EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCJAG00000047379 (Gene tree)
Gene ID
-
Gene Symbol
LSM5
Alias
YER146W
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Callithrix_jacchus
Status
putative
Strand
Minus strand
Length
5865 bases
Position
chrNTIC01002224.1:777383-783247
Accession
17162
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCJAP00000056628LSMPF01423.221.3e-1911
ENSCJAP00000016823LSMPF01423.221.9e-0711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCJAT00000079295LSM5-2013021-ENSCJAP00000056628159 (aa)-A0A2R8MZY3
ENSCJAT00000017786LSM5-202195-ENSCJAP0000001682364 (aa)-F6Y0T2
Gene Model
Click here to download ENSCJAG00000047379's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCJAG00000047379's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCJAG00000047379LSM58074.510ENSCJAG00000005678-10086.667
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCJAG00000047379LSM510096.875ENSG00000106355LSM5100100.000Homo_sapiens
ENSCJAG00000047379LSM58186.538ENSAPOG00000011743LSM510096.774Acanthochromis_polyacanthus
ENSCJAG00000047379LSM58186.538ENSAPOG00000020779LSM510095.604Acanthochromis_polyacanthus
ENSCJAG00000047379LSM58192.308ENSAMEG00000006700LSM5100100.000Ailuropoda_melanoleuca
ENSCJAG00000047379LSM55558.621ENSACIG00000019185lsm59858.621Amphilophus_citrinellus
ENSCJAG00000047379LSM58186.538ENSAOCG00000001636lsm510095.604Amphiprion_ocellaris
ENSCJAG00000047379LSM58186.538ENSAPEG00000008151lsm510095.604Amphiprion_percula
ENSCJAG00000047379LSM58184.615ENSATEG00000020470lsm510059.341Anabas_testudineus
ENSCJAG00000047379LSM55889.189ENSAPLG00000008171LSM5100100.000Anas_platyrhynchos
ENSCJAG00000047379LSM58192.308ENSACAG00000009530LSM510096.667Anolis_carolinensis
ENSCJAG00000047379LSM58366.038ENSANAG00000037758-10079.121Aotus_nancymaae
ENSCJAG00000047379LSM510096.875ENSANAG00000034409-10098.901Aotus_nancymaae
ENSCJAG00000047379LSM59182.759ENSANAG00000024192-9892.553Aotus_nancymaae
ENSCJAG00000047379LSM57585.417ENSACLG00000012891lsm59995.402Astatotilapia_calliptera
ENSCJAG00000047379LSM55989.474ENSAMXG00000035543lsm510081.915Astyanax_mexicanus
ENSCJAG00000047379LSM59769.355ENSBTAG00000052014-7569.355Bos_taurus
ENSCJAG00000047379LSM581100.000ENSBTAG00000002332LSM5100100.000Bos_taurus
ENSCJAG00000047379LSM58165.385WBGene00003079lsm-510073.626Caenorhabditis_elegans
ENSCJAG00000047379LSM58198.077ENSCAFG00000030781-6098.077Canis_familiaris
ENSCJAG00000047379LSM58192.308ENSCAFG00000019261-10098.901Canis_familiaris
ENSCJAG00000047379LSM58192.308ENSCAFG00020004946LSM5100100.000Canis_lupus_dingo
ENSCJAG00000047379LSM58192.308ENSCHIG00000024539LSM5100100.000Capra_hircus
ENSCJAG00000047379LSM58068.627ENSCHIG00000021428-9572.727Capra_hircus
ENSCJAG00000047379LSM58192.308ENSCHIG00000004079-10097.802Capra_hircus
ENSCJAG00000047379LSM510095.312ENSTSYG00000006449-100100.000Carlito_syrichta
ENSCJAG00000047379LSM58165.385ENSTSYG00000026530-9181.319Carlito_syrichta
ENSCJAG00000047379LSM58186.538ENSTSYG00000036637-10074.725Carlito_syrichta
ENSCJAG00000047379LSM59168.966ENSTSYG00000028728-10086.813Carlito_syrichta
ENSCJAG00000047379LSM55688.889ENSCAPG00000006980LSM510092.000Cavia_aperea
ENSCJAG00000047379LSM510087.500ENSCPOG00000036386LSM5100100.000Cavia_porcellus
ENSCJAG00000047379LSM58190.385ENSCCAG00000000821-10098.901Cebus_capucinus
ENSCJAG00000047379LSM510098.438ENSCCAG00000037808-100100.000Cebus_capucinus
ENSCJAG00000047379LSM58190.385ENSCCAG00000032123-10097.802Cebus_capucinus
ENSCJAG00000047379LSM58366.038ENSCCAG00000032792-10081.319Cebus_capucinus
ENSCJAG00000047379LSM58049.020ENSCCAG00000037334-10068.132Cebus_capucinus
ENSCJAG00000047379LSM510096.875ENSCATG00000040218LSM5100100.000Cercocebus_atys
ENSCJAG00000047379LSM58090.196ENSCATG00000014790-9598.182Cercocebus_atys
ENSCJAG00000047379LSM510085.938ENSCLAG00000000202LSM5100100.000Chinchilla_lanigera
ENSCJAG00000047379LSM58178.846ENSCLAG00000005062-9083.516Chinchilla_lanigera
ENSCJAG00000047379LSM58192.308ENSCHOG00000005335LSM599100.000Choloepus_hoffmanni
ENSCJAG00000047379LSM58192.308ENSCPBG00000013685LSM5100100.000Chrysemys_picta_bellii
ENSCJAG00000047379LSM57882.000ENSCING00000020625-9988.764Ciona_intestinalis
ENSCJAG00000047379LSM57380.851ENSCSAVG00000001439-9590.476Ciona_savignyi
ENSCJAG00000047379LSM510096.875ENSCANG00000039909LSM5100100.000Colobus_angolensis_palliatus
ENSCJAG00000047379LSM510087.500ENSCGRG00001015461Lsm5100100.000Cricetulus_griseus_chok1gshd
ENSCJAG00000047379LSM55688.889ENSCGRG00000007677Lsm5100100.000Cricetulus_griseus_crigri
ENSCJAG00000047379LSM55759.341ENSCSEG00000015286lsm510059.341Cynoglossus_semilaevis
ENSCJAG00000047379LSM58184.615ENSCVAG00000004262lsm510094.505Cyprinodon_variegatus
ENSCJAG00000047379LSM58184.615ENSDARG00000071573lsm510096.774Danio_rerio
ENSCJAG00000047379LSM58192.308ENSDNOG00000034958LSM5100100.000Dasypus_novemcinctus
ENSCJAG00000047379LSM58182.692ENSDNOG00000049495-9689.655Dasypus_novemcinctus
ENSCJAG00000047379LSM58192.308ENSDORG00000009422Lsm5100100.000Dipodomys_ordii
ENSCJAG00000047379LSM57874.000FBgn0035675CG66109581.395Drosophila_melanogaster
ENSCJAG00000047379LSM55667.416ENSETEG00000000777-9967.416Echinops_telfairi
ENSCJAG00000047379LSM510070.769ENSETEG00000010651-10079.121Echinops_telfairi
ENSCJAG00000047379LSM57380.851ENSETEG00000001469-9975.556Echinops_telfairi
ENSCJAG00000047379LSM58192.308ENSETEG00000018068LSM5100100.000Echinops_telfairi
ENSCJAG00000047379LSM57368.085ENSETEG00000016074-9881.081Echinops_telfairi
ENSCJAG00000047379LSM58184.615ENSEBUG00000008540lsm510091.209Eptatretus_burgeri
ENSCJAG00000047379LSM58192.308ENSEASG00005003500LSM5100100.000Equus_asinus_asinus
ENSCJAG00000047379LSM581100.000ENSECAG00000018445LSM510085.714Equus_caballus
ENSCJAG00000047379LSM58184.615ENSELUG00000007792lsm510094.505Esox_lucius
ENSCJAG00000047379LSM510095.312ENSFCAG00000000230LSM5100100.000Felis_catus
ENSCJAG00000047379LSM55889.189ENSFALG00000001892LSM592100.000Ficedula_albicollis
ENSCJAG00000047379LSM510084.375ENSFDAG00000008767LSM5100100.000Fukomys_damarensis
ENSCJAG00000047379LSM57769.388ENSFDAG00000008685-9768.293Fukomys_damarensis
ENSCJAG00000047379LSM58470.370ENSFHEG00000004011lsm59876.087Fundulus_heteroclitus
ENSCJAG00000047379LSM58184.615ENSGMOG00000018235lsm510094.444Gadus_morhua
ENSCJAG00000047379LSM58190.385ENSGALG00000041625LSM510098.901Gallus_gallus
ENSCJAG00000047379LSM58186.538ENSGACG00000005528lsm510095.604Gasterosteus_aculeatus
ENSCJAG00000047379LSM58192.308ENSGAGG00000015593LSM5100100.000Gopherus_agassizii
ENSCJAG00000047379LSM510096.875ENSGGOG00000043469LSM5100100.000Gorilla_gorilla
ENSCJAG00000047379LSM57585.417ENSHBUG00000013773lsm59995.402Haplochromis_burtoni
ENSCJAG00000047379LSM510085.938ENSHGLG00000011765LSM5100100.000Heterocephalus_glaber_female
ENSCJAG00000047379LSM510081.250ENSHGLG00100015610LSM510096.703Heterocephalus_glaber_male
ENSCJAG00000047379LSM55759.341ENSHCOG00000008288lsm510059.341Hippocampus_comes
ENSCJAG00000047379LSM57890.000ENSIPUG00000021095LSM510093.407Ictalurus_punctatus
ENSCJAG00000047379LSM56973.913ENSSTOG00000033886-9782.558Ictidomys_tridecemlineatus
ENSCJAG00000047379LSM510085.938ENSSTOG00000012662LSM5100100.000Ictidomys_tridecemlineatus
ENSCJAG00000047379LSM58182.692ENSJJAG00000004475-10091.139Jaculus_jaculus
ENSCJAG00000047379LSM59552.459ENSJJAG00000016144-9270.330Jaculus_jaculus
ENSCJAG00000047379LSM58188.462ENSJJAG00000012145-10097.802Jaculus_jaculus
ENSCJAG00000047379LSM59481.667ENSKMAG00000021861lsm510094.505Kryptolebias_marmoratus
ENSCJAG00000047379LSM58390.566ENSLBEG00000017379lsm58790.566Labrus_bergylta
ENSCJAG00000047379LSM58184.615ENSLBEG00000009235LSM56593.902Labrus_bergylta
ENSCJAG00000047379LSM58188.462ENSLACG00000022448LSM510095.604Latimeria_chalumnae
ENSCJAG00000047379LSM58184.615ENSLOCG00000012903lsm510094.505Lepisosteus_oculatus
ENSCJAG00000047379LSM58151.923ENSLAFG00000027938-10071.429Loxodonta_africana
ENSCJAG00000047379LSM58192.308ENSLAFG00000029579LSM5100100.000Loxodonta_africana
ENSCJAG00000047379LSM59880.952ENSMFAG00000031187-8197.917Macaca_fascicularis
ENSCJAG00000047379LSM510096.875ENSMFAG00000038508LSM5100100.000Macaca_fascicularis
ENSCJAG00000047379LSM58188.462ENSMFAG00000030152-10096.703Macaca_fascicularis
ENSCJAG00000047379LSM510096.875ENSMMUG00000045129-10096.875Macaca_mulatta
ENSCJAG00000047379LSM58090.196ENSMMUG00000039822-10090.000Macaca_mulatta
ENSCJAG00000047379LSM58188.462ENSMMUG00000030131-10096.703Macaca_mulatta
ENSCJAG00000047379LSM58188.462ENSMNEG00000037935-10096.703Macaca_nemestrina
ENSCJAG00000047379LSM510092.424ENSMNEG00000015331LSM5100100.000Macaca_nemestrina
ENSCJAG00000047379LSM59787.097ENSMLEG00000034037-10088.764Mandrillus_leucophaeus
ENSCJAG00000047379LSM510096.875ENSMLEG00000024945LSM5100100.000Mandrillus_leucophaeus
ENSCJAG00000047379LSM58086.275ENSMAMG00000012869lsm510091.209Mastacembelus_armatus
ENSCJAG00000047379LSM57585.417ENSMZEG00005019554lsm59995.402Maylandia_zebra
ENSCJAG00000047379LSM58190.385ENSMGAG00000012117LSM510098.901Meleagris_gallopavo
ENSCJAG00000047379LSM510087.500ENSMAUG00000012222Lsm5100100.000Mesocricetus_auratus
ENSCJAG00000047379LSM58190.385ENSMAUG00000008132-10098.901Mesocricetus_auratus
ENSCJAG00000047379LSM55875.269ENSMICG00000033928-10075.269Microcebus_murinus
ENSCJAG00000047379LSM510095.312ENSMICG00000005353LSM5100100.000Microcebus_murinus
ENSCJAG00000047379LSM510087.500ENSMOCG00000012018Lsm5100100.000Microtus_ochrogaster
ENSCJAG00000047379LSM55886.486ENSMMOG00000004026lsm58797.368Mola_mola
ENSCJAG00000047379LSM58192.308MGP_CAROLIEiJ_G0028421Lsm5100100.000Mus_caroli
ENSCJAG00000047379LSM510085.938ENSMUSG00000091625Lsm5100100.000Mus_musculus
ENSCJAG00000047379LSM58192.308MGP_PahariEiJ_G0022171Lsm5100100.000Mus_pahari
ENSCJAG00000047379LSM58192.308MGP_SPRETEiJ_G0029423Lsm5100100.000Mus_spretus
ENSCJAG00000047379LSM58192.308ENSMPUG00000005458-5787.069Mustela_putorius_furo
ENSCJAG00000047379LSM58192.308ENSMLUG00000017028LSM5100100.000Myotis_lucifugus
ENSCJAG00000047379LSM58060.784ENSNGAG00000022569-9678.889Nannospalax_galili
ENSCJAG00000047379LSM510089.062ENSNGAG00000024142Lsm5100100.000Nannospalax_galili
ENSCJAG00000047379LSM57282.609ENSNGAG00000017707-10087.097Nannospalax_galili
ENSCJAG00000047379LSM57291.304ENSNBRG00000009964LSM59891.304Neolamprologus_brichardi
ENSCJAG00000047379LSM510096.875ENSNLEG00000015268LSM5100100.000Nomascus_leucogenys
ENSCJAG00000047379LSM55688.889ENSOPRG00000002443LSM5100100.000Ochotona_princeps
ENSCJAG00000047379LSM58192.308ENSODEG00000019072-100100.000Octodon_degus
ENSCJAG00000047379LSM58192.308ENSODEG00000008258-100100.000Octodon_degus
ENSCJAG00000047379LSM56161.538ENSOANG00000014540-10061.333Ornithorhynchus_anatinus
ENSCJAG00000047379LSM58192.308ENSOCUG00000029043LSM5100100.000Oryctolagus_cuniculus
ENSCJAG00000047379LSM58184.615ENSORLG00000027725lsm56587.255Oryzias_latipes
ENSCJAG00000047379LSM58184.615ENSORLG00020003019lsm58591.860Oryzias_latipes_hni
ENSCJAG00000047379LSM58184.615ENSORLG00015003338lsm510093.407Oryzias_latipes_hsok
ENSCJAG00000047379LSM58182.692ENSOMEG00000001078lsm510092.308Oryzias_melastigma
ENSCJAG00000047379LSM58192.308ENSOGAG00000013892LSM5100100.000Otolemur_garnettii
ENSCJAG00000047379LSM58192.308ENSOARG00000006944LSM5100100.000Ovis_aries
ENSCJAG00000047379LSM510096.875ENSPPAG00000003697-100100.000Pan_paniscus
ENSCJAG00000047379LSM510095.312ENSPPRG00000002550LSM5100100.000Panthera_pardus
ENSCJAG00000047379LSM510095.312ENSPTIG00000015604LSM5100100.000Panthera_tigris_altaica
ENSCJAG00000047379LSM581100.000ENSPTRG00000049488-10085.714Pan_troglodytes
ENSCJAG00000047379LSM581100.000ENSPTRG00000019057LSM5100100.000Pan_troglodytes
ENSCJAG00000047379LSM58090.196ENSPANG00000032538-10090.000Papio_anubis
ENSCJAG00000047379LSM58186.538ENSPANG00000033477-10095.604Papio_anubis
ENSCJAG00000047379LSM510096.875ENSPANG00000032179-100100.000Papio_anubis
ENSCJAG00000047379LSM58184.615ENSPKIG00000011910lsm510094.505Paramormyrops_kingsleyae
ENSCJAG00000047379LSM55889.189ENSPSIG00000014796LSM5100100.000Pelodiscus_sinensis
ENSCJAG00000047379LSM510087.500ENSPEMG00000019994-10087.500Peromyscus_maniculatus_bairdii
ENSCJAG00000047379LSM57870.000ENSPEMG00000022375-10072.527Peromyscus_maniculatus_bairdii
ENSCJAG00000047379LSM58184.615ENSPFOG00000001433lsm510094.505Poecilia_formosa
ENSCJAG00000047379LSM57892.000ENSPLAG00000009665lsm510094.505Poecilia_latipinna
ENSCJAG00000047379LSM58184.615ENSPMEG00000022265lsm510094.505Poecilia_mexicana
ENSCJAG00000047379LSM58198.077ENSPPYG00000017661LSM510096.703Pongo_abelii
ENSCJAG00000047379LSM58192.308ENSPCAG00000013740LSM5100100.000Procavia_capensis
ENSCJAG00000047379LSM58192.308ENSPVAG00000009786LSM5100100.000Pteropus_vampyrus
ENSCJAG00000047379LSM57585.417ENSPNYG00000022236lsm59995.402Pundamilia_nyererei
ENSCJAG00000047379LSM58182.692ENSPNAG00000001887lsm510093.407Pygocentrus_nattereri
ENSCJAG00000047379LSM58184.906ENSRNOG00000027305AABR07065089.110095.652Rattus_norvegicus
ENSCJAG00000047379LSM58192.308ENSRNOG00000042126Lsm5100100.000Rattus_norvegicus
ENSCJAG00000047379LSM58192.308ENSRBIG00000030714-100100.000Rhinopithecus_bieti
ENSCJAG00000047379LSM58192.308ENSRBIG00000024431-10098.901Rhinopithecus_bieti
ENSCJAG00000047379LSM58192.308ENSRBIG00000030340-100100.000Rhinopithecus_bieti
ENSCJAG00000047379LSM510095.385ENSRBIG00000027803-100100.000Rhinopithecus_bieti
ENSCJAG00000047379LSM58192.308ENSRROG00000023884-100100.000Rhinopithecus_roxellana
ENSCJAG00000047379LSM510095.385ENSRROG00000042782-100100.000Rhinopithecus_roxellana
ENSCJAG00000047379LSM58192.308ENSRROG00000004655-100100.000Rhinopithecus_roxellana
ENSCJAG00000047379LSM56650.000YER146W-8851.220Saccharomyces_cerevisiae
ENSCJAG00000047379LSM58190.385ENSSBOG00000019124-10097.802Saimiri_boliviensis_boliviensis
ENSCJAG00000047379LSM58364.151ENSSBOG00000034794-10078.022Saimiri_boliviensis_boliviensis
ENSCJAG00000047379LSM510098.438ENSSBOG00000012312LSM5100100.000Saimiri_boliviensis_boliviensis
ENSCJAG00000047379LSM58184.615ENSSFOG00015010099lsm510094.505Scleropages_formosus
ENSCJAG00000047379LSM55760.440ENSSMAG00000007895lsm510060.440Scophthalmus_maximus
ENSCJAG00000047379LSM56671.429ENSSLDG00000008014-9279.221Seriola_lalandi_dorsalis
ENSCJAG00000047379LSM58184.615ENSSLDG00000025242lsm510094.505Seriola_lalandi_dorsalis
ENSCJAG00000047379LSM58190.385ENSSARG00000003330LSM510071.429Sorex_araneus
ENSCJAG00000047379LSM58188.462ENSSPUG00000002690LSM510098.387Sphenodon_punctatus
ENSCJAG00000047379LSM55760.440ENSSPAG00000005435lsm510060.440Stegastes_partitus
ENSCJAG00000047379LSM57888.000ENSSSCG00000029661-9688.406Sus_scrofa
ENSCJAG00000047379LSM58192.308ENSSSCG00000026064-100100.000Sus_scrofa
ENSCJAG00000047379LSM58186.538ENSTGUG00000017539LSM510096.703Taeniopygia_guttata
ENSCJAG00000047379LSM56795.349ENSTRUG00000017749lsm56487.952Takifugu_rubripes
ENSCJAG00000047379LSM57587.500ENSTNIG00000008695lsm59995.402Tetraodon_nigroviridis
ENSCJAG00000047379LSM58192.308ENSTBEG00000004876LSM5100100.000Tupaia_belangeri
ENSCJAG00000047379LSM58192.308ENSTTRG00000004237LSM5100100.000Tursiops_truncatus
ENSCJAG00000047379LSM581100.000ENSUAMG00000009786LSM568100.000Ursus_americanus
ENSCJAG00000047379LSM58192.308ENSUMAG00000002625LSM565100.000Ursus_maritimus
ENSCJAG00000047379LSM58192.308ENSVPAG00000009985LSM5100100.000Vicugna_pacos
ENSCJAG00000047379LSM58192.308ENSVVUG00000021311LSM5100100.000Vulpes_vulpes
ENSCJAG00000047379LSM58186.538ENSXETG00000026465lsm510095.122Xenopus_tropicalis
ENSCJAG00000047379LSM57892.000ENSXMAG00000029988lsm510094.505Xiphophorus_maculatus

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