405	Otolemur_garnettii
ENSCJAG00000045332	PABPC4L	87	96.904	ENSPPAG00000043745	PABPC4L	93	96.904	Pan_paniscus
ENSCJAG00000045332	PABPC4L	86	87.534	ENSPPRG00000018628	PABPC4L	99	87.534	Panthera_pardus
ENSCJAG00000045332	PABPC4L	86	88.076	ENSPTIG00000010106	PABPC4L	99	88.076	Panthera_tigris_altaica
ENSCJAG00000045332	PABPC4L	99	93.176	ENSPTRG00000045513	-	89	93.176	Pan_troglodytes
ENSCJAG00000045332	PABPC4L	86	82.973	ENSPEMG00000012565	Pabpc4l	100	82.973	Peromyscus_maniculatus_bairdii
ENSCJAG00000045332	PABPC4L	86	92.973	ENSPCOG00000025578	PABPC4L	100	92.973	Propithecus_coquereli
ENSCJAG00000045332	PABPC4L	86	81.622	ENSRNOG00000029749	Pabpc4l	100	81.622	Rattus_norvegicus
ENSCJAG00000045332	PABPC4L	86	94.054	ENSRBIG00000030229	PABPC4L	100	94.054	Rhinopithecus_bieti
ENSCJAG00000045332	PABPC4L	86	93.784	ENSRROG00000020367	PABPC4L	100	93.784	Rhinopithecus_roxellana
ENSCJAG00000045332	PABPC4L	86	97.027	ENSSBOG00000016382	PABPC4L	100	97.027	Saimiri_boliviensis_boliviensis
ENSCJAG00000045332	PABPC4L	87	81.572	ENSSSCG00000009067	PABPC4L	99	81.572	Sus_scrofa
ENSCJAG00000045332	PABPC4L	86	87.805	ENSUAMG00000001289	PABPC4L	99	87.805	Ursus_americanus
ENSCJAG00000045332	PABPC4L	86	87.805	ENSUMAG00000014887	PABPC4L	99	87.805	Ursus_maritimus
ENSCJAG00000045332	PABPC4L	75	75.460	ENSVVUG00000011060	-	74	75.460	Vulpes_vulpes